Temporal gene expression and probiotic attributes of Lactobacillus acidophilus during growth in milk

Journal of Dairy Science

Volumn 92, Issue 3, 2009, Pages 870-886

  Azcarate Peril, M A ^a,b   Tallon, R ^a,c   Klaenhammer, T R ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF NORTH CAROLINA   (United States)

^c SAF ISIS   (France)

Author keywords

Dairy; Lactobacillus acidophilus; Microarray analysis; Probiotic

Indexed keywords

BACTERIA (MICROORGANISMS); LACTOBACILLUS ACIDOPHILUS;

MUCIN; PEPTIDE HYDROLASE; PROBIOTIC AGENT;

ANIMAL; ARTICLE; BACTERIUM ADHERENCE; CARBOHYDRATE METABOLISM; CELL STRAIN CACO 2; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; HUMAN; LACTOBACILLUS ACIDOPHILUS; METABOLISM; MICROBIOLOGY; MILK; MUTATION; PH; PHYSIOLOGICAL STRESS; QUORUM SENSING; TIME;

ANIMALS; BACTERIAL ADHESION; CACO-2 CELLS; CARBOHYDRATE METABOLISM; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; HUMANS; HYDROGEN-ION CONCENTRATION; LACTOBACILLUS ACIDOPHILUS; MILK; MUCINS; MUTATION; PEPTIDE HYDROLASES; PROBIOTICS; QUORUM SENSING; STRESS, PHYSIOLOGICAL; TIME FACTORS;

EID: 61449236351     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2008-1457     Document Type: Article

References (44)

