CSDBase: An interactive database for cold shock domain-containing proteins and the bacterial cold shock response

Nucleic Acids Research

Volumn 30, Issue 1, 2002, Pages 375-378

  Weber, Michael H W ^a   Fricke, Ingo ^a   Doll, Niclas ^a   Marahiel, Mohamed A ^a  

^a PHILIPPS UNIVERSITY MARBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COLD SHOCK PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CALCULATION; CHEMICAL MODEL; COMPUTER INTERFACE; COMPUTER PROGRAM; CRYSTAL STRUCTURE; CSDBASE; INFORMATION PROCESSING; INTERNET; MEDICAL RESEARCH; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN STRUCTURE; SCIENTIFIC LITERATURE; SEQUENCE DATABASE;

BACTERIA (MICROORGANISMS);

EID: 0036081377     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.1.375     Document Type: Article

References (34)

1. The Y-box factors: A family of nucleic acid binding proteins conserved from Escherichia coli to man
2. A superfamily of proteins containing the cold shock domain
3. Solution NMR structure of the cold-shock protein from the hyperthermophilic bacterium Thermotoga maritima
4. Thermal stability and atomic-resolution crystal structure of the Bacillus caldolyticus cold shock protein
5. Solution NMR structure of the major cold shock protein (CspA) from Escherichia coli: Identification of a binding epitope for DNA
6. Universal nucleic acid-binding domain revealed by crystal structure of the B. subtilis major cold-shock protein
7. Crystal structure of CspA, the major cold shock protein of Escherichia coli
8. Structure in solution of the major cold-shock protein from Bacillus subtilis
9. Major cold shock proteins, CspA from Escherichia coli and CspB from Bacillus subtilis, interact differently with single-stranded DNA templates
10. Interactions of the major cold shock protein of Bacillus subtilis CspB with single-stranded DNA templates of different base composition
11. Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli
12. Mutational analysis of the putative nucleic acid-binding surface of the cold-shock domain, CspB, revealed an essential role of aromatic and basic residues in binding of single-stranded DNA containing the Y-box motif
13. Plant glycine-rich proteins: A family or just proteins with a common motif?
14. Activities of cold-shock domain proteins in translation control
15. Interaction of the main cold shock protein CS7.4 (CspA) of Escherichia coli with the promoter region of hns
16. CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone
17. Escherichia coli CspA-family RNA chaperones are transcription antiterminators
18. Overproduction of three genes leads to camphor resistance and chromosome condensation in Escherichia coli
19. Growth-phase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli
20. CspD, a novel DNA replication inhibitor induced during the stationary phase in Escherichia coli
21. A family of cold shock proteins in Bacillus subtilis is essential for cellular growth and for efficient protein synthesis at optimal and low temperatures
22. Localization of cold shock proteins to cytosolic spaces surrounding nucleoids in Bacillus subtilis depends on active transcription
23. Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription
24. Complementation of cold shock proteins by translation initiation factor IF1 in vivo
25. Database resources of the National Center for Biotechnology Information
26. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
27. Protein modeling by E-mail
28. ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling
29. Errors in protein structures
30. WHAT IF: A molecular modelling and drug design program
31. The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences
32. Cold shock response in Bacillus subtilis
33. Cold shock response in Escherichia coli
34. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling