-
1
-
-
0032810422
-
Microbial stress response in minimal processing Int
-
Abee T, Wouters JA. 1999. Microbial stress response in minimal processing Int. J. Food Microbiol. 50:65-91.
-
(1999)
J. Food Microbiol.
, vol.50
, pp. 65-91
-
-
Abee, T.1
Wouters, J.A.2
-
2
-
-
53249147141
-
Not just for Eukarya anymore: Protein glycosylation in Bacteria and Archaea
-
Abu-Qarn M, Eichler J, Sharon N. 2008. Not just for Eukarya anymore: Protein glycosylation in Bacteria and Archaea. Curr. Opin Struct. Biol. 18:544-550.
-
(2008)
Curr. Opin Struct. Biol.
, vol.18
, pp. 544-550
-
-
Abu-Qarn, M.1
Eichler, J.2
Sharon, N.3
-
3
-
-
0035317876
-
Proteomic detection of PhoPQ- and acidmediated repression of Salmonella motility
-
Adams P, Fowler R, Kinsella N, Howell G, Farris M, Coote P, O'Connor CD. 2001. Proteomic detection of PhoPQ- and acidmediated repression of Salmonella motility. Proteomics 1:597-607.
-
(2001)
Proteomics
, vol.1
, pp. 597-607
-
-
Adams, P.1
Fowler, R.2
Kinsella, N.3
Howell, G.4
Farris, M.5
Coote, P.6
O'Connor, C.D.7
-
4
-
-
0032489015
-
The cells as a collection of protein machines: Preparing the next generation of molecular biologists
-
Alberts B. 1998. The cells as a collection of protein machines: Preparing the next generation of molecular biologists. Cell 92:291-294.
-
(1998)
Cell
, vol.92
, pp. 291-294
-
-
Alberts, B.1
-
5
-
-
33645721632
-
Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
-
Anderson L, Hunter CL. 2006. Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell Proteom. 5:573-588.
-
(2006)
Mol. Cell Proteom.
, vol.5
, pp. 573-588
-
-
Anderson, L.1
Hunter, C.L.2
-
6
-
-
0033895238
-
Phosphate starvationinducible proteins of Bacillus subtilis: Proteomics and transcriptional analysis
-
Antelmann H, Scharf C, Hecker M. 2000. Phosphate starvationinducible proteins of Bacillus subtilis: Proteomics and transcriptional analysis. J. Bacteriol. 182:4478-4490.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 4478-4490
-
-
Antelmann, H.1
Scharf, C.2
Hecker, M.3
-
7
-
-
35948969847
-
Stenotrophomonas maltophilia SeITE02, a new bacterial strain suitable for bioremediation of selenite-contaminated environmental matrices
-
Antonioli P, Lampis S, Chesini I. 2007. Stenotrophomonas maltophilia SeITE02, a new bacterial strain suitable for bioremediation of selenite-contaminated environmental matrices. Appl. Environ. Microbiol. 73:6854-6863.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6854-6863
-
-
Antonioli, P.1
Lampis, S.2
Chesini, I.3
-
8
-
-
31344461921
-
A study of Streptococcus thermophilus proteome by integrated analytical procedures and differential expression investigations
-
Arena S, D'Ambrosio C, Renzone G, Rullo R, Ledda L, Vitale F, Maglione G, Varcamonti M, Ferrara L, Scaloni A. 2006. A study of Streptococcus thermophilus proteome by integrated analytical procedures and differential expression investigations. Proteomics 6:181-192.
-
(2006)
Proteomics
, vol.6
, pp. 181-192
-
-
Arena, S.1
D'Ambrosio, C.2
Renzone, G.3
Rullo, R.4
Ledda, L.5
Vitale, F.6
Maglione, G.7
Varcamonti, M.8
Ferrara, L.9
Scaloni, A.10
-
9
-
-
30744451442
-
In- gel stable-isotope labeling (ISIL): A strategy for mass spectrometry-based relative quantification
-
Asara JM, Zhang X, Zheng B, Christofk HH, Wu N, Cantley LC. 2006. In-gel stable-isotope labeling (ISIL): A strategy for mass spectrometry-based relative quantification. J. Proteome Res 5:155-163.
-
(2006)
J. Proteome Res
, vol.5
, pp. 155-163
-
-
Asara, J.M.1
Zhang, X.2
Zheng, B.3
Christofk, H.H.4
Wu, N.5
Cantley, L.C.6
-
10
-
-
23844471958
-
Molecular insight into extreme copper resistance in the extremophilic archaeon "Ferroplasma acidarmanus" Fer1
-
Baker-Austin C, Dopson M, Wexler M. 2005. Molecular insight into extreme copper resistance in the extremophilic archaeon "Ferroplasma acidarmanus" Fer1. Microbiology 151:2637-2646.
-
(2005)
Microbiology
, vol.151
, pp. 2637-2646
-
-
Baker-Austin, C.1
Dopson, M.2
Wexler, M.3
-
11
-
-
34248327854
-
Extreme arsenic resistance by the acidophilic archaeon "Ferroplasma acidarmanus" Fer1
-
Baker-Austin C, Dopson M, Wexler M. 2007. Extreme arsenic resistance by the acidophilic archaeon "Ferroplasma acidarmanus" Fer1 Extremophiles 11:425-434.
-
(2007)
Extremophiles
, vol.11
, pp. 425-434
-
-
Baker-Austin, C.1
Dopson, M.2
Wexler, M.3
-
12
-
-
33645215770
-
Signal transduction in bacterial chemotaxis
-
Baker MD, Wolanin PM, Stock JB. 2006. Signal transduction in bacterial chemotaxis. BioEssays 28:9-22.
-
(2006)
BioEssays
, vol.28
, pp. 9-22
-
-
Baker, M.D.1
Wolanin, P.M.2
Stock, J.B.3
-
13
-
-
0037069421
-
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
-
Baliga NS, Pan M, Goo Ya, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. 2002. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc. Natl. Acad. Sci. USA 99:14913-14918.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14913-14918
-
-
Baliga, N.S.1
Pan, M.2
Goo Ya3
Yi, E.C.4
Goodlett, D.R.5
Dimitrov, K.6
Shannon, P.7
Aebersold, R.8
Ng, W.V.9
Hood, L.10
-
14
-
-
33846908531
-
Proteomic profiling of cellular stresses in Bacillus subtilis reveals cellular networks and assists in elucidating antibiotic mechanisms of action
-
Bandow JE, Hecker M. 2007. Proteomic profiling of cellular stresses in Bacillus subtilis reveals cellular networks and assists in elucidating antibiotic mechanisms of action. Prog. Drug Res. 64:81-101.
-
(2007)
Prog. Drug Res.
, vol.64
, pp. 81-101
-
-
Bandow, J.E.1
Hecker, M.2
-
15
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: A critical review
-
Bantscheff M, Schirle M, Sweetman G, Rick J, Kuster B. 2007 Quantitative mass spectrometry in proteomics: A critical review. Anal Bioanal. Chem. 389:1017-1031.
-
(2007)
Anal Bioanal. Chem.
, vol.389
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
Kuster, B.5
-
16
-
-
33748550661
-
Shotgun proteomics of cyanobacteria-Applications of experimental and data-mining techniques Brief
-
Barrios-Llerena ME, Chong PK, Gan CS, Snijders AP, Reardon KF, Wright PC. 2006. Shotgun proteomics of cyanobacteria-Applications of experimental and data-mining techniques Brief. Funct. Genom. Proteom. 5:121-132.
-
(2006)
Funct. Genom. Proteom.
, vol.5
, pp. 121-132
-
-
Barrios-Llerena, M.E.1
Chong, P.K.2
Gan, C.S.3
Snijders, A.P.4
Reardon, K.F.5
Wright, P.C.6
-
17
-
-
0028895181
-
High pressure influences on gene and protein expression
-
Bartlett DH, Kato C, Horikoshi K. 1995. High pressure influences on gene and protein expression. Res. Microbiol. 146:697-706.
-
(1995)
Res. Microbiol.
, vol.146
, pp. 697-706
-
-
Bartlett, D.H.1
Kato, C.2
Horikoshi, K.3
-
18
-
-
0036185884
-
Involvement of superoxide dismutases in the response of Escherichia coli to selenium oxides
-
Bebien M, Lagniel G, Garin J. 2002. Involvement of superoxide dismutases in the response of Escherichia coli to selenium oxides. J Bacteriol. 184:1556-1564.
-
(2002)
J Bacteriol
, vol.184
, pp. 1556-1564
-
-
Bebien, M.1
Lagniel, G.2
Garin, J.3
-
19
-
-
0023405116
-
Membrane ATPases and acid tolerance of Actinomyces viscosus and Lactobacillus casei
-
Bender GR, Marquis RE. 1987. Membrane ATPases and acid tolerance of Actinomyces viscosus and Lactobacillus casei. Appl. Environ Microbiol. 53:2124-2128.
-
(1987)
Appl. Environ Microbiol.
, vol.53
, pp. 2124-2128
-
-
Bender, G.R.1
Marquis, R.E.2
-
21
-
-
0037317457
-
Bacillus subtilis during feast and famine: Visualization of the overall regulation of protein synthesis during glucose starvation by proteome analysis
-
Bernhardt J, Weibezahn J, Scharf C, Hecker M. 2003. Bacillus subtilis during feast and famine: Visualization of the overall regulation of protein synthesis during glucose starvation by proteome analysis. Genome Res. 13:224-237.
-
(2003)
Genome Res
, vol.13
, pp. 224-237
-
-
Bernhardt, J.1
Weibezahn, J.2
Scharf, C.3
Hecker, M.4
-
22
-
-
22144475854
-
Environmental stress, adaptation and evolution: An overview
-
Bijlsma R, Loeschcke V. 2005. Environmental stress, adaptation and evolution: An overview. J. Evol. Biol. 18:744-749.
-
(2005)
J. Evol. Biol.
, vol.18
, pp. 744-749
-
-
Bijlsma, R.1
Loeschcke, V.2
-
23
-
-
0032784646
-
Proteomics: Quantitative and physical mapping of cellular proteins
-
Blackstock WP, Weir MP. 1999. Proteomics: Quantitative and physical mapping of cellular proteins. Trends Biotechnol. 17:121-127.
-
(1999)
Trends Biotechnol
, vol.17
, pp. 121-127
-
-
Blackstock, W.P.1
Weir, M.P.2
-
24
-
-
4444371652
-
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
-
Blagoev B, Ong SE, Kratchmarova I, Mann M. 2004. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat. Biotechnol. 22:1139-1145.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1139-1145
-
-
Blagoev, B.1
Ong, S.E.2
Kratchmarova, I.3
Mann, M.4
-
25
-
-
0038444555
-
Chill induction of the SigB-dependent general stress response in Bacillus subtilis and its contribution to lowtemperature adaptation
-
Brigulla M, Hoffmann T, Krisp A, Voelker A, Bremer E, Voelker U. 2003. Chill induction of the SigB-dependent general stress response in Bacillus subtilis and its contribution to lowtemperature adaptation. J. Bacteriol. 185:4305-4314.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4305-4314
-
-
Brigulla, M.1
Hoffmann, T.2
Krisp, A.3
Voelker, A.4
Bremer, E.5
Voelker, U.6
-
26
-
-
0032489016
-
The Hsp70 and Hsp60 chaperone machines
-
Bukau B, Horwich AL. 1998. The Hsp70 and Hsp60 chaperone machines. Cell 92:351-366.
-
(1998)
Cell
, vol.92
, pp. 351-366
-
-
Bukau, B.1
Horwich, A.L.2
-
27
-
-
41149086763
-
Automated proteomics of Escherichia coli via topdown electron-transfer dissociation mass spectrometry
-
Bunger MK, Cargile BJ, Ngunjiri A, Bundy JL, Stephenson JLJ. 2008. Automated proteomics of Escherichia coli via topdown electron-transfer dissociation mass spectrometry. Anal. Chem 80:1459-1467.
-
(2008)
Anal. Chem
, vol.80
, pp. 1459-1467
-
-
Bunger, M.K.1
Cargile, B.J.2
Ngunjiri, A.3
Bundy, J.L.4
Stephenson, J.L.J.5
-
28
-
-
0034152767
-
Oxidative stress in bacteria and protein damage by reactive oxygen species
-
Cabiscol E, Tamarit J, Ros J. 2000. Oxidative stress in bacteria and protein damage by reactive oxygen species. Int. Microbiol. 3:3-8.
-
(2000)
Int. Microbiol.
, vol.3
, pp. 3-8
-
-
Cabiscol, E.1
Tamarit, J.2
Ros, J.3
-
29
-
-
0036171359
-
De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging
-
Cagney G, Emili A. 2002. De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging. Nat. Biotechnol. 20:163-170.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 163-170
-
-
Cagney, G.1
Emili, A.2
-
30
-
-
0032496137
-
Chaperone properties of bacterial elongation factor EF-Tu
-
Caldas TD, El Yaagoubi A, Richarme G. 1998. Chaperone properties of bacterial elongation factor EF-Tu. J. Biol. Chem 273:11478-11482.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 11478-11482
-
-
Caldas, T.D.1
El Yaagoubi, A.2
Richarme, G.3
-
31
-
-
0035931656
-
Heat resistance of Bacillus cereus
-
Casadei MA, Ingram R, Hitchings E, Archer J, Gaze JE. 2001. Heat resistance of Bacillus cereus, Salmonella typhimurium and Lactobacillus delbrueckii in relation to pH and ethanol. Int. J. Food Microbiol. 63:125-134.
-
(2001)
Salmonella typhimurium and Lactobacillus delbrueckii in relation to pH and ethanol. Int. J. Food Microbiol.
, vol.63
, pp. 125-134
-
-
Casadei, M.A.1
Ingram, R.2
Hitchings, E.3
Archer, J.4
Gaze, J.E.5
-
32
-
-
67349214353
-
Proteomic analyses of the response of cyanobacteria to different stress conditions
-
Castielli O, De la Cerda B, Navarro JA, Hervas M, De la Rosa MA. 2009. Proteomic analyses of the response of cyanobacteria to different stress conditions. FEBS Lett. 583:1753-1758.
-
(2009)
FEBS Lett
, vol.583
, pp. 1753-1758
-
-
Castielli, O.1
De la Cerda, B.2
Navarro, J.A.3
Hervas, M.4
De la Rosa, M.A.5
-
33
-
-
33749615256
-
Mass spectrometry: Bottom-up or top-down ?
-
Chait BT. 2006. Mass spectrometry: Bottom-up or top-down ? Science 314:65-66.
-
(2006)
Science
, vol.314
, pp. 65-66
-
-
Chait, B.T.1
-
34
-
-
0037040607
-
Global internal standard technology for comparative proteomics
-
Chakraborty A, Regnier FE. 2002. Global internal standard technology for comparative proteomics. J. Chromatogr. A 949:173-184.
-
(2002)
J. Chromatogr. A
, vol.949
, pp. 173-184
-
-
Chakraborty, A.1
Regnier, F.E.2
-
35
-
-
66949152206
-
Proteomic analysis of the response to the plant growth-promoting bacterium Pseudomonas putida UW4 to nickel stress
-
Cheng Z, Wei Y-YC, Sung WWL, Glick BR, McConkey BJ. 2009 Proteomic analysis of the response to the plant growth-promoting bacterium Pseudomonas putida UW4 to nickel stress. Proteome Sci. 7:1-8.
-
(2009)
Proteome Sci
, vol.7
, pp. 1-8
-
-
Cheng, Z.1
Wei, Y.-Y.C.2
Sung, W.W.L.3
Glick, B.R.4
McConkey, B.J.5
-
36
-
-
33644748620
-
Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough
-
Chhabra SR, He Q, Huang KH, Gaucher SP, Alm EJ, et al. 2006 Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. J. Bacteriol. 188:1817-1828.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1817-1828
-
-
Chhabra, S.R.1
He, Q.2
Huang, K.H.3
Gaucher, S.P.4
Alm, E.J.5
-
38
-
-
0034739891
-
Proteome analysis of light-induced proteins in Synechocystis sp. PCC 6803 Identification of proteins separated by 2D-PAGE using N-terminal sequencing and MALDITOF MS
-
Choi JS, Kim DS, Lee J, Kim SJ, Kim SI, Kim YH, Hong J, Yoo JS, Suh KH, Park YM. 2000. Proteome analysis of light-induced proteins in Synechocystis sp. PCC 6803: Identification of proteins separated by 2D-PAGE using N-terminal sequencing and MALDITOF MS. Mol. Cells 10:705-711.
-
(2000)
Mol. Cells
, vol.10
, pp. 705-711
-
-
Choi, J.S.1
Kim, D.S.2
Lee, J.3
Kim, S.J.4
Kim, S.I.5
Kim, Y.H.6
Hong, J.7
Yoo, J.S.8
Suh, K.H.9
Park, Y.M.10
-
39
-
-
33847123483
-
Translational and transcriptional analysis of Sulfolobus solfataricus P2 to provide insights into alcohol and ketone utilisation
-
Chong PK, Burja AM, Radianingtyas H, Fazeli A, Wright PC. 2007. Translational and transcriptional analysis of Sulfolobus solfataricus P2 to provide insights into alcohol and ketone utilisation Proteomics 7:424-435.
-
(2007)
Proteomics
, vol.7
, pp. 424-435
-
-
Chong, P.K.1
Burja, A.M.2
Radianingtyas, H.3
Fazeli, A.4
Wright, P.C.5
-
40
-
-
0041358793
-
OLAV: Towards high-throughput tandem mass spectrometry data identification
-
Colinge J, Masselot A, Giron M, Dessingy T, Magnin J. 2003 OLAV: Towards high-throughput tandem mass spectrometry data identification. Proteomics 3:1454-1463.
-
(2003)
Proteomics
, vol.3
, pp. 1454-1463
-
-
Colinge, J.1
Masselot, A.2
Giron, M.3
Dessingy, T.4
Magnin, J.5
-
41
-
-
34548481968
-
Labeling of Bifidobacterium longum cells with 13C-substituted leucine for quantitative proteomic analyses
-
Coute Y, Hernandez C, Appel RD, Sanchez JC, Margolles A. 2007. Labeling of Bifidobacterium longum cells with 13C-substituted leucine for quantitative proteomic analyses. Appl. Environ. Microbiol 73:5653-5656.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 5653-5656
-
-
Coute, Y.1
Hernandez, C.2
Appel, R.D.3
Sanchez, J.C.4
Margolles, A.5
-
42
-
-
33645715370
-
Multiple reaction monitoring as a method for identifying protein posttranslational modifications
-
Cox DM, Zhong F, Du M, Duchoslav E, Sakuma T, McDermott JC. 2005. Multiple reaction monitoring as a method for identifying protein posttranslational modifications. J. Biomol. Tech. 16:83-90.
-
(2005)
J. Biomol. Tech.
, vol.16
, pp. 83-90
-
-
Cox, D.M.1
Zhong, F.2
Du, M.3
Duchoslav, E.4
Sakuma, T.5
McDermott, J.C.6
-
43
-
-
0141955057
-
A method for reducing the time required to match protein sequences with tandem mass spectra
-
Craig R, Beavis RC. 2003. A method for reducing the time required to match protein sequences with tandem mass spectra. Rapid Commun Mass Spectrom. 17:2310-2316.
-
(2003)
Rapid Commun Mass Spectrom
, vol.17
, pp. 2310-2316
-
-
Craig, R.1
Beavis, R.C.2
-
44
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
Craig R, Beavis RC. 2004. TANDEM: Matching proteins with tandem mass spectra. Bioinformatics 20:1466-1467.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
45
-
-
37249014081
-
The biological impact of mass-spectrometry-based proteomics
-
Cravatt BF, Simon GM, Yates J. 2007. The biological impact of mass-spectrometry-based proteomics. Nature 450:991-1000.
-
(2007)
Nature
, vol.450
, pp. 991-1000
-
-
Cravatt, B.F.1
Simon, G.M.2
Yates, J.3
-
46
-
-
0034928457
-
The acid-stress response in Lactobacillus sanfranciscensis CB1
-
De Angelis M, Bini L, Pallini V, Coccnocelli PS, Gobbetti M. 2001. The acid-stress response in Lactobacillus sanfranciscensis CB1 Microbiology 147:1863-1873.
-
(2001)
Microbiology
, vol.147
, pp. 1863-1873
-
-
De Angelis, M.1
Bini, L.2
Pallini, V.3
Coccnocelli, P.S.4
Gobbetti, M.5
-
47
-
-
0036951961
-
Arginine catabolism by sourdough lactic acid bacteria: purification and characterization of the arginine deiminase pathway enzymes from Lactobacillus sanfranciscensis CB1
-
De Angelis M, Mariotti L, Rossi J, Servili M, Fox PF, Rollan G, Gobbetti M. 2002. Arginine catabolism by sourdough lactic acid bacteria: purification and characterization of the arginine deiminase pathway enzymes from Lactobacillus sanfranciscensis CB1. Appl Environ. Microbiol. 68:6193-6201.
-
(2002)
Appl Environ. Microbiol.
, vol.68
, pp. 6193-6201
-
-
De Angelis, M.1
Mariotti, L.2
Rossi, J.3
Servili, M.4
Fox, P.F.5
Rollan, G.6
Gobbetti, M.7
-
48
-
-
45949105215
-
A proteomic approach to iron and copper homeostasis in cyanobacteria
-
De la Cerda B, Castielli O, Duran RV, Navarro JA, Hervas M, De la Rosa MA. 2008. A proteomic approach to iron and copper homeostasis in cyanobacteria. Brief Funct. Genom. Proteom 6:322-329.
-
(2008)
Brief Funct. Genom. Proteom
, vol.6
, pp. 322-329
-
-
De la Cerda, B.1
Castielli, O.2
Duran, R.V.3
Navarro, J.A.4
Hervas, M.5
De la Rosa, M.A.6
-
49
-
-
17444383113
-
Search for cancer markers from endometrial tissues using differentially labeled tags iTRAQ and cICAT with multidimensional liquid chromatography and tandem mass spectrometry J
-
de Souza L, Diehl G, Rodrigues MJ, Guo J, Romaschin AD, Colgan TJ, Siu KW. 2005. Search for cancer markers from endometrial tissues using differentially labeled tags iTRAQ and cICAT with multidimensional liquid chromatography and tandem mass spectrometry J. Proteome Res. 4:377-386.
-
(2005)
Proteome Res
, vol.4
, pp. 377-386
-
-
de Souza, L.1
Diehl, G.2
Rodrigues, M.J.3
Guo, J.4
Romaschin, A.D.5
Colgan, T.J.6
Siu, K.W.7
-
50
-
-
13844271208
-
Protein identification using 2D-LCMS/MS
-
Delahunty C, Yates JR. 2005. Protein identification using 2D-LCMS/MS. Methods 35:248-255.
-
(2005)
Methods
, vol.35
, pp. 248-255
-
-
Delahunty, C.1
Yates, J.R.2
-
51
-
-
0034876617
-
Securing genome stability by orchestrating DNA repair: Removal of radiation-induced clustered lesions in DNA
-
Dianov GL, O'Neill P, Goodhead DT. 2001. Securing genome stability by orchestrating DNA repair: Removal of radiation-induced clustered lesions in DNA. BioEssays 23:745-749.
-
(2001)
BioEssays
, vol.23
, pp. 745-749
-
-
Dianov, G.L.1
O'Neill, P.2
Goodhead, D.T.3
-
52
-
-
33750622611
-
Challenges and opportunities in proteomics data analysis
-
Domon B, Aebersold R. 2006a. Challenges and opportunities in proteomics data analysis. Mol. Cell. Proteom. 5:1921-1926.
-
(2006)
Mol. Cell. Proteom.
, vol.5
, pp. 1921-1926
-
-
Domon, B.1
Aebersold, R.2
-
53
-
-
33645813378
-
Mass spectrometry and protein analysis
-
Domon B, Aebersold R. 2006b. Mass spectrometry and protein analysis Science 312:212-217.
-
(2006)
Science
, vol.312
, pp. 212-217
-
-
Domon, B.1
Aebersold, R.2
-
54
-
-
0030884713
-
Emerging tandem-massspectrometry techniques for the rapid identification of proteins
-
Dongre AR, Eng JK, Yates JR. 1997. Emerging tandem-massspectrometry techniques for the rapid identification of proteins. Trends Biotechnol. 15:418-425.
-
(1997)
Trends Biotechnol
, vol.15
, pp. 418-425
-
-
Dongre, A.R.1
Eng, J.K.2
Yates, J.R.3
-
55
-
-
0028172999
-
The oxidative stress response in Bacillus subtilis
-
Dowds BC. 1994. The oxidative stress response in Bacillus subtilis FEMS Microbiol. 124:155-264.
-
(1994)
FEMS Microbiol
, vol.124
, pp. 155-264
-
-
Dowds, B.C.1
-
56
-
-
0035987521
-
High pressure effects stepwise altered protein expression in Lactobacillus sanfranciscensis
-
Drews O, Weiss W, Reil G, Parlar H, Wait R, Goerg A. 2002. High pressure effects stepwise altered protein expression in Lactobacillus sanfranciscensis. Proteomics 2:765-774.
-
(2002)
Proteomics
, vol.2
, pp. 765-774
-
-
Drews, O.1
Weiss, W.2
Reil, G.3
Parlar, H.4
Wait, R.5
Goerg, A.6
-
57
-
-
0032531568
-
Coupling 2D SDS-PAGE with CNBr cleavage and MALDI-TOFMS: A strategy applied to the identification of proteins induced by a hypochlorous acid stress in Escherichia coli
-
Dukan S, Turlin E, Biville F. 1998. Coupling 2D SDS-PAGE with CNBr cleavage and MALDI-TOFMS: A strategy applied to the identification of proteins induced by a hypochlorous acid stress in Escherichia coli. Anal. Chem. 70:4433-4440.
-
(1998)
Anal. Chem.
, vol.70
, pp. 4433-4440
-
-
Dukan, S.1
Turlin, E.2
Biville, F.3
-
59
-
-
24944463449
-
Posttranslational protein modification in Archaea
-
Eichler J, Adams MW. 2005. Posttranslational protein modification in Archaea. Microbiol. Mol. Biol. Rev. 69:393-425.
