Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 11, 2005, Pages 3906-3912

  Altermann, Eric ^a   Russell, W Michael ^a,b,d   Azcarate Peril, M Andrea ^a   Barrangou, Rodolphe ^a   Buck, B Logan ^a   McAuliffe, Olivia ^a,e   Souther, Nicole ^a   Dobson, Alleson ^a   Duong, Tri ^a   Callanan, Michael ^a,e   Lick, Sonja ^a,f   Hamrick, Alice ^c   Cano, Raul ^c   Klaenhammer, Todd R ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b Danisco USA Inc   (United States)

^c CALIFORNIA POLYTECHNIC STATE UNIVERSITY   (United States)

^d Mead Johnson Nutritionals   (United States)

^e ANIMAL AND GRASSLAND RESEARCH AND INNOVATION CENTRE   (Ireland)

^f FEDERAL INSTITUTE FOR RISK ASSESSMENT   (Germany)

Author keywords

Adhesion; in silico analysis; Proteolytic system; Stress response; Sugar metabolism

Indexed keywords

BACTERIOCIN; FIBRONECTIN BINDING PROTEIN; FRUCTOSE OLIGOSACCHARIDE; INTEGRASE; LACTACIN B; LACTIC ACID; PEPTIDASE; RAFFINOSE; SPACER DNA; TRANSPOSASE; UNCLASSIFIED DRUG;

ACID TOLERANCE; ARTICLE; BACTERIAL GENOME; BACTERIAL SURVIVAL; BACTERIOPHAGE; CELL ADHESION; COMPUTER MODEL; GENE CLUSTER; GENE LOCUS; LACTIC ACID BACTERIUM; LACTOBACILLUS ACIDOPHILUS; MICROBIAL ACTIVITY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; PRIORITY JOURNAL; PROPHAGE; PROTEIN DEGRADATION; PROTEIN TRANSPORT; SEQUENCE ANALYSIS; TRANSCRIPTION REGULATION;

BACTERIAL ADHESION; BACTERIOCINS; BACTERIOPHAGES; CARBOHYDRATE METABOLISM; COMPUTATIONAL BIOLOGY; GENOME, BACTERIAL; LACTOBACILLUS ACIDOPHILUS; MOLECULAR SEQUENCE DATA; PEPTIDE HYDROLASES; PROPHAGES; SEQUENCE ANALYSIS, DNA; TRANSPOSASES;

EID: 17644389315     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0409188102     Document Type: Article

References (50)

