-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cell without cultivation
-
Amann, R.I., Ludwing, W., and Schleifer, K.H. 1995. Phylogenetic identification and in situ detection of individual microbial cell without cultivation. Microbiol. Rev. 59: 143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwing, W.2
Schleifer, K.H.3
-
2
-
-
0035989425
-
Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs
-
Bonnet, R., Suau, A., Doré, J., Gibson, G.R., and Collins, M.D. 2002. Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. Int. J. Syst. Evol. Microbiol. 52: 757-763.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 757-763
-
-
Bonnet, R.1
Suau, A.2
Doré, J.3
Gibson, G.R.4
Collins, M.D.5
-
3
-
-
0013943938
-
Medium without rumen fluid for nonselective enumeration and isolation of rumen bacteria
-
Caldwell, D.R., and Bryant, M.P. 1966. Medium without rumen fluid for nonselective enumeration and isolation of rumen bacteria. Appl. Microbiol. 14: 794-801.
-
(1966)
Appl. Microbiol.
, vol.14
, pp. 794-801
-
-
Caldwell, D.R.1
Bryant, M.P.2
-
4
-
-
0028126829
-
The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
-
Collins, M.D., Lawson, P.A., Willems, A., Cordoba, J.J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H., and Farrow, J.A. 1994. The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations. Int. J. Syst. Bacteriol. 44: 812-826.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
Farrow, J.A.9
-
5
-
-
0004253071
-
-
Academic Press, Inc., New York
-
Drasar, B.S., and Hill, M.J. 1974. Human Intestinal Flora, p. 193-222, Academic Press, Inc., New York.
-
(1974)
Human Intestinal Flora
, pp. 193-222
-
-
Drasar, B.S.1
Hill, M.J.2
-
6
-
-
0000461280
-
Confidence limits of phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits of phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
7
-
-
0017738884
-
Fecal microbial flora in seventh day Adventist populations and control subjects
-
Finegold, S.M., Sutter, V.L., Sugihara, P.T., Elder, H.A., Lenhman, S.M., and Phillips, R.L. 1977. Fecal microbial flora in seventh day Adventist populations and control subjects. Am. J. Clin. Nutr. 30: 1781-1792.
-
(1977)
Am. J. Clin. Nutr.
, vol.30
, pp. 1781-1792
-
-
Finegold, S.M.1
Sutter, V.L.2
Sugihara, P.T.3
Elder, H.A.4
Lenhman, S.M.5
Phillips, R.L.6
-
9
-
-
0001845283
-
Normal indigenous flora
-
Hentges, D.J. (ed), Academic Press, New York
-
Finegold, S.M., Sutter, V.L., and Mathisen, G.E. 1983. Normal indigenous flora, p. 3-31. In Hentges, D.J. (ed), Human Intestinal Microflora in Health and Disease, Academic Press, New York.
-
(1983)
Human Intestinal Microflora in Health and Disease
, pp. 3-31
-
-
Finegold, S.M.1
Sutter, V.L.2
Mathisen, G.E.3
-
10
-
-
0036024611
-
Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
-
Hayashi, H., Sakamoto, M., and Benno, Y. 2002. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol. Immunol. 46: 535-548.
-
(2002)
Microbiol. Immunol.
, vol.46
, pp. 535-548
-
-
Hayashi, H.1
Sakamoto, M.2
Benno, Y.3
-
11
-
-
0029115109
-
Polymerase chain reaction amplification and restriction fragment length polymorphism analysis of 16S rRNA gene from methanogens
-
Hiraishi, A., Kamagata, Y., and Nakamura, K. 1995. Polymerase chain reaction amplification and restriction fragment length polymorphism analysis of 16S rRNA gene from methanogens. J. Ferment. Bioeng. 79: 523-529.
-
(1995)
J. Ferment. Bioeng.
, vol.79
, pp. 523-529
-
-
Hiraishi, A.1
Kamagata, Y.2
Nakamura, K.3
-
12
-
-
0036185771
-
Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis
-
Hold, G.L., Pryde, S.E. Russell, V.J., Furrie, E., and Flint, H.J. 2002. Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis. FEMS Microbiol. Ecol. 39: 33-39.
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 33-39
-
-
Hold, G.L.1
Pryde, S.E.2
Russell, V.J.3
Furrie, E.4
Flint, H.J.5
-
13
-
-
0019296687
-
A simple method for estimating the evolutionary rate of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating the evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
14
-
-
0025166175
-
The fecapentaenes, potent mutagens from human feces
-
Kingston, D.G.I., Van Tassell, R.L., and Wilkins, T.D. 1990. The fecapentaenes, potent mutagens from human feces. Chem. Res. Toxicol. 3: 391-400.
-
(1990)
Chem. Res. Toxicol.