-
(2005)
Microbiol. Mol. Biol. Rev.
, vol.69
, pp. 393-425
-
-
Eichler, J.1
Adams, M.W.2
-
60
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng JK, McCormack AL, Yates JRI. 1994. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5:976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.I.3
-
61
-
-
0035750172
-
Toxic metals and oxidative stress part I: Mechanisms involved in metal-induced oxidative damage
-
Ercal N, Gurer-Orhan H, Aykin-Burns N. 2001. Toxic metals and oxidative stress part I: Mechanisms involved in metal-induced oxidative damage. Curr. Top. Med. Chem. 1:529-539.
-
(2001)
Curr. Top. Med. Chem.
, vol.1
, pp. 529-539
-
-
Ercal, N.1
Gurer-Orhan, H.2
Aykin-Burns, N.3
-
62
-
-
5644302167
-
A comprehensive proteome map of growing Bacillus subtilis cells
-
Eymann C, Dreisbach A, Albrecht D, Bernhardt J, Becher D, et al. 2004. A comprehensive proteome map of growing Bacillus subtilis cells. Proteomics 4:2849-2876.
-
(2004)
Proteomics
, vol.4
, pp. 2849-2876
-
-
Eymann, C.1
Dreisbach, A.2
Albrecht, D.3
Bernhardt, J.4
Becher, D.5
-
63
-
-
0029905620
-
Phosphatestarvation-inducible proteins in Bacillus subtilis: A two-dimensional gel electrophoresis study
-
Eymann C, Mach H, Harwood CR, Hecker M. 1996. Phosphatestarvation-inducible proteins in Bacillus subtilis: A two-dimensional gel electrophoresis study. Microbiology 142:3163-3170.
-
(1996)
Microbiology
, vol.142
, pp. 3163-3170
-
-
Eymann, C.1
Mach, H.2
Harwood, C.R.3
Hecker, M.4
-
64
-
-
57649220810
-
A proteome analysis of the cadmium and mercury response in Corynebacterium japonicum
-
Fanous A, Weiss W, Goerg A, Jacob F, Parlar H. 2008. A proteome analysis of the cadmium and mercury response in Corynebacterium japonicum. Proteomics 8:4976-4986.
-
(2008)
Proteomics
, vol.8
, pp. 4976-4986
-
-
Fanous, A.1
Weiss, W.2
Goerg, A.3
Jacob, F.4
Parlar, H.5
-
65
-
-
33748201234
-
Semisupervised LC/MS alignment for differential proteomics
-
Fischer B, Grossmann J, Roth V, Gruissem W, Baginsky S, Buhmann JM. 2006. Semisupervised LC/MS alignment for differential proteomics. Bioinformatics 22: e132-e140.
-
(2006)
Bioinformatics
, vol.22
-
-
Fischer, B.1
Grossmann, J.2
Roth, V.3
Gruissem, W.4
Baginsky, S.5
Buhmann, J.M.6
-
66
-
-
0026347284
-
Inducible pH homeostasis and the acid tolerance response of Salmonella typhimurium
-
Foster JW, Hall HK. 1991. Inducible pH homeostasis and the acid tolerance response of Salmonella typhimurium. J. Bacteriol 173:5129-5135.
-
(1991)
J. Bacteriol
, vol.173
, pp. 5129-5135
-
-
Foster, J.W.1
Hall, H.K.2
-
67
-
-
0033797930
-
Proteomics of Synechocystis sp. strain PCC 6803 Identification of periplasmic protein in cells grown at low and high salt concentrations Eur
-
Fulda S, Huang F, Nilsson F, Hagemann M, Norling B. 2000 Proteomics of Synechocystis sp. strain PCC 6803. Identification of periplasmic protein in cells grown at low and high salt concentrations Eur. J. Biochem. 267:5900-5907.
-
(2000)
J. Biochem.
, vol.267
, pp. 5900-5907
-
-
Fulda, S.1
Huang, F.2
Nilsson, F.3
Hagemann, M.4
Norling, B.5
-
68
-
-
33646724888
-
Proteome analysis of salt stress response in the cyanobacterium Synechocystis sp. strain PCC 6803
-
Fulda S, Mikkat S, Huang F, Huckauf J, Marin K, Norling B, Hagemann M. 2006. Proteome analysis of salt stress response in the cyanobacterium Synechocystis sp. strain PCC 6803. Proteomics 6:2733-2745.
-
(2006)
Proteomics
, vol.6
, pp. 2733-2745
-
-
Fulda, S.1
Mikkat, S.2
Huang, F.3
Huckauf, J.4
Marin, K.5
Norling, B.6
Hagemann, M.7
-
69
-
-
0032447960
-
General stress transcription factor ?B and sporulation transcription factor ?H each contribute to survival of Bacillus subtilis under extreme growth conditions
-
Gaidenko TA, Price CW. 1998. General stress transcription factor ?B and sporulation transcription factor ?H each contribute to survival of Bacillus subtilis under extreme growth conditions. J. Bacteriol 180:3730-3733.
-
(1998)
J. Bacteriol
, vol.180
, pp. 3730-3733
-
-
Gaidenko, T.A.1
Price, C.W.2
-
70
-
-
20544442274
-
Comparison of protein and peptide prefractionation methods for the shotgun proteomic analysis of Synechocystis sp PCC 6803
-
Gan CS, Reardon KF, Wright PC. 2005. Comparison of protein and peptide prefractionation methods for the shotgun proteomic analysis of Synechocystis sp. PCC 6803. Proteomics 5:2468-2478.
-
(2005)
Proteomics
, vol.5
, pp. 2468-2478
-
-
Gan, C.S.1
Reardon, K.F.2
Wright, P.C.3
-
71
-
-
64949130793
-
Identification of the proteomic changes in Synechocystis sp PCC 6803 following prolonged UV-B irradiation
-
Gao Y, Xiong W, Li XB, Gao CF, Zhang YL, Li H, Wu QY. 2009. Identification of the proteomic changes in Synechocystis sp PCC 6803 following prolonged UV-B irradiation. J. Exp. Bot. 60:1141-1154.
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 1141-1154
-
-
Gao, Y.1
Xiong, W.2
Li, X.B.3
Gao, C.F.4
Zhang, Y.L.5
Li, H.6
Wu, Q.Y.7
-
72
-
-
0037196338
-
Top down characterization of larger proteins (45kDa) by electron capture dissociation mass spectrometry J
-
Ge Y, Lawhorn BG, ElNaggar M, Strauss E, Park J-H, Begley TP, McLafferty FW. 2002. Top down characterization of larger proteins (45kDa) by electron capture dissociation mass spectrometry J. Am. Chem. Soc. 124:672-678.
-
(2002)
Am. Chem. Soc.
, vol.124
, pp. 672-678
-
-
Ge, Y.1
Lawhorn, B.G.2
ElNaggar, M.3
Strauss, E.4
Park, J.-H.5
Begley, T.P.6
McLafferty, F.W.7
-
73
-
-
8744300809
-
Multiplexed fluorescence detection of phosphorylation, glycosylation, and total protein in the proteomic analysis of breast cancer refractoriness
-
Ge Y, Rajkumar L, Guzman RC, Nandi S, Patton WF, Agnew BJ. 2004. Multiplexed fluorescence detection of phosphorylation, glycosylation, and total protein in the proteomic analysis of breast cancer refractoriness. Proteomics 4:3464-3467.
-
(2004)
Proteomics
, vol.4
, pp. 3464-3467
-
-
Ge, Y.1
Rajkumar, L.2
Guzman, R.C.3
Nandi, S.4
Patton, W.F.5
Agnew, B.J.6
-
74
-
-
7044246160
-
Open mass spectrometry search algorithm
-
Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH. 2004. Open mass spectrometry search algorithm. J. Proteome Res. 3:958-964.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
75
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber SA, Rush J, Stemman O, Kirschner MW, Gygi SP. 2003 Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. USA 100:6940-6945.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
76
-
-
10644230916
-
Current two-dimensional electrophoresis technology for proteomics
-
Gorg A, Weiss W, Dunn MJ. 2004. Current two-dimensional electrophoresis technology for proteomics. Proteomics 4:3665-3685.
-
(2004)
Proteomics
, vol.4
, pp. 3665-3685
-
-
Gorg, A.1
Weiss, W.2
Dunn, M.J.3
-
77
-
-
0036198666
-
Two- dimensional electrophoresis study of Lactobacillus delbrueckii subsp. bulgaricus thermotolerance Appl
-
Gouesbet G, Jan G, Boyaval P. 2002. Two-dimensional electrophoresis study of Lactobacillus delbrueckii subsp. bulgaricus thermotolerance Appl. Environ. Microbiol. 68:1055-1063.
-
(2002)
Environ. Microbiol.
, vol.68
, pp. 1055-1063
-
-
Gouesbet, G.1
Jan, G.2
Boyaval, P.3
-
78
-
-
33645784124
-
Topdown proteomic analysis of the soluble sub-proteome of the obligate thermophile Geobacillus thermoleovorans T80: Insights into the cellular processes
-
Graham RLJ, Pollock CE, Ternan NG, McMullan G. 2006. Topdown proteomic analysis of the soluble sub-proteome of the obligate thermophile, Geobacillus thermoleovorans T80: Insights into the cellular processes. J. Proteome Res. 5:822-828.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 822-828
-
-
Graham, R.L.J.1
Pollock, C.E.2
Ternan, N.G.3
McMullan, G.4
-
81
-
-
0033002716
-
Cold shock proteins CspB and CspC are major stationary-phase-induced proteins in Bacillus subtilis Arch
-
Graumann PL, Marahiel MA. 1999a. Cold shock proteins CspB and CspC are major stationary-phase-induced proteins in Bacillus subtilis Arch. Microbiol. 171:135-138.
-
(1999)
Microbiol
, vol.171
, pp. 135-138
-
-
Graumann, P.L.1
Marahiel, M.A.2
-
83
-
-
0022972149
-
Starvation proteins in Escherichia coli: Kinetics of synthesis and role in starvation survival
-
Groat RG, Schultz JE, Zychlinsky E, Bockman A, Matin A. 1986 Starvation proteins in Escherichia coli: Kinetics of synthesis and role in starvation survival. J. Bacteriol. 168:486-493.
-
(1986)
J. Bacteriol.
, vol.168
, pp. 486-493
-
-
Groat, R.G.1
Schultz, J.E.2
Zychlinsky, E.3
Bockman, A.4
Matin, A.5
-
84
-
-
26844526643
-
AUDENS: A tool for automated peptide de novo sequencing
-
Grossmann J, Roos FF, Cieliebak M, Liptak Z, Mathis LK, Muller M, Gruissem W, Baginsky S. 2005. AUDENS: A tool for automated peptide de novo sequencing. J. Proteome Res. 4:1768-1774.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 1768-1774
-
-
Grossmann, J.1
Roos, F.F.2
Cieliebak, M.3
Liptak, Z.4
Mathis, L.K.5
Muller, M.6
Gruissem, W.7
Baginsky, S.8
-
85
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi SP, Rist B, Gerber SA, Turacek F, Gelb MH, Aebersold R. 1999. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17:994-999.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turacek, F.4
Gelb, M.H.5
Aebersold, R.6
-
86
-
-
0034662907
-
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
-
Gygi SP, Corthals GL, Zhang Y, Rochon Y, Aebersold R. 2000 Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc. Natl. Acad. Sci. USA 97:9390-9395.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9390-9395
-
-
Gygi, S.P.1
Corthals, G.L.2
Zhang, Y.3
Rochon, Y.4
Aebersold, R.5
-
87
-
-
33749606981
-
Extending topdown mass spectrometry to proteins with masses greater than 200 kilodaltons
-
Han X, Jin M, Breuker K, McLafferty FW. 2006. Extending topdown mass spectrometry to proteins with masses greater than 200 kilodaltons. Science 314:109-112.
-
(2006)
Science
, vol.314
, pp. 109-112
-
-
Han, X.1
Jin, M.2
Breuker, K.3
McLafferty, F.W.4
-
88
-
-
0034012953
-
Biomedical applications of two-dimensional electrophoresis using immobilized pH gradients: Current status
-
Hanash SM. 2000. Biomedical applications of two-dimensional electrophoresis using immobilized pH gradients: Current status. Electrophoresis 21:1202-1209.
-
(2000)
Electrophoresis
, vol.21
, pp. 1202-1209
-
-
Hanash, S.M.1
-
89
-
-
0028141696
-
Starvation-indued stress resistance in Lactococcus lactis subsp lactis IL1403
-
Hartke A, Bouche S, Gansel X, Boutibonnes P, Auffray Y. 1994 Starvation-indued stress resistance in Lactococcus lactis subsp lactis IL1403. Appl. Environ. Microbiol. 60:3474-3478.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3474-3478
-
-
Hartke, A.1
Bouche, S.2
Gansel, X.3
Boutibonnes, P.4
Auffray, Y.5
-
90
-
-
0029741826
-
The lactic acid stress response of Lactococcus lactis subsp. lactis
-
Hartke A, Bouche S, Giard J-C, Benachour A, Boutibonnes P, Auffray Y. 1996. The lactic acid stress response of Lactococcus lactis subsp. lactis. Curr. Microbiol. 33:194-199.
-
(1996)
Curr. Microbiol.
, vol.33
, pp. 194-199
-
-
Hartke, A.1
Bouche, S.2
Giard, J.-C.3
Benachour, A.4
Boutibonnes, P.5
Auffray, Y.6
-
91
-
-
0038621801
-
Reactive oxygen species and UV-B: Effect on cyanobacteria
-
He YY, Haeder D. 2002. Reactive oxygen species and UV-B: Effect on cyanobacteria. Photochem. Photobiol. Sci. 1:729-736.
-
(2002)
Photochem. Photobiol. Sci.
, vol.1
, pp. 729-736
-
-
He, Y.Y.1
Haeder, D.2
-
92
-
-
0034987011
-
General stress response of Bacillus subtilis and other bacteria
-
Hecker M, Voelker U. 2001. General stress response of Bacillus subtilis and other bacteria. Adv. Microb. Physiol. 44:35-91.
-
(2001)
Adv. Microb. Physiol.
, vol.44
, pp. 35-91
-
-
Hecker, M.1
Voelker, U.2
-
93
-
-
10644274361
-
Towards a comprehensive understanding of Bacillus subtilis cell physiology by physiological proteomics
-
Hecker M, Voelker U. 2004. Towards a comprehensive understanding of Bacillus subtilis cell physiology by physiological proteomics Proteomics 4:3727-3750.
-
(2004)
Proteomics
, vol.4
, pp. 3727-3750
-
-
Hecker, M.1
Voelker, U.2
-
94
-
-
0030034307
-
Heat-shock and general stress response in Bacillus subtilis
-
Hecker M, Schumann W, Voelker U. 1996. Heat-shock and general stress response in Bacillus subtilis. Mol. Microbiol. 19:417-428.
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 417-428
-
-
Hecker, M.1
Schumann, W.2
Voelker, U.3
-
95
-
-
57649218829
-
Gelbased proteomics of gram-positive bacteria: A powerful tool to address physiological questions
-
Hecker M, Antelmann H, Buettner K, Bernhardt J. 2008. Gelbased proteomics of gram-positive bacteria: A powerful tool to address physiological questions. Proteomics 8:4958-4975.
-
(2008)
Proteomics
, vol.8
, pp. 4958-4975
-
-
Hecker, M.1
Antelmann, H.2
Buettner, K.3
Bernhardt, J.4
-
96
-
-
67349215276
-
Physiological proteomics and stress/starvation responses in Bacillus subtilis and Staphylococcus aureus
-
Hecker M, Reder A, Fuchs S, Pagels M, Engelmann S. 2009. Physiological proteomics and stress/starvation responses in Bacillus subtilis and Staphylococcus aureus. Res. Microbiol. 160:245-258.
-
(2009)
Res. Microbiol.
, vol.160
, pp. 245-258
-
-
Hecker, M.1
Reder, A.2
Fuchs, S.3
Pagels, M.4
Engelmann, S.5
-
97
-
-
61649111730
-
Analysis of the secretome of the soybean symbiont Bradyrhizobium japonicum J
-
Hempel J, Zehner S, Goettfert M, Patschkowski T. 2009. Analysis of the secretome of the soybean symbiont Bradyrhizobium japonicum J. Biotechnol. 140:51-58.
-
(2009)
Biotechnol
, vol.140
, pp. 51-58
-
-
Hempel, J.1
Zehner, S.2
Goettfert, M.3
Patschkowski, T.4
-
98
-
-
0026330981
-
Trehalose synthesis genes are controlled by the putative sigma factor encoded by rpoS and are involved in stationary-phase thermotolerance in Escherichia coli
-
Hengge-Aronis R, Klein W, Lange R, Rimmele M, Boos W. 1991. Trehalose synthesis genes are controlled by the putative sigma factor encoded by rpoS and are involved in stationary-phase thermotolerance in Escherichia coli. J. Bacteriol. 173:7918-7924.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7918-7924
-
-
Hengge-Aronis, R.1
Klein, W.2
Lange, R.3
Rimmele, M.4
Boos, W.5
-
99
-
-
33645088173
-
Salt stress adaptation of Bacillus subtilis: A physiological proteomics approach
-
Hoeper D, Bernhardt J, Hecker M. 2006. Salt stress adaptation of Bacillus subtilis: A physiological proteomics approach. Proteomics 6:1550-1562.
-
(2006)
Proteomics
, vol.6
, pp. 1550-1562
-
-
Hoeper, D.1
Bernhardt, J.2
Hecker, M.3
-
100
-
-
33745697827
-
The phosphate-starvation response of Bacillus licheniformis
-
Hoi LT, Voigt B, Juergen B, Ehrenreich A, Gottschalk G, Evers S, Feesche J, Maurer KH, Hecker M, Schweder T. 2006. The phosphate-starvation response of Bacillus licheniformis. Proteomics 6:3582-3601.
-
(2006)
Proteomics
, vol.6
, pp. 3582-3601
-
-
Hoi, L.T.1
Voigt, B.2
Juergen, B.3
Ehrenreich, A.4
Gottschalk, G.5
Evers, S.6
Feesche, J.7
Maurer, K.H.8
Hecker, M.9
Schweder, T.10
-
101
-
-
0036335665
-
Heavy metals tolerance of soil denitrifying communities: N2O dynamics
-
Holtan-Hartwig L, Bechmann M, Hoyas TR, Linjordeta R, Bakkenb LR. 2002. Heavy metals tolerance of soil denitrifying communities: N2O dynamics. Soil Biol. Biochem. 34:1181-1190.
-
(2002)
Soil Biol. Biochem.
, vol.34
, pp. 1181-1190
-
-
Holtan-Hartwig, L.1
Bechmann, M.2
Hoyas, T.R.3
Linjordeta, R.4
Bakkenb, L.R.5
-
102
-
-
32944467003
-
Proteomic screening of salt-stress-induced changes in plasma membranes of Synechocystis sp. strain PCC 6803
-
Huang F, Fulda S, Hagemann M, Norling B. 2006. Proteomic screening of salt-stress-induced changes in plasma membranes of Synechocystis sp. strain PCC 6803. Proteomics 6:910-920.
-
(2006)
Proteomics
, vol.6
, pp. 910-920
-
-
Huang, F.1
Fulda, S.2
Hagemann, M.3
Norling, B.4
-
103
-
-
0022310512
-
Chemical changes induced in DNA by ionizing radiation
-
Hutchinson F. 1985. Chemical changes induced in DNA by ionizing radiation. Prog. Nucleic Acid Res. Mol. Biol. 32:115-154.
-
(1985)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.32
, pp. 115-154
-
-
Hutchinson, F.1
-
104
-
-
22844436250
-
Quantitative mouse brain proteomics using culturederived isotope tags as internal standards
-
Ishihama YST, Tabata T, Miyamoto N, Sagane K, Nagasu T, Oda Y. 2005. Quantitative mouse brain proteomics using culturederived isotope tags as internal standards. Nat. Biotechnol 23:617-621.
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 617-621
-
-
Ishihama, Y.S.T.1
Tabata, T.2
Miyamoto, N.3
Sagane, K.4
Nagasu, T.5
Oda, Y.6
-
106
-
-
0023761363
-
Starvation-induced cross protection against heat or H2O2 challenge in Escherichia coli
-
Jenkins DE, Schultz JE, Matin A. 1988. Starvation-induced cross protection against heat or H2O2 challenge in Escherichia coli. J Bacteriol. 170:3910-3914.
-
(1988)
J Bacteriol
, vol.170
, pp. 3910-3914
-
-
Jenkins, D.E.1
Schultz, J.E.2
Matin, A.3
-
107
-
-
0025332515
-
Starvation-induced cross protection against osmotic challenge in Escherichia coli
-
Jenkins DE, Chaisson SA, Matin A. 1990. Starvation-induced cross protection against osmotic challenge in Escherichia coli. J. Bacteriol 172:2779-2781.
-
(1990)
J. Bacteriol
, vol.172
, pp. 2779-2781
-
-
Jenkins, D.E.1
Chaisson, S.A.2
Matin, A.3
-
108
-
-
23844453654
-
Recent advancements in differential proteomics based on stable isotope coding
-
Julka S, Regnier FE. 2005. Recent advancements in differential proteomics based on stable isotope coding. Brief. Funct. Genom. Proteom 4:158-177.
-
(2005)
Brief. Funct. Genom. Proteom
, vol.4
, pp. 158-177
-
-
Julka, S.1
Regnier, F.E.2
-
109
-
-
0031129664
-
Protein identification by 2D-E gels by MALDI mass spectrometry
-
Jungblut P, Thiede B. 1997. Protein identification by 2D-E gels by MALDI mass spectrometry. Mass Spectrom. Rev. 16:145-162.
-
(1997)
Mass Spectrom. Rev.
, vol.16
, pp. 145-162
-
-
Jungblut, P.1
Thiede, B.2
-
110
-
-
52449116251
-
Molecular response of Campylobacter jejuni to cadmium stress
-
Kaakoush NO, Raftery M, Mendz GL. 2008. Molecular response of Campylobacter jejuni to cadmium stress. FEBS J. 275:5021-5033.
-
(2008)
FEBS J
, vol.275
, pp. 5021-5033
-
-
Kaakoush, N.O.1
Raftery, M.2
Mendz, G.L.3
-
111
-
-
23944451618
-
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis
-
Kapp EA, Schuetz F, Connolly LM, Chakel JA, Meza JE, Miller, et al. 2005. An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis. Proteomics 5:3475-3490.
-
(2005)
Proteomics
, vol.5
, pp. 3475-3490
-
-
Kapp, E.A.1
Schuetz, F.2
Connolly, L.M.3
Chakel, J.A.4
Meza, J.E.5
Miller, X.6
-
112
-
-
34249995931
-
Quantitation of target proteins and posttranslational modifications in affinity-based proteomics approaches Expert Rev
-
Kiernan UA. 2007. Quantitation of target proteins and posttranslational modifications in affinity-based proteomics approaches Expert Rev. Proteom. 4:421-428.
-
(2007)
Proteom
, vol.4
, pp. 421-428
-
-
Kiernan, U.A.1
-
113
-
-
34648822321
-
A proteomics strategy for the analysis of bacterial biodegradation pathways
-
Kim SI, Choi JS, Kahng HY. 2007. A proteomics strategy for the analysis of bacterial biodegradation pathways. OMICS 11:280-294.
-
(2007)
OMICS
, vol.11
, pp. 280-294
-
-
Kim, S.I.1
Choi, J.S.2
Kahng, H.Y.3
-
114
-
-
13444260275
-
The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications
-
Kirkpatrick DS, Gerber SA, Gygi SP. 2005. The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications. Methods 35:265-273.
-
(2005)
Methods
, vol.35
, pp. 265-273
-
-
Kirkpatrick, D.S.1
Gerber, S.A.2
Gygi, S.P.3
-
115
-
-
0036426322
-
The cell membrane plays a crucial role in survival of bacteria and archaea in extreme environments
-
Konings WN, Albers S-V, Koning S, Driessen AJM. 2002. The cell membrane plays a crucial role in survival of bacteria and archaea in extreme environments. Antonie van Leeuwenhoek 81:61-72.
-
(2002)
Antonie van Leeuwenhoek
, vol.81
, pp. 61-72
-
-
Konings, W.N.1
Albers, S.-V.2
Koning, S.3
Driessen, A.J.M.4
-
116
-
-
0035861920
-
The chaperonins of Synechocystis PCC 6803 differ in heat inducibility and chaperone activity
-
Kovacs E, van der Vies SM, Glatz A, Toeroek Z, Varvasovszki V, Horvath I, Vigh L. 2001. The chaperonins of Synechocystis PCC 6803 differ in heat inducibility and chaperone activity. Biochem Biophys. Res. Commun. 289:908-915.
-
(2001)
Biochem Biophys. Res. Commun.
, vol.289
, pp. 908-915
-
-
Kovacs, E.1
van der Vies, S.M.2
Glatz, A.3
Toeroek, Z.4
Varvasovszki, V.5
Horvath, I.6
Vigh, L.7
-
117
-
-
33745711866
-
Proteomic characterization of acid stress response in Synechocystis sp
-
Kurian D, Phadwal K, Maeenpaeae P. 2006. Proteomic characterization of acid stress response in Synechocystis sp. PCC 6803 Proteomics 6:3614-3624.
-
(2006)
PCC 6803 Proteomics
, vol.6
, pp. 3614-3624
-
-
Kurian, D.1
Phadwal, K.2
Maeenpaeae, P.3
-
118
-
-
33947577004
-
Metaproteomic analysis of a bacterial community response to cadmium exposure
-
Lacerda CMR, Choe LH, Reardon KF. 2007. Metaproteomic analysis of a bacterial community response to cadmium exposure. J. Proteome Res. 6:1145-1152.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 1145-1152
-
-
Lacerda, C.M.R.1
Choe, L.H.2
Reardon, K.F.3
-
119
-
-
0026020230
-
Identification of a central regulator of stationary-phase gene expression in Escherichia coli
-
Lange R, Hengge-Aronis R. 1991. Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol Microbiol. 5:49-59.
