Proteomics of stress response in Bifidobacterium

Frontiers in Bioscience

Volumn 13, Issue 18, 2008, Pages 6905-6919

  Sanchez, Borja ^a,b   Ruiz, Lorena ^a   De Los Reyes Gavilan, Clara G ^a   Margolles, Abelardo ^a  

^a DEPARTMENT OF MICROBIOLOGY AND BIOCHEMISTRY OF DAIRY PRODUCTS   (Spain)

^b CNRS   (France)

Author keywords

Bifidobacterium; Proteomics; Review; Stress

Indexed keywords

BIFIDOBACTERIUM;

BACTERIAL PROTEIN; HEAT SHOCK PROTEIN;

BIFIDOBACTERIUM; BILE; GASTROINTESTINAL TRACT; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYSIOLOGY; PROTEOMICS; REVIEW;

BACTERIAL PROTEINS; BIFIDOBACTERIUM; BILE; GASTROINTESTINAL TRACT; HEAT-SHOCK PROTEINS; HUMANS; PROTEOMICS;

EID: 52049107593     PISSN: 27686701     EISSN: 27686698     Source Type: Journal    
DOI: 10.2741/3198     Document Type: Review

References (93)

1. S. R. Gill, M. Pop, R. T. Deboy, P. B. Eckburg, P. J. Turnbaugh, B. S. Samuel, J. I. Gordon, D. A. Relman, C. M. Fraser-Liggett and K. E. Nelson: Metagenomic analysis of the human distal gut microbiome. Science 312, 1355-1359 (2006) (Pubitemid 43839542)
2. P. B. Eckburg, E. M. Bik, C. N. Bernstein, E. Purdom, L. Dethlefsen, M. Sargent, S. R. Gill, K. E. Nelson and D. A. Relman: Diversity of the human intestinal microbial flora. Science 308, 1635-1638 (2005) (Pubitemid 40807514)
3. S. J. Salminen, M. Gueimonde and E. Isolauri: Probiotics that modify disease risk. The Journal of Nutrition 135, 1294-1298 (2005) (Pubitemid 40638351)
4. H. J. M. Harmsen, G. R. Gibson, P. Elfferich, G. C. Raangs, A. C. M. Wildeboer-Veloo, A. Argaiz, M. B. Roberfroid and G. W. Welling: Comparison of viable cell counts and fluorescence in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria. FEMS Microbiology Letters 183, 125-129 (2000) (Pubitemid 30067735)
5. M. A. Schell, M. Karmirantzou, B. Snel, D. Vilanova, B. Berger, G. Pessi, M. C. Zwahlen, F. Desiere, P. Bork, M. Delley, R. D. Pridmore and F. Arigoni: The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proceedings of the National Academy of Sciences of the United States of America 99, 14422-14427 (2002) (Pubitemid 35257687)
6. N. G. Anderson and N. L. Anderson: Twenty years of two-dimensional electrophoresis: past, present and future. Electrophoresis 17, 443-453 (1996) (Pubitemid 26126779)
7. P. R. Graves and T. A. Haystead: Molecular biologist's guide to proteomics. Microbiology and Molecular Biology Reviews 66, 39-63 (2002) (Pubitemid 34213968)
8. A. Gorg, G. Boguth, C. Obermaier and W. Weiss: Twodimensional electrophoresis of proteins in an immobilized pH 4-12 gradient. Electrophoresis 19, 1516-1519 (1998) (Pubitemid 28312438)
9. M. Ventura, M. O'connell-Motherway, S. Leahy, J. A. Moreno-Muñoz, G. F. Fitzgerald and D. van Sinderen: From bacterial genome to functionality; case bifidobacteria. International Journal of Food Microbiology 120, 2-12 (2007) (Pubitemid 350051483)
10. J. Yuan, L. Zhu, X. Liu, T. Li, Y. Zhang, T. Ying, B. Wang, J. Wang, H. Dong, E. Feng, Q. Li, J. Wang, H. Wang, K. Wei, X. Zhang, C. Huang, P. Huang, L. Huang, M. Zeng and H. Wang: A proteome reference map and proteomic analysis of Bifidobacterium longum NCC2705. Molecular & Cellular Proteomics 5, 1105-1118 (2006) (Pubitemid 43985934)
11. S. P. Gygi, B. Rist, S. A. Gerber, F. Turecek, M. H. Gelb and R. Aebersold: Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nature Biotechnology 17, 994-999 (1999) (Pubitemid 29474856)