, vol.3
, pp. 391-400
-
-
Kingston, D.G.I.1
Van Tassell, R.L.2
Wilkins, T.D.3
-
15
-
-
0035040382
-
Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics
-
Kitts, C.L. 2001. Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics. Curr. Issues Intest. Microbiol. 2: 17-25.
-
(2001)
Curr. Issues Intest. Microbiol.
, vol.2
, pp. 17-25
-
-
Kitts, C.L.1
-
16
-
-
0018654143
-
Fecal bacteria in south African rural blacks and other population groups
-
Koornhof, H.J., Richardson, D.M., Wall, D.M., and Moore, W.E.C. 1979. Fecal bacteria in south African rural blacks and other population groups. Isr. J. Med. Sci. 15: 335-340.
-
(1979)
Isr. J. Med. Sci.
, vol.15
, pp. 335-340
-
-
Koornhof, H.J.1
Richardson, D.M.2
Wall, D.M.3
Moore, W.E.C.4
-
17
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt, E., and Goodfellow, M. (eds), Wiley, New York
-
Lane, D.J. 1991. 16S/23S rRNA sequencing, p. 115-175. In Stackebrandt, E., and Goodfellow, M. (eds), Nucleic Acid Techniques in Bacterial Systematics, Wiley, New York.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
18
-
-
0029162158
-
Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples
-
Langendijk, P.S., Schut, F., Jansen, G.J., Raangs, G.C., Kamphuis, G.R., Wilkinson, M.H., and Welling, G.W. 1995. Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. Appl. Environ. Microbiol. 61: 3069-3075.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 3069-3075
-
-
Langendijk, P.S.1
Schut, F.2
Jansen, G.J.3
Raangs, G.C.4
Kamphuis, G.R.5
Wilkinson, M.H.6
Welling, G.W.7
-
19
-
-
0032918722
-
A new version of the RDP (Ribosomal Database Project)
-
Maidak, B.L., Cole, J.R., Parker, C.T., Jr., Garrity, G.M., Larsen, N., Li, B., Lilburn, T.G., McCaughey, M.J., Olsen, G.J., Overbeek, R., Pramanik, S., Schmidt, T.M., Tiedje, J.M., and Woese, C.R. 1999. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res. 27: 171-173.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 171-173
-
-
Maidak, B.L.1
Cole, J.R.2
Parker C.T., Jr.3
Garrity, G.M.4
Larsen, N.5
Li, B.6
Lilburn, T.G.7
McCaughey, M.J.8
Olsen, G.J.9
Overbeek, R.10
Pramanik, S.11
Schmidt, T.M.12
Tiedje, J.M.13
Woese, C.R.14
-
20
-
-
0014619204
-
A simple method ("plate-in-bottle method") for the cultivation of fastidious anaerobes
-
Mitsuoka, T., Morishita, Y., Terada, A., and Yamamoto, S. 1969. A simple method ("plate-in-bottle method") for the cultivation of fastidious anaerobes. Jpn. J. Microbiol. 13: 383- 385.
-
(1969)
Jpn. J. Microbiol.
, vol.13
, pp. 383-385
-
-
Mitsuoka, T.1
Morishita, Y.2
Terada, A.3
Yamamoto, S.4
-
21
-
-
0016167941
-
Human fecal flora: The normal flora of 20 Japanese-Hawaiians
-
Moore, W.E., and Holdeman, L.V. 1974. Human fecal flora: The normal flora of 20 Japanese-Hawaiians. Appl. Microbiol. 27: 961-979.
-
(1974)
Appl. Microbiol.
, vol.27
, pp. 961-979
-
-
Moore, W.E.1
Holdeman, L.V.2
-
22
-
-
0029084396
-
Intestinal floras of populations that have a high risk of colon cancer
-
Moore, W.E., and Moore, L.H. 1995. Intestinal floras of populations that have a high risk of colon cancer. Appl. Environ. Microbiol. 61: 3202-3207.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 3202-3207
-
-
Moore, W.E.1
Moore, L.H.2
-
23
-
-
0021007836
-
Influence of different dietary regimen upon the composition of the human fecal flora
-
Noack-Loebel, C., Küster, E., Rusch, V., and Zimmermann, K. 1983. Influence of different dietary regimen upon the composition of the human fecal flora. Prog. Food Nutr. Sci. 7: 127-131.
-
(1983)
Prog. Food Nutr. Sci.
, vol.7
, pp. 127-131
-
-
Noack-Loebel, C.1
Küster, E.2
Rusch, V.3
Zimmermann, K.4
-
24
-
-
0031468763
-
Structure of cellulases and their application
-
Ohmiya, K., Sakka, K., Karita, S., and Kimura, T. 1997. Structure of cellulases and their application. Biotechnol. Genet. Eng. Rev. 14: 365-414.