1. Reid, G., Sanders, M. E., Gaskins, H. R., Gibson, G. R., Mercenier, A., Rastall, R., Roberfroid, M., Rowland, I., Cherbut, C. & Klaenhammer, T. R. (2003) J. Clin. Gastroenterol 37, 105-118.
2. Klaenhammer, T. R. & Russell, W. M. (2000) in Encyclopedia of Food Microbiology (Academic, Amsterdam), Vol. 2, pp. 1151-1157.
3. Johnson, J. L., Phelps, C. F., Cummins, C. S., London, J. & Gasser, F. (1980) Int. J. Syst. Bacteriol. 30, 53-68.
4. Heilig, H. G., Zoetendal, E. G., Vaughan, E. E., Marteau, P., Akkermans, A. D. & De Vos, W. M. (2002) Appl. Environ. Microbiol. 68, 114-123.
5. Schell, M. A., Karmirantzou, M., Snel, B., Vilanova, D., Berger, B., Pessi, G., Zwahlen, M. C., Desiere, F., Bork, P., Delley, M., et al. (2002) Proc. Natl. Acad. Sci. USA 99, 14422-14427.
6. Pridmore, R. D., Berger, B., Desiere, F., Vilanova, D., Barretto, C., Pittet, A. C., Zwahlen, M. C., Rouvet, M., Altermann, E., Barrangou, R., et al. (2004) Proc. Natl. Acad. Sci. USA 101, 2512-2517.
7. Kleerebezem, M., Boekhorst, J., van Kranenburg, R., Molenaar, D., Kuipers, O. P., Leer, R., Tarchini, R., Peters, S. A., Sandbrink, H. M., Fiers, M. W., et al. (2003) Proc. Natl. Acad. Sci. USA 100, 1990-1995.
8. Klaenhammer, T., Altermann, E., Arigoni, F., Bolotin, A., Breidt, F., Broadbent, J., Cano, R., Chaillou, S., Deutscher, J., Gasson, M., et al. (2002) Antonie Leeuwenhoek 82, 29-58.
9. Sanders, M. E. & Klaenhammer, T. R. (2001) J. Dairy Sci. 84, 319-331.
10. Altermann, E. & Klaenhammer, T. R. (2003) OMICS 7, 161-169.
11. Delcher, A. L., Harmon, D., Kasif, S., White, O. & Salzberg, S. L. (1999) Nucleic Acids Res. 27, 4636-4641.
12. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
13. Tatusov, R. L., Natale, D. A., Garkavtsev, I. V., Tatusova, T. A., Shankavaram, U. T., Rao, B. S., Kiryutin, B., Galperin, M. Y., Fedorova, N. D. & Koonin, E. V. (2001) Nucleic Acids Res. 29, 22-28.
14. Lowe, T. M. & Eddy, S. R. (1997) Nucleic Acids Res. 25, 955-964.
15. Kurtz, S. & Schleiermacher, C. (1999) Bioinformatics 15, 426-427.
16. Jensen, L. J., Friis, C. & Ussery, D. W. (1999) Res. Microbiol. 150, 773-777.
17. Kanehisa, M., Goto, S., Kawashima, S., Okuno, Y. & Hattori, M. (2004) Nucleic Acids Res. 32, D277-D280.
18. Jansen, R., van Embden, J. D., Gaastra, W. & Schouls, L. M. (2002) OMICS 6, 23-33.
19. Ishino, Y., Shinagawa, H., Makino, K., Amemura, M. & Nakata, A. (1987) J. Bacteriol. 169, 5429-5433.
20. Desiere, F., Lucchini, S., Canchaya, C., Ventura, M. & Brussow, H. (2002) Antonie Leeuwenhoek 82, 73-91.
21. Foschino, R., Picozzi, C. & Galli, A. (2001) J. Appl. Microbiol. 91, 394-403.
22. Lehnherr, H., Maguin, E., Jafri, S. & Yarmolinsky, M. B. (1993) J. Mol. Biol. 233, 414-428.
23. Romero, D. A. & Klaenhammer, T. R. (1993) J. Dairy Sci. 76, 1-19.
24. Klaenhammer, T. R. (1993) FEMS Microbiol. Rev. 12, 39-86.
25. Eijsink, V. G., Axelsson, L., Diep, D. B., Havarstein, L. S., Holo, H. & Nes, I. F. (2002) Antonie Leeuwenhoek 81, 639-654.
26. Morishita, T., Deguchi, Y., Yajima, M., Sakurai, T. & Yura, T. (1981) J. Bacteriol. 148, 64-71.
27. Haandrikman, A. J., Meesters, R., Laan, H., Konings, W. N., Kok, J. & Venema, G. (1991) Appl. Environ. Microbiol. 57, 1899-1904.
28. Gibson, G. R. & Roberfroid, M. B. (1995) J. Nutr. 125, 1401-1412.
29. Barrangou, R., Altermann, E., Hutkins, R., Cano, R. & Klaenhammer, T. R. (2003) Proc. Natl. Acad. Sci. USA 100, 8957-8962.
30. Cotter, P. D. & Hill, C. (2003) Microbiol. Mol. Biol. Rev. 67, 429-453.
31. Kullen, M. J. & Klaenhammer, T. R. (1999) Mol. Microbiol. 33, 1152-1161.
32. Azcarate-Peril, M., Altermann, E., Hoover-Fitzula, R., Cano, R. & Klaenhammer, T. R. (2004) Appl. Environ. Microbiol. 70, 5315-5322.
33. Archibald, F. S. & Fridovich, I. (1981) J. Bacteriol. 146, 928-936.
34. Gonzalez, S. N., Apella, M. C., Romero, N., Pesce de Ruiz Holgado, A. A. & Oliver, G. (1989) Chem. Pharm. Bull. (Tokyo) 37, 3026-3028.
35. Girgis, H. S., Smith, J., Luchansky, J. B. & Klaenhammer, T. R. (2003) in Microbial Stress Adaptation and Food Safety, eds. Yousef, A. E. & Juneja, V. K. (CRC Press, Boca Raton, FL).
36. Serror, P., Dervyn, R., Ehrlich, S. D. & Maguin, E. (2003) FEMS Microbiol. Lett. 226, 323-330.
37. Okada, Y., Makino, S., Tobe, T., Okada, N. & Yamazaki, S. (2002) Appl. Environ. Microbiol. 68, 1541-1547.
38. Cotter, P. D., Emerson, N., Gahan, C. G. & Hill, C. (1999) J. Bacteriol. 181, 6840-6843.
39. Nikolskaya, A. N. & Galperin, M. Y. (2002) Nucleic Acids Res. 30, 2453-2459.
40. Stingele, F., Neeser, J. R. & Mollet, B. (1996) J. Bacteriol. 178, 1680-1690.
41. Hood, S. K. & Zottola, E. A. (1987) J. Food Sci. 52, 791-805.
42. Vidal, K., Donnet-Hughes, A. & Granato, D. (2002) Infect. Immun. 70, 2057-2064.
43. Granato, D., Perotti, F., Masserey, I., Rouvet, M., Golliard, M., Servin, A. & Brassart, D. (1999) Appl Environ. Microbiol. 65, 1071-1077.
44. Roos, S. & Jonsson, H. (2002) Microbiology 148, 433-442.
45. Schiffrin, E. J., Rochat, F., Link-Amster, H., Aeschlimann, J. M. & Donnet-Hughes, A. (1995) J. Dairy Sci. 78, 491-497.
46. Valeur, N., Engel, P., Carbajal, N., Connolly, E. & Ladefoged, K. (2004) Appl. Environ. Microbiol. 70, 1176-1181.
47. Tannock, G. W. (1999) Antonie Leeuwenhoek 76, 265-278.
48. Greene, J. D. & Klaenhammer, T. R. (1994) Appl. Environ. Microbiol. 60, 4487-4494.
49. Kapczynski, D. R., Meinersmann, R. J. & Lee, M. D. (2000) Curr. Microbiol. 41, 136-141.
50. Altermann, E., Buck, L. B., Cano, R. & Klaenhammer, T. R. (2004) Gene 342, 189-197.