An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis

Proteomics

Volumn 5, Issue 13, 2005, Pages 3475-3490

  Kapp, Eugene A ^a   Schütz, Frédéric ^a   Connolly, Lisa M ^a   Chakel, John A ^b   Meza, Jose E ^b   Miller, Christine A ^b   Fenyo, David ^c   Eng, Jimmy K ^d   Adkins, Joshua N ^e   Omenn, Gilbert S ^f   Simpson, Richard J ^a,g  

^a WALTER AND ELIZA HALL INSTITUTE OF MEDICAL RESEARCH   (Australia)

^b AGILENT TECHNOLOGIES   (United States)

^c GE HEALTHCARE   (United States)

^d INSTITUTE FOR SYSTEMS BIOLOGY   (United States)

^e PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

^f UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^g ROYAL MELBOURNE HOSPITAL   (Australia)

Author keywords

MASCOT; Mass Spectrometry; PeptideProphet; SEQUEST; Sonar; Spectrum Mill; X!Tandem

Indexed keywords

ALGORITHM; ARTICLE; EVALUATION; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; SENSITIVITY AND SPECIFICITY; VALIDATION PROCESS;

ALGORITHMS; BENCHMARKING; BLOOD PROTEINS; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; FALSE POSITIVE REACTIONS; HUMANS; INTERNET; MASS SPECTROMETRY; PEPTIDES; PROTEOMICS; REFERENCE STANDARDS; ROC CURVE; SENSITIVITY AND SPECIFICITY; SOFTWARE; TRYPSIN;

EID: 23944451618     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200500126     Document Type: Article

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