-
(1991)
Mol Microbiol
, vol.5
, pp. 49-59
-
-
Lange, R.1
Hengge-Aronis, R.2
-
120
-
-
43049090085
-
Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring
-
Lange V, Malmstroem JA, Didion J, King NL, Johansson BP, et al. 2008a. Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring. Mol. Cell. Proteom 7:1489-1500.
-
(2008)
Mol. Cell. Proteom
, vol.7
, pp. 1489-1500
-
-
Lange, V.1
Malmstroem, J.A.2
Didion, J.3
King, N.L.4
Johansson, B.P.5
-
121
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: A tutorial
-
Lange V, Picotti P, Domon B, Aebersold R. 2008b. Selected reaction monitoring for quantitative proteomics: A tutorial. Mol. Syst. Biol. 4: 222.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
122
-
-
0037334843
-
Global characterization of disulfide stress in Bacillus subtilis
-
Leichert LI, Scharf C, Hecker M. 2003. Global characterization of disulfide stress in Bacillus subtilis. J. Bacteriol. 185:1967-1975.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1967-1975
-
-
Leichert, L.I.1
Scharf, C.2
Hecker, M.3
-
123
-
-
46149125288
-
Quantifying changes in the thiol redox proteome upon oxidative stress in vivo
-
Leichert LI, Gehrke F, Gudiseva HV, Blackwell T, Ilbert M, Walker AK, Strahler JR, Andrews PC, Jakob U. 2008. Quantifying changes in the thiol redox proteome upon oxidative stress in vivo. Proc. Natl. Acad. Sci. USA 105:8197-8202.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 8197-8202
-
-
Leichert, L.I.1
Gehrke, F.2
Gudiseva, H.V.3
Blackwell, T.4
Ilbert, M.5
Walker, A.K.6
Strahler, J.R.7
Andrews, P.C.8
Jakob, U.9
-
124
-
-
33750594230
-
Chemistry meets proteomics: The use of chemical tagging reactions for MS-based proteomics
-
Leithner A, Lindner W. 2006. Chemistry meets proteomics: The use of chemical tagging reactions for MS-based proteomics. Proteomics 6:5418-5434.
-
(2006)
Proteomics
, vol.6
, pp. 5418-5434
-
-
Leithner, A.1
Lindner, W.2
-
125
-
-
18144420399
-
Insights into the oxidative stress response in Francisella tularensis LVS and its mutant DeltaiglC1+2 by proteomic analysis
-
Lenco J, Pavkova I, Hubalek M, Stulik J. 2005. Insights into the oxidative stress response in Francisella tularensis LVS and its mutant DeltaiglC1+2 by proteomic analysis. FEMS. Microbiol. Lett. 246:47-54.
-
(2005)
FEMS. Microbiol. Lett.
, vol.246
, pp. 47-54
-
-
Lenco, J.1
Pavkova, I.2
Hubalek, M.3
Stulik, J.4
-
126
-
-
0033931002
-
Identification of stressinducible proteins in Lactobacillus delbrueckii subsp
-
Lim EM, Ehrlich SD, Maguin E. 2000. Identification of stressinducible proteins in Lactobacillus delbrueckii subsp. bulgaricus Electrophoresis 21:2557-2561.
-
(2000)
bulgaricus Electrophoresis
, vol.21
, pp. 2557-2561
-
-
Lim, E.M.1
Ehrlich, S.D.2
Maguin, E.3
-
127
-
-
0033051101
-
Direct anlaysis of protein complexes using mass spectrometry
-
Link AJ, Eng J, Schieltz DM, Carmack E, Mize GJ, Morris DR, Garvik BM, Yates JR. 1999. Direct anlaysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17:676-682.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 676-682
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
Carmack, E.4
Mize, G.J.5
Morris, D.R.6
Garvik, B.M.7
Yates, J.R.8
-
128
-
-
33750601225
-
Proteome informatics II: Bioinformatics for comparative proteomics
-
Lisacek F, Cohen-Boulakia S, Appel RD. 2006 Proteome informatics II: Bioinformatics for comparative proteomics. Proteomics 6:5445-5466.
-
(2006)
Proteomics
, vol.6
, pp. 5445-5466
-
-
Lisacek, F.1
Cohen-Boulakia, S.2
Appel, R.D.3
-
129
-
-
0035104482
-
A low-pH-inducible, stationaryphase acid tolerance response inLactobacillus acidophilus CRL 639 Curr
-
Lorca GL, Font de Valdez G. 2001. A low-pH-inducible, stationaryphase acid tolerance response inLactobacillus acidophilus CRL 639 Curr. Microbiol. 42:21-25.
-
(2001)
Microbiol
, vol.42
, pp. 21-25
-
-
Lorca, G.L.1
Font de Valdez, G.2
-
130
-
-
67349202042
-
Stress responses in Synechocystis: Regulated genes and regulatory systems
-
Norfolk, VA: Caister Academic Press, In Herrero A, Flores E, eds
-
Los DA, Suzuki I, Zinchenko VV, Murata N. 2008. Stress responses in Synechocystis: Regulated genes and regulatory systems. In Herrero A, Flores E, eds. The Cyanobacteria: Molecular Biology, Genomics and Evolution. Norfolk, VA: Caister Academic Press, pp 117-157.
-
(2008)
The Cyanobacteria: Molecular Biology, Genomics and Evolution
, pp. 117-157
-
-
Los, D.A.1
Suzuki, I.2
Zinchenko, V.V.3
Murata, N.4
-
131
-
-
0036731568
-
Effects of high pressure on the viability, morphology, lysis, and cell wall hydrolase activity of Lactococcus lactis subsp. cremoris
-
Malone AS, Shellhammer TH, Courtney PD. 2002. Effects of high pressure on the viability, morphology, lysis, and cell wall hydrolase activity of Lactococcus lactis subsp. cremoris. Appl. Environ. Microbiol. 68:4357-4363.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4357-4363
-
-
Malone, A.S.1
Shellhammer, T.H.2
Courtney, P.D.3
-
132
-
-
0037338365
-
Proteomic analysis of post-translational modifications
-
Mann M, Jensen ON. 2003. Proteomic analysis of post-translational modifications. Nat. Biotechnol. 21:255-261.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 255-261
-
-
Mann, M.1
Jensen, O.N.2
-
133
-
-
0028575316
-
Error-tolerant identification of peptides in sequence databases by peptide sequence tags
-
Mann M, Wilm M. 1994. Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem 66:4390-4399.
-
(1994)
Anal. Chem
, vol.66
, pp. 4390-4399
-
-
Mann, M.1
Wilm, M.2
-
134
-
-
2442514028
-
Effect of high concentration of Co (II) on Enterobacter liquefaciens strain C-1: A bacterium highly resistant to heavy metals with an unknown genome
-
Marrero J, Gonzalez LJ, Sanchez A, Ayala M, Paz-Lago D, Gonzalez W, Fallarero A, Castellanos-Serra L, Coto O. 2004. Effect of high concentration of Co (II) on Enterobacter liquefaciens strain C-1: A bacterium highly resistant to heavy metals with an unknown genome. Proteomics 4:1265-1279.
-
(2004)
Proteomics
, vol.4
, pp. 1265-1279
-
-
Marrero, J.1
Gonzalez, L.J.2
Sanchez, A.3
Ayala, M.4
Paz-Lago, D.5
Gonzalez, W.6
Fallarero, A.7
Castellanos-Serra, L.8
Coto, O.9
-
135
-
-
66149117914
-
Proteomic analysis by two-dimensional differential gel electrophoresis (2D DIGE) of a high-pressure effect in Bacillus cereus
-
Martinez-Gomariz M, Hernaez ML, Gutierrez D, Ximenez-Embun P, Prestamo G. 2009. Proteomic analysis by two-dimensional differential gel electrophoresis (2D DIGE) of a high-pressure effect in Bacillus cereus. J. Agric. Food Chem. 57:3543-3549.
-
(2009)
J. Agric. Food Chem.
, vol.57
, pp. 3543-3549
-
-
Martinez-Gomariz, M.1
Hernaez, M.L.2
Gutierrez, D.3
Ximenez-Embun, P.4
Prestamo, G.5
-
136
-
-
33845631601
-
Microbial metabolomics: Past, present and future methodologies
-
Mashego MR, Rumbold K, De Mey M, Vandamme E, Soetaert W, Heijnen JJ. 2007. Microbial metabolomics: Past, present and future methodologies. Biotechnol. Lett. 29:1-16.
-
(2007)
Biotechnol. Lett.
, vol.29
, pp. 1-16
-
-
Mashego, M.R.1
Rumbold, K.2
De Mey, M.3
Vandamme, E.4
Soetaert, W.5
Heijnen, J.J.6
-
137
-
-
65349151292
-
Heat pretreatment alleviates UV-B toxicity in the cyanobacterium Anabaena doliolum: A proteomic analysis of cross tolerance
-
Mishra Y, Chaurasia N, Rai LC. 2009. Heat pretreatment alleviates UV-B toxicity in the cyanobacterium Anabaena doliolum: A proteomic analysis of cross tolerance. Photochem. Photobiol 85:824-833.
-
(2009)
Photochem. Photobiol
, vol.85
, pp. 824-833
-
-
Mishra, Y.1
Chaurasia, N.2
Rai, L.C.3
-
138
-
-
0036727268
-
In situ determination of the intracellular pH of Lactococcus lactis and Lactobacillus plantarum during pressure treatment
-
Molina-Guitierrez A, Stippl V, Delgado A, Gaenzle MG, Vogel RF. 2002. In situ determination of the intracellular pH of Lactococcus lactis and Lactobacillus plantarum during pressure treatment. Appl Environ. Microbiol. 68:4399-4406.
-
(2002)
Appl Environ. Microbiol.
, vol.68
, pp. 4399-4406
-
-
Molina-Guitierrez, A.1
Stippl, V.2
Delgado, A.3
Gaenzle, M.G.4
Vogel, R.F.5
-
139
-
-
1242318677
-
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress
-
Mostertz J, Scharf C, Hecker M, Homuth G. 2004. Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress. Microbiology 150:497-512.
-
(2004)
Microbiology
, vol.150
, pp. 497-512
-
-
Mostertz, J.1
Scharf, C.2
Hecker, M.3
Homuth, G.4
-
140
-
-
38649095599
-
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
-
Mueller LN, Brusniak M-Y, Mani DR, Aebersold R. 2008. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J. Proteome Res. 7:51-61.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 51-61
-
-
Mueller, L.N.1
Brusniak, M.-Y.2
Mani, D.R.3
Aebersold, R.4
-
141
-
-
33744776637
-
Salt stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics approach
-
Mukhopadhyay A, He Z, Alm EJ, Arkin AP, Baidoo EE, et al. 2006 Salt stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics approach. J. Bacteriol. 188:4068-4078.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 4068-4078
-
-
Mukhopadhyay, A.1
He, Z.2
Alm, E.J.3
Arkin, A.P.4
Baidoo, E.E.5
-
143
-
-
28544433960
-
MASPIC: Intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence
-
Narasimhan C, Tabb DL, Verberkmoes NC, Thompson MR, Hettich RL, Uberbacher EC. 2005. MASPIC: Intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence. Anal. Chem. 77:7581-7593.
-
(2005)
Anal. Chem.
, vol.77
, pp. 7581-7593
-
-
Narasimhan, C.1
Tabb, D.L.2
Verberkmoes, N.C.3
Thompson, M.R.4
Hettich, R.L.5
Uberbacher, E.C.6
-
144
-
-
35348860923
-
Proteomics for the analysis of environmental stress responses in organisms
-
Nesatyy VJ, Suter MJ-F. 2007. Proteomics for the analysis of environmental stress responses in organisms. Environ. Sci. Technol 41:6891-6900.
-
(2007)
Environ. Sci. Technol
, vol.41
, pp. 6891-6900
-
-
Nesatyy, V.J.1
Suter, M.-F.2
-
145
-
-
57249108230
-
Analysis of environmental stress response on the proteome level
-
Nesatyy VJ, Suter MJ-F. 2008. Analysis of environmental stress response on the proteome level. Mass Spectrom. Rev. 27:556-574.
-
(2008)
Mass Spectrom. Rev.
, vol.27
, pp. 556-574
-
-
Nesatyy, V.J.1
Suter, M.-F.2
-
146
-
-
10044290651
-
Cold adaptation in the antarctic archaeon Methanococcoides burtonii involves membrane lipid unsaturation
-
Nichols DS, Miller MR, Davies NW, Goodchild A, Raftery M, Cavicchioli R. 2004. Cold adaptation in the antarctic archaeon Methanococcoides burtonii involves membrane lipid unsaturation. J Bacteriol. 186:8508-8515.
-
(2004)
J Bacteriol
, vol.186
, pp. 8508-8515
-
-
Nichols, D.S.1
Miller, M.R.2
Davies, N.W.3
Goodchild, A.4
Raftery, M.5
Cavicchioli, R.6
-
147
-
-
0033709566
-
Safety valves for photosynthesis
-
Niyogi KK. 2000. Safety valves for photosynthesis. Curr. Opin. Plant Biol. 3:455-460.
-
(2000)
Curr. Opin. Plant Biol.
, vol.3
, pp. 455-460
-
-
Niyogi, K.K.1
-
148
-
-
18844464043
-
Global analysis of the Ralstonia metallidurans proteome: Prelude for the large-scale study of heavy metal response
-
Noeel-Georis I, Vallaeys T, Chauvaux R, Monchy S, Falmagne P, Mergeay M, Wattiez R. 2004. Global analysis of the Ralstonia metallidurans proteome: Prelude for the large-scale study of heavy metal response. Proteomics 4:151-179.
-
(2004)
Proteomics
, vol.4
, pp. 151-179
-
-
Noeel-Georis, I.1
Vallaeys, T.2
Chauvaux, R.3
Monchy, S.4
Falmagne, P.5
Mergeay, M.6
Wattiez, R.7
-
149
-
-
0026557123
-
Survival, stress resistance, and alterations in protein expression in the marine Vibrio sp strain S14 during starvation for different individual nutrients
-
Nystroem T, Olsson RM, Kjelleberg S. 1992. Survival, stress resistance, and alterations in protein expression in the marine Vibrio sp strain S14 during starvation for different individual nutrients. Appl Environ. Microbiol. 58:55-65.
-
(1992)
Appl Environ. Microbiol.
, vol.58
, pp. 55-65
-
-
Nystroem, T.1
Olsson, R.M.2
Kjelleberg, S.3
-
150
-
-
0035067251
-
Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
-
Oda Y, Nagasu T, Chait BT. 2001. Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nat Biotechnol. 19:379-382.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 379-382
-
-
Oda, Y.1
Nagasu, T.2
Chait, B.T.3
-
151
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, is a simple and accurate approach to expression proteomics
-
Ong S-E, Blagoev B, Kratchmarova I, Bach Kristensen D, Steen H, Pandey A, Mann M. 2002. Stable isotope labeling by amino acids in cell culture, SILAC, is a simple and accurate approach to expression proteomics. Mol. Cell. Proteom. 1:376-386.
-
(2002)
Mol. Cell. Proteom.
, vol.1
, pp. 376-386
-
-
Ong, S.-E.1
Blagoev, B.2
Kratchmarova, I.3
Bach Kristensen, D.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
152
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong SE, Mann M. 2005. Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 1:252-262.
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
153
-
-
0033013288
-
Relationship between acid tolerance, cytoplasmic pH, and ATP and H+-ATPase levels in chemostat cultures of Lactococcus lactis
-
O'Sullivan E, Condon S. 1999. Relationship between acid tolerance, cytoplasmic pH, and ATP and H+-ATPase levels in chemostat cultures of Lactococcus lactis. Appl. Environ. Microbiol. 65:2287-2293.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2287-2293
-
-
O'Sullivan, E.1
Condon, S.2
-
154
-
-
0033929213
-
Relationship between membrane damage and cell death in pressure-treated Escherichia coli cells: Differences between exponential- and stationary-phase cells and variation among strains
-
Pagan R, Mackey B. 2000. Relationship between membrane damage and cell death in pressure-treated Escherichia coli cells: Differences between exponential- and stationary-phase cells and variation among strains. Appl. Environ. Microbiol. 66:2829-2834.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2829-2834
-
-
Pagan, R.1
Mackey, B.2
-
155
-
-
33750600611
-
Proteome informatics I: Bioinformatics tools for processing experimental data
-
Palagi PM, Hernandez P, Walther D, Appel RD. 2006. Proteome informatics I: Bioinformatics tools for processing experimental data Proteomics 6:5435-5444.
-
(2006)
Proteomics
, vol.6
, pp. 5435-5444
-
-
Palagi, P.M.1
Hernandez, P.2
Walther, D.3
Appel, R.D.4
-
156
-
-
44049105535
-
Experimental and computational approaches to quantitative proteomics: Status quo and outlook
-
Panchaud A, Affolter M, Moreillon P, Kussmann M. 2008 Experimental and computational approaches to quantitative proteomics: Status quo and outlook. J. Proteom. 71:19-33.
-
(2008)
J. Proteom.
, vol.71
, pp. 19-33
-
-
Panchaud, A.1
Affolter, M.2
Moreillon, P.3
Kussmann, M.4
-
157
-
-
33947578259
-
A quantitative proteomic analysis of light adaptation in a globally significant marine cyanobacterium Prochlorococcus marinus MED4
-
Pandhal J, Wright PC, Biggs CA. 2007. A quantitative proteomic analysis of light adaptation in a globally significant marine cyanobacterium Prochlorococcus marinus MED4. J. Proteome Res 6:996-1005.
-
(2007)
J. Proteome Res
, vol.6
, pp. 996-1005
-
-
Pandhal, J.1
Wright, P.C.2
Biggs, C.A.3
-
158
-
-
61849116800
-
Comparative proteomics study of salt tolerance between a nonsequenced extremely halotolerant Cyanobacterium and its mildly halotolerant relative using in vivo metabolic labeling and in vitro isobaric labeling
-
Pandhal J, Ow SY, Wright PC, Biggs CA. 2009. Comparative proteomics study of salt tolerance between a nonsequenced extremely halotolerant Cyanobacterium and its mildly halotolerant relative using in vivo metabolic labeling and in vitro isobaric labeling. J. Proteome Res. 8:818-828.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 818-828
-
-
Pandhal, J.1
Ow, S.Y.2
Wright, P.C.3
Biggs, C.A.4
-
159
-
-
33751110612
-
Proteomic identification of a two-component regulatory system in Pseudoalteromonas haloplanktis TAC125
-
Papa R, Glagla S, Danchin A, Schweder T, Marino G, Duilio A. 2006. Proteomic identification of a two-component regulatory system in Pseudoalteromonas haloplanktis TAC125. Extremophiles 10:483-491.
-
(2006)
Extremophiles
, vol.10
, pp. 483-491
-
-
Papa, R.1
Glagla, S.2
Danchin, A.3
Schweder, T.4
Marino, G.5
Duilio, A.6
-
160
-
-
12944269065
-
Rapid identification of proteins by peptide-mass fingerprinting
-
Pappin DJC, Hojrup P, Bleasby AJ. 1993. Rapid identification of proteins by peptide-mass fingerprinting. Curr. Biol. 3:327-332.
-
(1993)
Curr. Biol.
, vol.3
, pp. 327-332
-
-
Pappin, D.J.C.1
Hojrup, P.2
Bleasby, A.J.3
-
161
-
-
50949106204
-
Candidate stress genes of Nitrosomonas europaea for monitoring inhibition of nitrification by heavy metals Appl
-
Park S, Ely RL. 2008. Candidate stress genes of Nitrosomonas europaea for monitoring inhibition of nitrification by heavy metals Appl. Environ. Microbiol. 74:5475-5482.
-
(2008)
Environ. Microbiol.
, vol.74
, pp. 5475-5482
-
-
Park, S.1
Ely, R.L.2
-
162
-
-
0018129628
-
Effect of growth temperature on membrane fatty acid composition and susceptibility to cold shock of Bacillus amyloliquefaciens
-
Paton JC, McMurchie EJ, May BK, Elliott WH. 1978. Effect of growth temperature on membrane fatty acid composition and susceptibility to cold shock of Bacillus amyloliquefaciens. J. Bacteriol 135:754-759.
-
(1978)
J. Bacteriol
, vol.135
, pp. 754-759
-
-
Paton, J.C.1
McMurchie, E.J.2
May, B.K.3
Elliott, W.H.4
-
163
-
-
37549066316
-
Roles of ring-hydroxylating dioxygenases in styrene and benzene catabolism in Rhodococcus jostii RHA1
-
Patrauchan MA, Florizone C, Eapen S, Gomez-Gil L, Sethuraman B, Fukuda M, Davies J, Mohn WW, Eltis LD. 2008. Roles of ring-hydroxylating dioxygenases in styrene and benzene catabolism in Rhodococcus jostii RHA1. J. Bacteriol. 190:37-47.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 37-47
-
-
Patrauchan, M.A.1
Florizone, C.2
Eapen, S.3
Gomez-Gil, L.4
Sethuraman, B.5
Fukuda, M.6
Davies, J.7
Mohn, W.W.8
Eltis, L.D.9
-
164
-
-
0033434080
-
Probabilitybased protein identification by searching sequence databases using mass spectrometry data
-
Perkins DN, Pappin DJ, Creasy DM, Cottrell JS. 1999. Probabilitybased protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
165
-
-
0032728896
-
Expression of a new cold shock protein of 21 5kDa and of the major cold shock protein by Streptococcus thermophilus after cold shock
-
Perrin C, Guimont c, Bracquart P, Gaillard JL. 1999. Expression of a new cold shock protein of 21.5kDa and of the major cold shock protein by Streptococcus thermophilus after cold shock. Curr Microbiol. 39:342-347.
-
(1999)
Curr Microbiol
, vol.39
, pp. 342-347
-
-
Perrin, C.1
Guimont, C.2
Bracquart, P.3
Gaillard, J.L.4
-
167
-
-
0030935908
-
Hsp30, the integral plasma membrane heat shock protein of Saccharomyces cerevisiae, is a stress-inducible regulator of plasma membrane H+-ATPase
-
Piper PW, Ortiz-Calderon C, Holyoak C, Coote P, Cole M. 1997. Hsp30, the integral plasma membrane heat shock protein of Saccharomyces cerevisiae, is a stress-inducible regulator of plasma membrane H+-ATPase. Cell Stress Chaperones 2:12-24.
-
(1997)
Cell Stress Chaperones
, vol.2
, pp. 12-24
-
-
Piper, P.W.1
Ortiz-Calderon, C.2
Holyoak, C.3
Coote, P.4
Cole, M.5
-
168
-
-
0035312314
-
Translation control: Bridging the gap between genomics and proteomics
-
Pradet-Balade B, Boulme F, Beug H, Muellner EW, Garcia-Sanz JA. 2001. Translation control: Bridging the gap between genomics and proteomics. Trends Biochem. Sci. 26:225-229.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 225-229
-
-
Pradet-Balade, B.1
Boulme, F.2
Beug, H.3
Muellner, E.W.4
Garcia-Sanz, J.A.5
-
169
-
-
33847179916
-
Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
-
Pratt JM, Simpson DM, Doherty MK, Rivers J, Gaskell SJ, Beynon RJ. 2006. Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes Nat. Protoc. 1:1029-1043.
-
(2006)
Nat Protoc
, vol.1
, pp. 1029-1043
-
-
Pratt, J.M.1
Simpson, D.M.2
Doherty, M.K.3
Rivers, J.4
Gaskell, S.J.5
Beynon, R.J.6
-
171
-
-
0030442663
-
Alteration in photosynthetic characteristics of Anabaena doliolum following exposure to UV-B and Pb
-
Rai LC, Tyagi B, Mallick N. 1996. Alteration in photosynthetic characteristics of Anabaena doliolum following exposure to UV-B and Pb. Photochem. Photobiol. 64:658-663.
-
(1996)
Photochem. Photobiol.
, vol.64
, pp. 658-663
-
-
Rai, L.C.1
Tyagi, B.2
Mallick, N.3
-
172
-
-
33748533479
-
Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics
-
Redding AM, Mukhopadhyay A, Joyner DC, Hazen TC, Keasling JD. 2006. Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics. Brief Funct. Genom. Proteom 5:133-143.
-
(2006)
Brief Funct. Genom. Proteom
, vol.5
, pp. 133-143
-
-
Redding, A.M.1
Mukhopadhyay, A.2
Joyner, D.C.3
Hazen, T.C.4
Keasling, J.D.5
-
173
-
-
33646840898
-
Differential proteomic analysis in the study of prokaryotes stress resistance
-
Renzone G, D'Ambrosio C, Arena S, Rullo R, Ledda L, Ferrara L, Scaloni A. 2005. Differential proteomic analysis in the study of prokaryotes stress resistance. Ann. Ist Super Sanita 41:459-468.
-
(2005)
Ann. Ist Super Sanita
, vol.41
, pp. 459-468
-
-
Renzone, G.1
D'Ambrosio, C.2
Arena, S.3
Rullo, R.4
Ledda, L.5
Ferrara, L.6
Scaloni, A.7
-
174
-
-
3042737683
-
Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics
-
Resing KA, Meyer-Arendt K, Mendoza AM, Aveline-Wolf LD, et al. 2004. Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics. Anal. Chem. 76:3556-3568.
-
(2004)
Anal. Chem.
, vol.76
, pp. 3556-3568
-
-
Resing, K.A.1
Meyer-Arendt, K.2
Mendoza, A.M.3
Aveline-Wolf, L.D.4
-
175
-
-
0027954494
-
Free radicals in biology: Oxidative stress and the effects of ionizing radiation
-
Riley PA. 1994. Free radicals in biology: Oxidative stress and the effects of ionizing radiation. Int. J. Radiat. Biol. 65:27-33.
-
(1994)
Int. J. Radiat. Biol.
, vol.65
, pp. 27-33
-
-
Riley, P.A.1
-
176
-
-
19944432197
-
Multiplexed protein quantification in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross PL, Huang YLN, Marchese JN, Pappin DJC. 2004. Multiplexed protein quantification in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 3:1154-1169.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.L.N.2
Marchese, J.N.3
Pappin, D.J.C.4
-
177
-
-
33846604134
-
A topdown/bottom-up study of the ribosomal proteins of Caulobacter crescentus J
-
Running WE, Ravipaty S, Karty JA, Reilly JP. 2007. A topdown/bottom-up study of the ribosomal proteins of Caulobacter crescentus J. Proteome Res. 6:337-347.