1. Altermann, E., L. B. Buck, R. Cano, and T. R. Klaenhammer. 2004. Identification and phenotypic characterization of the cell-division protein CdpA. Gene 342:189-197.
2. Altermann, E., W. M. Russell, M. A. Azcarate-Peril, R. Barrangou, B. L. Buck, O. McAuliffe, N. Souther, A. Dobson, T. Duong, and M. Callanan. 2005. Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc. Natl. Acad. Sci. USA 102:3906-3912.
3. Azcarate-Peril, M. A., J. M. Bruno-Barcena, H. M. Hassan, and T. R. Klaenhammer. 2006. Transcriptional and functional analysis of oxalyl-coenzyme A (CoA) decarboxylase and formyl-CoA transferase genes from Lactobacillus acidophilus. Appl. Environ. Microbiol. 72:1891-1899.
4. Azcarate-Peril, M. A., O. McAuliffe, E. Altermann, S. Lick, W. M. Russell, and T. R. Klaenhammer. 2005. Microarray analysis of a two-component regulatory system involved in acid resistance and proteolytic activity in Lactobacillus acidophilus. Appl. Environ. Microbiol. 71:5794-5804.
5. Barefoot, S. F., and T. R. Klaenhammer. 1983. Detection and activity of lacticin B, a bacteriocin produced by Lactobacillus acidophilus. Appl. Environ. Microbiol. 71:4925-4929.
6. Barrangou, R., M. A. Azcarate-Peril, T. Duong, S. B. Conners, R. M. Kelly, and T. R. Klaenhammer. 2006. Global analysis of carbohydrate utilization by Lactobacillus acidophilus using cDNA microarrays. Proc. Natl. Acad. Sci. USA 103:3816-3821.
7. Buck, B. L., E. Altermann, T. Svingerud, and T. R. Klaenhammer. 2005. Functional analysis of putative adhesion factors in Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 71:8344-8351.
8. Buck, B. L., M. A. Azcarate Peril, and T. Klaenhammer. 2008. Role of autoinducer-2 on the adhesion ability of Lactobacillus acidophilus. J. Appl. Microbiol. In press.
9. Carr, F. J., D. Chill, and N. Maida. 2002. The lactic acid bacteria: A literature survey. Crit. Rev. Microbiol. 28:281-370.
10. Cesena, C., L. Morelli, M. Alander, T. Siljander, E. Tuomola, S. Salminen, T. Mattila-Sandholm, T. Vilpponen-Salmela, and A. von Wright. 2001. Lactobacillus crispatus and its nonaggregating mutant in human colonization trials. J. Dairy Sci. 84:1001-1010.
11. Champagne, C. P., N. J. Gardner, and D. Roy. 2005. Challenges in the addition of probiotic cultures to foods. Crit. Rev. Food Sci. Nutr. 45:61-84.
12. Cui, X., and G. A. Churchill. 2003. Statistical tests for differential expression in cDNA microarray experiments. Genome Biol. 4:210.
13. Duong, T., R. Barrangou, W. M. Russell, and T. R. Klaenhammer. 2006. Characterization of the tre locus and analysis of trehalose cryoprotection in Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 72:1218-1225.
14. Fabret, C., and J. A. Hoch. 1998. A two-component signal transduction system essential for growth of Bacillus subtilis: Implications for anti-infective therapy. J. Bacteriol. 180:6375-6383.
15. Fonseca, F., C. Beal, and G. Corrieu. 2000. Method of quantifying the loss of acidification activity of lactic acid starters during freezing and frozen storage. J. Dairy Res. 67:83-90.
16. Gorke, B., and J. Stulke. 2008. Carbon catabolite repression in bacteria: Many ways to make the most out of nutrients. Nat. Rev. Microbiol. 6:613-624.
17. Grangette, C., S. Nutten, E. Palumbo, S. Morath, C. Hermann, J. Dewulf, B. Pot, T. Hartung, P. Hols, and A. Mercenier. 2005. Enhanced antiinflammatory capacity of a Lactobacillus plantarum mutant synthesizing modified teichoic acids. Proc. Natl. Acad. Sci. USA 102:10321-10326.
18. Hegde, P., R. Qi, K. Abernathy, C. Gay, S. Dharap, R. Gaspard, J. E. Hughes, E. Snesrud, N. Lee, and J. Quackenbush. 2000. A concise guide to cDNA microarray analysis. Biotechniques 29:548-562.
19. Hisbergues, M., M. Magi, P. Rigaux, J. Steuve, L. Garcia, D. Goudercourt, B. Pot, J. Pestel, and A. Jacquet. 2007. In vivo and in vitro immunomodulation of Der p 1 allergen-specific response by Lactobacillus plantarum bacteria. Clin. Exp. Allergy 37:1286-1295.
20. Hutkins, R. 2006. Cultured dairy products. Pages 107-114 in Microbiology and Technology of Fermented Foods. Blackwell Publishing, Ames, Iowa.
21. Kunz, C., S. Rudloff, W. Baier, N. Klein, and S. Strobel. 2000. Oligosaccharides in human milk: Structural, functional, and metabolic aspects. Annu. Rev. Nutr. 20:699-722.
22. Law, J., G. Buist, A. Haandrikman, J. Kok, G. Venema, and K. Leenhouts. 1995. A system to generate chromosomal mutations in Lactococcus lactis which allows fast analysis of targeted genes. J. Bacteriol. 177:7011-7018.