-
(1997)
Biotechnol. Genet. Eng. Rev.
, vol.14
, pp. 365-414
-
-
Ohmiya, K.1
Sakka, K.2
Karita, S.3
Kimura, T.4
-
25
-
-
0028118435
-
Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria
-
Paster, B.J., Dewhirst, F.E., Olsen, I., and Fraser, G.J. 1994. Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria. J. Bacteriol. 176: 725-732.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 725-732
-
-
Paster, B.J.1
Dewhirst, F.E.2
Olsen, I.3
Fraser, G.J.4
-
26
-
-
0034992657
-
Bacterial diversity in human subgingival plaque
-
Paster, B.J., Boches, S.K., Galvin, J.L., Ericson, R.E., Lau, C.N., Levanos, V.A., Sahasrabudhe, A., and Dewhirst, F.E. 2001. Bacterial diversity in human subgingival plaque. J. Bacteriol. 183: 3770-3783.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 3770-3783
-
-
Paster, B.J.1
Boches, S.K.2
Galvin, J.L.3
Ericson, R.E.4
Lau, C.N.5
Levanos, V.A.6
Sahasrabudhe, A.7
Dewhirst, F.E.8
-
27
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R., and Lipman, D.J. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. U.S.A. 85: 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
28
-
-
0033851746
-
Comparison of oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries
-
Sakamoto, M., Umeda, M., Ishikawa, I., and Benno, Y. 2000. Comparison of oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries. Microbiol. Immunol. 44: 643-652.
-
(2000)
Microbiol. Immunol.
, vol.44
, pp. 643-652
-
-
Sakamoto, M.1
Umeda, M.2
Ishikawa, I.3
Benno, Y.4
-
29
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
30
-
-
0017381987
-
Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon
-
Salyers, A.A., Vercellotti, J.R., West, S.E.H., and Wilkins, T.D. 1977. Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon. Appl. Environ. Microbiol. 33: 319-322.
-
(1977)
Appl. Environ. Microbiol.
, vol.33
, pp. 319-322
-
-
Salyers, A.A.1
Vercellotti, J.R.2
West, S.E.H.3
Wilkins, T.D.4
-
31
-
-
84986532523
-
Breakdown of xylan by enzyme from human colonic bacteria
-
Salyers, A.A., Balascio, J.R., and Palmer, J.K. 1981. Breakdown of xylan by enzyme from human colonic bacteria. J. Food Biochem. 6: 39-55.
-
(1981)
J. Food Biochem.
, vol.6
, pp. 39-55
-
-
Salyers, A.A.1
Balascio, J.R.2
Palmer, J.K.3
-
32
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau, A., Bonnet, R., Sutren, M., Godon, J.-J., Gibson, G.R., Collins, M.D., and Dore, J. 1999. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65: 4799-4807.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Godon, J.-J.4
Gibson, G.R.5
Collins, M.D.6
Dore, J.7
-
33
-
-
0035031148
-
Fusobacterium prausnitzii and related species represent a dominant group within the human fecal flora
-
Suau, A., Rochet, V., Sghir, A., Gramet, G., Brewaeys, S., Sutren, M., Rigottier-Gois, L., and Dore, J. 2001. Fusobacterium prausnitzii and related species represent a dominant group within the human fecal flora. Syst. Appl. Microbiol. 24: 139-145.
-
(2001)
Syst. Appl. Microbiol.
, vol.24
, pp. 139-145
-
-
Suau, A.1
Rochet, V.2
Sghir, A.3
Gramet, G.4
Brewaeys, S.5
Sutren, M.6
Rigottier-Gois, L.7
Dore, J.8
-
34
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
35
-
-
0029900986
-
Human colonic biota studied by ribosomal DNA sequence analysis
-
Wilson, K.H., and Blitchington, R.B. 1996. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62: 2273-2278.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2273-2278
-
-
Wilson, K.H.1
Blitchington, R.B.2
-
36
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
Wintzingerode, F.V., Göel, U.B., and Stackebrandt, E. 1997. Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21: 213-229.
-
(1997)
FEMS Microbiol. Rev.
, vol.21
, pp. 213-229
-
-
Wintzingerode, F.V.1
Göel, U.B.2
Stackebrandt, E.3
-
37
-
-
0023184331
-
Bacterial evolution
-
Woese, C.R. 1987. Bacterial evolution. Microbiol. Rev. 51: 221-271.
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
38
-
-
0031684010
-
Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
-
Zoetendal, E.G., Akkermans, A.D., and De Vos, W.M. 1998. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 64: 3854-3859.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3854-3859
-
-
Zoetendal, E.G.1
Akkermans, A.D.2
De Vos, W.M.3
|