-
(2007)
Proteome Res
, vol.6
, pp. 337-347
-
-
Running, W.E.1
Ravipaty, S.2
Karty, J.A.3
Reilly, J.P.4
-
178
-
-
0035831256
-
Osmolytes protect mitochondrial F0F1-ATPase complex against pressure inactivation Biochim
-
Saad-Nehme J, Silva JL, Meyer-Fernandes J. 2001. Osmolytes protect mitochondrial F0F1-ATPase complex against pressure inactivation Biochim. Biophys. Acta 1546:164-170.
-
(2001)
Biophys. Acta
, vol.1546
, pp. 164-170
-
-
Saad-Nehme, J.1
Silva, J.L.2
Meyer-Fernandes, J.3
-
179
-
-
23644445359
-
Proteomic analysis of global changes in protein expression during bile salt exposure of Bifidobacterium longum NCIMB 8809
-
Sanchez A, Champomier-Verges MC, Anglade P, Baraige F, de Los Reyes-Gavilan CG, Margolles A, Zagorec M. 2005. Proteomic analysis of global changes in protein expression during bile salt exposure of Bifidobacterium longum NCIMB 8809. J. Bacteriol 187:5799-5808.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5799-5808
-
-
Sanchez, A.1
Champomier-Verges, M.C.2
Anglade, P.3
Baraige, F.4
de Los Reyes-Gavilan, C.G.5
Margolles, A.6
Zagorec, M.7
-
180
-
-
35448990451
-
Low- pH adaptation and the acid tolerance response of Bifidobacterium longum biotype longum
-
Sanchez B, Champomier-Verges MC, Collado Mdel C, Anglade P, Baraige F, Sanz Y, De los Reyes-Gavilan CG, Margolles A, Zagorec M. 2007. Low-pH adaptation and the acid tolerance response of Bifidobacterium longum biotype longum. Appl. Environ Microbiol. 73:6450-6459.
-
(2007)
Appl. Environ Microbiol.
, vol.73
, pp. 6450-6459
-
-
Sanchez, B.1
Champomier-Verges, M.C.2
Collado Mdel, C.3
Anglade, P.4
Baraige, F.5
Sanz, Y.6
De Los Reyes-Gavilan, C.G.7
Margolles, A.8
Zagorec, M.9
-
182
-
-
0024075420
-
Differential regulation by cyclic AMP of starvation protein synthesis in Escherichia coli
-
Schultz JE, Latter GI, Matin A. 1988. Differential regulation by cyclic AMP of starvation protein synthesis in Escherichia coli. J Bacteriol. 170:3903-3909.
-
(1988)
J Bacteriol
, vol.170
, pp. 3903-3909
-
-
Schultz, J.E.1
Latter, G.I.2
Matin, A.3
-
183
-
-
0033650048
-
The chemistry of protein sequence analysis
-
Shively JE. 2000. The chemistry of protein sequence analysis. EXS 88:99-117.
-
(2000)
EXS
, vol.88
, pp. 99-117
-
-
Shively, J.E.1
-
184
-
-
33750584707
-
Proteomics and metabolomics: The molecular make-up of toxic aromatic pollutant bioremediation
-
Singh OV. 2006. Proteomics and metabolomics: The molecular make-up of toxic aromatic pollutant bioremediation. Proteomics 6:5481-5492.
-
(2006)
Proteomics
, vol.6
, pp. 5481-5492
-
-
Singh, O.V.1
-
185
-
-
0029865908
-
Effect of UV irradiation on certain physiological and biochemical processes in cyanobacterium
-
Sinha RP, Singh N, Kumar A, Kumar HD, Haeder M, Haeder DP. 1996. Effect of UV irradiation on certain physiological and biochemical processes in cyanobacterium. J. Photochem. Photobiol. B 32:107-113.
-
(1996)
J. Photochem. Photobiol. B
, vol.32
, pp. 107-113
-
-
Sinha, R.P.1
Singh, N.2
Kumar, A.3
Kumar, H.D.4
Haeder, M.5
Haeder, D.P.6
-
186
-
-
32944474675
-
Proteomic analysis of the heat shock response in Synechocystis PCC6803 and a thermally tolerant knockout strain lacking the histidine kinase 34 gene
-
Slabas AR, Suzuki I, Murata N, Simon WJ, Hall JJ. 2006. Proteomic analysis of the heat shock response in Synechocystis PCC6803 and a thermally tolerant knockout strain lacking the histidine kinase 34 gene. Proteomics 6:845-864.
-
(2006)
Proteomics
, vol.6
, pp. 845-864
-
-
Slabas, A.R.1
Suzuki, I.2
Murata, N.3
Simon, W.J.4
Hall, J.J.5
-
187
-
-
33846638822
-
Relative quantification of proteins across the species boundary through the use of shared peptides
-
Snijders AP, de Koning B, Wright PC. 2007. Relative quantification of proteins across the species boundary through the use of shared peptides. J. Proteome Res. 6:97-104.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 97-104
-
-
Snijders, A.P.1
de Koning, B.2
Wright, P.C.3
-
188
-
-
54349095175
-
Genes and environment-Striking the fine balance between sophisticated biomonitoring and true functional environmental genomics
-
Steinberg CE, Stuerzenbaum SR, Menzel R. 2008. Genes and environment-Striking the fine balance between sophisticated biomonitoring and true functional environmental genomics. Sci. Total Environ. 400:142-161.
-
(2008)
Sci. Total Environ.
, vol.400
, pp. 142-161
-
-
Steinberg, C.E.1
Stuerzenbaum, S.R.2
Menzel, R.3
-
189
-
-
53149123972
-
Emerging high-throughput approaches to analyze bioremediation of sites contaminated with hazardous and/or recalcitrant waters
-
Stenuit B, Eyers L, Schuler L, Agathos SN, George I. 2008 Emerging high-throughput approaches to analyze bioremediation of sites contaminated with hazardous and/or recalcitrant waters. Biotechnol Adv. 26:561-575.
-
(2008)
Biotechnol Adv
, vol.26
, pp. 561-575
-
-
Stenuit, B.1
Eyers, L.2
Schuler, L.3
Agathos, S.N.4
George, I.5
-
190
-
-
0030965758
-
ATP- dependent proteases that also chaperone protein biogenesis
-
Suzuki CK, Rep M, Maarten van Dijl J, Suda K, Grivell LA, Schatz G. 1997. ATP-dependent proteases that also chaperone protein biogenesis. Trends Biochem. Sci. 22:118-123.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 118-123
-
-
Suzuki, C.K.1
Rep, M.2
Maarten van Dijl, J.3
Suda, K.4
Grivell, L.A.5
Schatz, G.6
-
191
-
-
33646265040
-
The heat shock response of Synechocystis sp PCC 6803 analysed by transcriptomics and proteomics
-
Suzuki I, Simon WJ, Slabas AR. 2006. The heat shock response of Synechocystis sp. PCC 6803 analysed by transcriptomics and proteomics J. Exp. Bot. 57:1573-1578.
-
(2006)
J. Exp. Bot.
, vol.57
, pp. 1573-1578
-
-
Suzuki, I.1
Simon, W.J.2
Slabas, A.R.3
-
192
-
-
3042789073
-
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
-
Syka JE, Coon JJ, Schroeder MJ, Shabanowitz J, Hunt DF. 2004 Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proc. Natl. Acad. Sci. USA 101:9528-9533.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 9528-9533
-
-
Syka, J.E.1
Coon, J.J.2
Schroeder, M.J.3
Shabanowitz, J.4
Hunt, D.F.5
-
193
-
-
3543005992
-
Comparative genomics in salt tolerance between Arabidopsis and Arabidopsis-related halophyte salt cress using Arabidopsis microarray
-
Taji T, Seki M, Satou M, Sakurai T, Kobayashi M, Ishiyama K, Narusaka Y, Narusaka M, Zhu JK, Shinozaki K. 2004. Comparative genomics in salt tolerance between Arabidopsis and Arabidopsis-related halophyte salt cress using Arabidopsis microarray. Plant Physiol. 135:1697-1709.
-
(2004)
Plant Physiol
, vol.135
, pp. 1697-1709
-
-
Taji, T.1
Seki, M.2
Satou, M.3
Sakurai, T.4
Kobayashi, M.5
Ishiyama, K.6
Narusaka, Y.7
Narusaka, M.8
Zhu, J.K.9
Shinozaki, K.10
-
194
-
-
33748358169
-
Proteome signatures for stress and starvation in Bacillus subtilis as revealed by a 2-D gel image color coding approach
-
Tam LT, Antelmann H, Eymann C, Albrecht D, Bernhardt J, Hecker M. 2006. Proteome signatures for stress and starvation in Bacillus subtilis as revealed by a 2-D gel image color coding approach. Proteomics 6:4565-4585.
-
(2006)
Proteomics
, vol.6
, pp. 4565-4585
-
-
Tam, L.T.1
Antelmann, H.2
Eymann, C.3
Albrecht, D.4
Bernhardt, J.5
Hecker, M.6
-
195
-
-
0030755723
-
Identification of sites of injury in Lactobacillus bulgaricus during heat stress J
-
Teixeira P, Castro H, Mohacsi-Farkas C, Kirby R. 1997. Identification of sites of injury in Lactobacillus bulgaricus during heat stress J. Appl. Microbiol. 83:219-226.
-
(1997)
Appl. Microbiol.
, vol.83
, pp. 219-226
-
-
Teixeira, P.1
Castro, H.2
Mohacsi-Farkas, C.3
Kirby, R.4
-
197
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson A, Schaefer J, Kuhn K, Kienle S, Schwarz J, Schmidt G, Neumann T, Hamon C. 2003. Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 75:1895-1904.
-
(2003)
Anal. Chem.
, vol.75
, pp. 1895-1904
-
-
Thompson, A.1
Schaefer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Hamon, C.8
-
198
-
-
0023490019
-
Developments in protein microsequencing
-
Tsugita A. 1987. Developments in protein microsequencing. Adv. Biophys 23:81-113.
-
(1987)
Adv. Biophys
, vol.23
, pp. 81-113
-
-
Tsugita, A.1
-
199
-
-
0032899676
-
Induction and enhancement of stress proteins in a trichloroethylene-degrading methanotrophic bacterium
-
Uchiyama H, Shinohara Y, Tomioka N, Kusakabe I. 1999. Induction and enhancement of stress proteins in a trichloroethylene-degrading methanotrophic bacterium, Methylocystis sp. M. FEMS MIcrobiol Lett. 170:125-130.
-
(1999)
Methylocystis sp. M. FEMS MIcrobiol Lett.
, vol.170
, pp. 125-130
-
-
Uchiyama, H.1
Shinohara, Y.2
Tomioka, N.3
Kusakabe, I.4
-
200
-
-
0343376097
-
Difference gel electrophoresis: a single gel method for detecting changes in protein extracts
-
Unlue M, Morgan ME, Minden JS. 1997. Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18:2071-2077.
-
(1997)
Electrophoresis
, vol.18
, pp. 2071-2077
-
-
Unlue, M.1
Morgan, M.E.2
Minden, J.S.3
-
201
-
-
1242328741
-
Fluorescent two-dimensional difference gel electrophoresis unveils the potential of gel-based proteomics Curr
-
van den Bergh G, Arckens L. 2004. Fluorescent two-dimensional difference gel electrophoresis unveils the potential of gel-based proteomics Curr. Opin. Biotechnol. 15:38-43.
-
(2004)
Opin. Biotechnol.
, vol.15
, pp. 38-43
-
-
van den Bergh, G.1
Arckens, L.2
-
202
-
-
0025328743
-
Ribosomes as sensors of heat and cold shock in Escherichia coli
-
VanBogelen RA, Neidhardt FC. 1990. Ribosomes as sensors of heat and cold shock in Escherichia coli. Proc. Natl. Acad. Sci. USA 87:5589-5593.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 5589-5593
-
-
VanBogelen, R.A.1
Neidhardt, F.C.2
-
203
-
-
22744450094
-
From genomics via proteomics to cellular physiology of the Gram-positive model organism Bacillus subtilis Cell
-
Voelker U, Hecker M. 2005. From genomics via proteomics to cellular physiology of the Gram-positive model organism Bacillus subtilis Cell. Microbiol. 7:1077-1085.
-
(2005)
Microbiol
, vol.7
, pp. 1077-1085
-
-
Voelker, U.1
Hecker, M.2
-
204
-
-
2442593658
-
A proteomic view of cell physiology of Bacillus licheniformis
-
Voigt B, Schweder T, Becher D, Ehrenreich A, Gottschalk G, Feesche J, Maurer KH, Hecker M. 2004. A proteomic view of cell physiology of Bacillus licheniformis. Proteomics 4:1465-1490.
-
(2004)
Proteomics
, vol.4
, pp. 1465-1490
-
-
Voigt, B.1
Schweder, T.2
Becher, D.3
Ehrenreich, A.4
Gottschalk, G.5
Feesche, J.6
Maurer, K.H.7
Hecker, M.8
-
205
-
-
35448967750
-
Top- down quantitation and characterization of SILAC-labeled proteins
-
Waanders LF, Hanke S, Mann M. 2007. Top-down quantitation and characterization of SILAC-labeled proteins. J. Am. Soc. Mass Spectrom 18:2058-2064.