23. Leonard, B. A. B., and A. Podbielski. 1999. Emerging density-dependent control systems in Gram-positive cocci. Pages 315-331 in Cell-Cell Signaling in Bacteria. G. M. Dunny and S. C. Winans, ed. American Society for Microbiology, Washington, DC.
24. Liu, H., S. Tarima, A. S. Borders, T. V. Getchell, M. L. Getchell, and A. J. Stromberg. 2005. Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments. BMC Bioinformatics 6:106.
25. Marcotte, H., S. Ferrari, C. Cesena, L. Hammarstrom, L. Morelli, G. Pozzi, and M. R. Oggioni. 2004. The aggregation-promoting factor of Lactobacillus crispatus M247 and its genetic locus. J. Appl. Microbiol. 97:749-756.
26. Mattila-Sandholm, T., P. Myllarinen, R. Crittenden, G. Mogensen, R. Fonden, and M. Saarela. 2002. Technological challenges for future probiotic foods. Int. Dairy J. 12:173-182.
27. McAuliffe, O., R. J. Cano, and T. R. Klaenhammer. 2005. Genetic analysis of two bile salt hydrolase activities in Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 71:4925-4929.
28. Monnet, V., M. Nardi, A. Chopin, M. C. Chopin, and J. C. Gripon. 1994. Biochemical and genetic characterization of PepF, an oligopeptidase from Lactococcus lactis. J. Biol. Chem. 269:32070-32076.
29. Ouwehand, A. C., E. M. Tuomola, S. Tolkko, and S. Salminen. 2001. Assessment of adhesion properties of novel probiotic strains to human intestinal mucus. Int. J. Food Microbiol. 64:119-126.
30. Pastar, I., I. Tonic, N. Golic, M. Kojic, R. van Kranenburg, M. Kleerebezem, L. Topisirovic, and G. Jovanovic. 2003. Identification and genetic characterization of a novel proteinase, PrtR, from the human isolate Lactobacillus rhamnosus BGT10. Appl. Environ. Microbiol. 69:5802-5811.
31. Peltoniemi, K., E. Vesanto, and A. Palva. 2002. Genetic characterization of an oligopeptide transport system from Lactobacillus delbrueckii subsp. bulgaricus. Arch. Microbiol. 177:457-467.
32. Reid, G., M. E. Sanders, H. R. Gaskins, G. R. Gibson, A. Mercenier, R. Rastall, M. Roberfroid, I. Rowland, C. Cherbut, and T. R. Klaenhammer. 2003. New scientific paradigms for probiotics and prebiotics. J. Clin. Gastroenterol. 37:105-118.
33. Russell, W. M., and T. R. Klaenhammer. 2001. Efficient system for directed integration into the Lactobacillus acidophilus and Lactobacillus gasseri chromosomes via homologous recombination. Appl. Environ. Microbiol. 67:4361-4364.
34. Sanders, M. E., and T. R. Klaenhammer. 2001. Invited review: The scientific basis of Lactobacillus acidophilus NCFM functionality as a probiotic. J. Dairy Sci. 84:319-331.
35. Savijoki, K., H. Ingmer, and P. Varmanen. 2006. Proteolytic systems of lactic acid bacteria. Appl. Microbiol. Biotechnol. 71:394-406.
36. Shah, N. P. 2000. Probiotic bacteria: Selective enumeration and survival in dairy foods. J. Dairy Sci. 83:894-907.
37. Smeianov, V. V., P. Wechter, J. R. Broadbent, J. E. Hughes, B. T. Rodriguez, T. K. Christensen, Y. Ardo, and J. L. Steele. 2007. Comparative high-density microarray analysis of gene expression during growth of Lactobacillus helveticus in milk versus rich culture medium. Appl. Environ. Microbiol. 73:2661-2672.
38. Spellerberg, B., E. Rozdzinski, S. Martin, J. Weber-Heynemann, and R. Lutticken. 2002. rgf encodes a novel two-component signal transduction system of Streptococcus agalactiae. Infect. Immun. 70:2434-2440.
39. Sturme, M. H., J. Nakayama, D. Molenaar, Y. Murakami, R. Kunugi, T. Fujii, E. E. Vaughan, M. Kleerebezem, and W. M. de Vos. 2005. An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence. J. Bacteriol. 187:5224-5235.
40. Tatusov, R. L., E. V. Koonin, and D. J. Lipman. 1997. A genomic perspective on protein families. Science 278:631-637.
41. Titgemeyer, F., and W. Hillen. 2002. Global control of sugar metabolism: A gram-positive solution. Antonie Van Leeuwenhoek 82:59-71.
42. Tuomola, E., R. Crittenden, M. Playne, E. Isolauri, and S. Salminen. 2001. Quality assurance criteria for probiotic bacteria. Am. J. Clin. Nutr. 73(Suppl):393S-398S.
43. Vinciotti, V., R. Khanin, D. D'Alimonte, X. Liu, N. Cattini, G. Hotchkiss, G. Bucea, O. de Jesus, J. Rasaiyaah, C. P. Smith, P. Kellam, and E. Wit. 2005. An experimental evaluation of a loop versus a reference design for two-channel microarrays. Bioinformatics 21:492-501.
44. Vishwanath, S., and R. Ramphal. 1984. Adherence of Pseudomonas aeruginosa to human tracheobronchial mucin. Infect. Immun. 45:197-202.