-
(2007)
J. Am. Soc. Mass Spectrom
, vol.18
, pp. 2058-2064
-
-
Waanders, L.F.1
Hanke, S.2
Mann, M.3
-
206
-
-
34248654099
-
The proteomic alterations of Thermoanaerobacter tengcongensis cultured at different temperatures
-
Wang J, Zhao CB, Meng B, Xie J, Zhou C, Chen X, Zhao K, Shao J, Xue Y, Xu N, Ma Y, Liu S. 2007. The proteomic alterations of Thermoanaerobacter tengcongensis cultured at different temperatures Proteomics 7:1409-1419.
-
(2007)
Proteomics
, vol.7
, pp. 1409-1419
-
-
Wang, J.1
Zhao, C.B.2
Meng, B.3
Xie, J.4
Zhou, C.5
Chen, X.6
Zhao, K.7
Shao, J.8
Xue, Y.9
Xu, N.10
Ma, Y.11
Liu, S.12
-
207
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nat
-
Washburn MP, Wolters D, Yates JR. 2001. Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nat. Biotechnol. 19:242-247.
-
(2001)
Biotechnol
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates, J.R.3
-
208
-
-
1942455710
-
Oxidative stress triggers thiol oxidation in the glyceraldehyde-3-phosphate dehydrogenase of Staphylococcus aureus
-
Weber H, Engelmann S, Becher D, Hecker M. 2004. Oxidative stress triggers thiol oxidation in the glyceraldehyde-3-phosphate dehydrogenase of Staphylococcus aureus. Mol. Microbiol. 52:133-140.
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 133-140
-
-
Weber, H.1
Engelmann, S.2
Becher, D.3
Hecker, M.4
-
209
-
-
0036081377
-
CSDBase: An interactive database for cold shock domain-containing proteins and the bacterial cold shock response
-
Weber MHW, Fricke I, Doll N, Marahiel MA. 2002. CSDBase: An interactive database for cold shock domain-containing proteins and the bacterial cold shock response. Nucleic Acids Res. 30: 375-378.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 375-378
-
-
Weber, M.H.W.1
Fricke, I.2
Doll, N.3
Marahiel, M.A.4
-
211
-
-
33846071911
-
An integrated systems approach for understanding cellular responses to gamma radiation
-
Whitehead K, Kish A, Pan M, Kaur A, Reiss DJ, King N, Hohmann L, DiRuggiero J, Baliga NS. 2006. An integrated systems approach for understanding cellular responses to gamma radiation. Mol. Syst Biol. 2: 47.41-47.46.
-
(2006)
Mol. Syst Biol.
, vol.2
, pp. 41-47
-
-
Whitehead, K.1
Kish, A.2
Pan, M.3
Kaur, A.4
Reiss, D.J.5
King, N.6
Hohmann, L.7
DiRuggiero, J.8
Baliga, N.S.9
-
212
-
-
0030028208
-
Current challenges and future applications for protein maps and post-translational vector maps in proteome projects
-
Wilkins MR, Sanchez J-C, Williams KL, Hochstrasse DF. 1996 Current challenges and future applications for protein maps and post-translational vector maps in proteome projects. Electrophoresis 17:830-838.
-
(1996)
Electrophoresis
, vol.17
, pp. 830-838
-
-
Wilkins, M.R.1
Sanchez, J.-C.2
Williams, K.L.3
Hochstrasse, D.F.4
-
213
-
-
0026648953
-
Characterization of cspB, a Bacillus subtilis inducible cold shock gene affecting cell viability at low temperatures
-
Willimsky G, Bang H, Fischer G, Marahiel MA. 1992. Characterization of cspB, a Bacillus subtilis inducible cold shock gene affecting cell viability at low temperatures. J. Bacteriol. 174:6326-6335.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6326-6335
-
-
Willimsky, G.1
Bang, H.2
Fischer, G.3
Marahiel, M.A.4
-
214
-
-
0030026070
-
Femtomole sequencing of proteins from polyacrlyamide gels by nano-electrospray mass spectrometry
-
Wilm M, Shevchenko A, Houthaeve T, Breit S, Schweigerer L, Fotsis T, Mann M. 1996. Femtomole sequencing of proteins from polyacrlyamide gels by nano-electrospray mass spectrometry. Nature 379:466-469.
-
(1996)
Nature
, vol.379
, pp. 466-469
-
-
Wilm, M.1
Shevchenko, A.2
Houthaeve, T.3
Breit, S.4
Schweigerer, L.5
Fotsis, T.6
Mann, M.7
-
215
-
-
4344646435
-
The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms
-
Wilmes P, Bond PL. 2004. The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms. Environ. Microbiol. 6:911-920.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 911-920
-
-
Wilmes, P.1
Bond, P.L.2
-
216
-
-
34250722602
-
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
-
Wolf-Yadlin A, Hautaniemi S, Lauffenburger DA, White FM. 2007. Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc. Natl. Acad. Sci. USA 104:5860-5865.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 5860-5865
-
-
Wolf-Yadlin, A.1
Hautaniemi, S.2
Lauffenburger, D.A.3
White, F.M.4
-
217
-
-
49749101196
-
Proteomic analysis of antioxidant strategies of Staphylococcus aureus: Diverse responses to different oxidants
-
Wolf C, Hochgraefe F, Kusch H, Albrecht D, Hecker M, Engelmann S. 2008. Proteomic analysis of antioxidant strategies of Staphylococcus aureus: Diverse responses to different oxidants. Proteomics 8:3139-3153.
-
(2008)
Proteomics
, vol.8
, pp. 3139-3153
-
-
Wolf, C.1
Hochgraefe, F.2
Kusch, H.3
Albrecht, D.4
Hecker, M.5
Engelmann, S.6
-
218
-
-
33746295997
-
Gel- free and gel-based proteomics in Bacillus subtilis
-
Wolff S, Otto A, Albrecht D, Stahl Zeng J, Buettner K, Glueckmann M, Hecker M, Becher D. 2006. Gel-free and gel-based proteomics in Bacillus subtilis. Mol. Cell. Proteom 5:1183-1192.
-
(2006)
Mol. Cell. Proteom
, vol.5
, pp. 1183-1192
-
-
Wolff, S.1
Otto, A.2
Albrecht, D.3
Stahl Zeng, J.4
Buettner, K.5
Glueckmann, M.6
Hecker, M.7
Becher, D.8
-
219
-
-
42049094894
-
Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments
-
Wong JW, Sullivan MJ, Cagney G. 2008. Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments. Brief Bioinform. 9:156-165.
-
(2008)
Brief Bioinform
, vol.9
, pp. 156-165
-
-
Wong, J.W.1
Sullivan, M.J.2
Cagney, G.3
-
220
-
-
0031890795
-
Effects of high pressure on inactivation kinetics and events related to proton efflux in Lactobacillus plantarum
-
Wouters PC, Glaasker E, Smelt JP. 1998. Effects of high pressure on inactivation kinetics and events related to proton efflux in Lactobacillus plantarum. Appl. Environ. Microbiol. 64:509-514.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 509-514
-
-
Wouters, P.C.1
Glaasker, E.2
Smelt, J.P.3
-
221
-
-
0032696567
-
Analysis of the role of 7kDa cold-shock proteins of Lactococcus lactis MG1363 in cryoprotection
-
Wouters JA, Jeynov B, Rombouts FM, de Vos WM, Kuipers OP, Abee T. 1999a. Analysis of the role of 7kDa cold-shock proteins of Lactococcus lactis MG1363 in cryoprotection. Microbiology 145:3185-3194.
-
(1999)
Microbiology
, vol.145
, pp. 3185-3194
-
-
Wouters, J.A.1
Jeynov, B.2
Rombouts, F.M.3
de Vos, W.M.4
Kuipers, O.P.5
Abee, T.6
-
222
-
-
0032855719
-
Cold shock proteins and low-temperature response of Streptococcus thermophilus CNRZ302
-
Wouters JA, Rombouts FM, de Vos WM, Kuipers OP, Abee T. 1999b. Cold shock proteins and low-temperature response of Streptococcus thermophilus CNRZ302. Appl. Environ. Microbiol 65:4436-4442.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 4436-4442
-
-
Wouters, J.A.1
Rombouts, F.M.2
de Vos, W.M.3
Kuipers, O.P.4
Abee, T.5
-
223
-
-
0033831506
-
Changes in glycolytic activity of Lactococcus lactis induced by low temperature
-
Wouters JA, Kamphuis HH, Hugenholtz J, Kuipers OP, De Vos WM, Abee T. 2000. Changes in glycolytic activity of Lactococcus lactis induced by low temperature. Appl. Environ. Microbiol 66:3686-3691.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 3686-3691
-
-
Wouters, J.A.1
Kamphuis, H.H.2
Hugenholtz, J.3
Kuipers, O.P.4
De Vos, W.M.5
Abee, T.6
-
224
-
-
33746571946
-
Two- dimensional difference gel electrophoresis
-
Wu TL. 2006. Two-dimensional difference gel electrophoresis. Methods Mol. Biol. 328:71-95.
-
(2006)
Methods Mol. Biol.
, vol.328
, pp. 71-95
-
-
Wu, T.L.1
-
225
-
-
73249128251
-
Top- down identification of protein biomarkers in bacteria with unsequenced genomes
-
Wynne C, Fenselau C, Demirev PA, Edwards N. 2009. Top-down identification of protein biomarkers in bacteria with unsequenced genomes. Anal. Chem. 81:9633-9642.
-
(2009)
Anal. Chem.
, vol.81
, pp. 9633-9642
-
-
Wynne, C.1
Fenselau, C.2
Demirev, P.A.3
Edwards, N.4
-
226
-
-
0036746524
-
Mapping of phosphorylated proteins on two-dimensional polyacrylamide gels using protein phosphatase
-
Yamagata A, Kristensen DB, Takeda Y, Miyamoto Y, Okada K, Inamatsu M, Yoshizato K. 2002. Mapping of phosphorylated proteins on two-dimensional polyacrylamide gels using protein phosphatase Proteomics 2:1267-1276.
-
(2002)
Proteomics
, vol.2
, pp. 1267-1276
-
-
Yamagata, A.1
Kristensen, D.B.2
Takeda, Y.3
Miyamoto, Y.4
Okada, K.5
Inamatsu, M.6
Yoshizato, K.7
-
227
-
-
47249144784
-
Extracellular proteome changes of Deinococcus radiodurans under gamma-irradiation stress conditions
-
Ying N, Zheng Z, Xu H, Tian B, Hua Y. 2008. Extracellular proteome changes of Deinococcus radiodurans under gamma-irradiation stress conditions. Protein Pept. Lett. 15:595-599.
-
(2008)
Protein Pept. Lett.
, vol.15
, pp. 595-599
-
-
Ying, N.1
Zheng, Z.2
Xu, H.3
Tian, B.4
Hua, Y.5
-
228
-
-
33750987637
-
Detecting differential and correlated protein expression in label-free shotgun proteomics
-
Zhang B, VerBerkmoes NC, Langston MA, Uberbacher E, Hettich RL, Samatova NF. 2006. Detecting differential and correlated protein expression in label-free shotgun proteomics. J. Proteome Res 5:2909-2918.
-
(2006)
J. Proteome Res
, vol.5
, pp. 2909-2918
-
-
Zhang, B.1
VerBerkmoes, N.C.2
Langston, M.A.3
Uberbacher, E.4
Hettich, R.L.5
Samatova, N.F.6
-
229
-
-
13244258359
-
Proteomic analysis of Deinococcus radiodurans recovering from gamma-irradiation
-
Zhang C, Wei J, Zheng Z. 2005. Proteomic analysis of Deinococcus radiodurans recovering from gamma-irradiation. Proteomics 5:138-143.
-
(2005)
Proteomics
, vol.5
, pp. 138-143
-
-
Zhang, C.1
Wei, J.2
Zheng, Z.3
-
230
-
-
67049095501
-
Proteomic analysis of plasma membranes of cyanobacterium Synechocystis sp. strain PCC 6803 in response to high pH stress
-
Zhang L-F, Yang H-M, Cui S-X, Hu J, Wang J, Kuang T-Y, Norling B, Huang F. 2009. Proteomic analysis of plasma membranes of cyanobacterium Synechocystis sp. strain PCC 6803 in response to high pH stress. J. Proteome Res. 8:2892-2902.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 2892-2902
-
-
Zhang, L.-F.1
Yang, H.-M.2
Cui, S.-X.3
Hu, J.4
Wang, J.5
Kuang, T.-Y.6
Norling, B.7
Huang, F.8
-
231
-
-
70350247861
-
Modification-specific proteomics: Strategies for characterization of post-translational modifications using enrichment techniques
-
Zhao Y, Jensen ON. 2009. Modification-specific proteomics: Strategies for characterization of post-translational modifications using enrichment techniques. Proteomics 9:4632-4641.
-
(2009)
Proteomics
, vol.9
, pp. 4632-4641
-
-
Zhao, Y.1
Jensen, O.N.2
|