12. B. Sanchez, M. C. Champomier-Vergès, P. Anglade, F. Baraige, C. G. de los Reyes-Gavilan, A. Margolles and M. Zagorec: Proteomic analysis of global changes in protein expression during bile salt exposure of Bifidobacterium longum NCIMB 8809. Journal of Bacteriology 187, 5799-5808 (2005) (Pubitemid 41134318)
13. B. Sanchez, M. C. Champomier-Vergès, M. C. Collado, P. Anglade, F. Baraige, Y. Sanz, C. G. de los Reyes-Gavilan, A. Margolles and M. Zagorec: Low pH adaptation and the acid tolerance response of Bifidobacterium longum biotype longum. Applied and Environmental Microbiology 73, 6450-6459 (2007) (Pubitemid 47623703)
14. B. Vitali, S. Turroni, P. F. Dal, M. Candela, V. Wasinger and P. Brigidi: Genetic and proteomic characterization of rifaximin resistance in Bifidobacterium infantis BI07. Research in Microbiology 158, 355-362 (2007) (Pubitemid 46810201)
15. C. Garrigues, B. Stuer-Lauridsen and E. Johansen: Characterisation of Bifidobacterium animalis subsp. Lactis BB-12 and other probiotic bacteria using genomics, transcriptomics and proteomics. Australian Journal of Dairy Technology 60, 84-92 (2005) (Pubitemid 41328079)
16. B. Sanchez, M. C. Champomier-Vergès, B. Stuer-Lauridsen, P. Ruas-Madiedo, P. Anglade, F. Baraige, C. G. de los Reyes-Gavilan, E. Johansen, M. Zagorec and A. Margolles: Adaptation and response of Bifidobacterium animalis subsp. lactis to bile: a proteomic and physiological approach. Applied and Environmental Microbiology 73, 6757-6767 (2007) (Pubitemid 350076794)
17. B. Vitali, V. Wasinger, P. Brigidi and M. Guilhaus: A proteomic view of Bifidobacterium infantis generated by multi-dimensional chromatography coupled with tandem mass spectrometry. Proteomics 5, 1859-1867 (2005) (Pubitemid 40686231)
18. B. Sanchez, M. C. Champomier-Vergès, P. Anglade, F. Baraige, C. G. de los Reyes-Gavilan, A. Margolles and M. Zagorec: A preliminary analysis of Bifidobacterium longum exported proteins by two-dimensional electrophoresis. Journal of Molecular Microbiology and Biotechnology 14, 74-79 (2008) (Pubitemid 350022335)
19. M. Candela, S. Bergmann, M. Vici, B. Vitali, S. Turroni, B. J. Eikmanns, S. Hammerschmidt and P. Brigidi: Binding of human plasminogen to Bifidobacterium. Journal of Bacteriology 189, 5929-5936 (2007) (Pubitemid 47236145)
20. M. Unlu, M. E. Morgan and J. S. Minden: Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18, 2071-2077 (1997) (Pubitemid 27501267)
21. G. N. Vemuri and A. A. Aristidou: Metabolic engineering in the -omics era: elucidating and modulating regulatory networks. Microbiology and Molecular Biology Reviews 69, 197-216 (2005) (Pubitemid 40847938)
22. U. Volker and M. Hecker: From genomics via proteomics to cellular physiology of the Gram-positive model organism Bacillus subtilis. Cellular Microbiology 7, 1077-1085 (2005) (Pubitemid 41030934)
23. L. DeSouza, G. Diehl, M. J. Rodrigues, J. Guo, A. D. Romaschin, T. J. Colgan and K. W. Siu: Search for cancer markers from endometrial tissues using differentially labeled tags iTRAQ and cICAT with multidimensional liquid chromatography and tandem mass spectrometry. Journal of Proteome Research 4, 377-386 (2005) (Pubitemid 40548142)
24. P. L. Ross, Y. N. Huang, J. N. Marchese, B. Williamson, K. Parker, S. Hattan, N. Khainovski, S. Pillai, S. Dey, S. Daniels, S. Purkayastha, P. Juhasz, S. Martin, M. Bartlet-Jones, F. He, A. Jacobson and D. J. Pappin: Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Molecular & Cellular Proteomics 3, 1154-1169 (2004)
25. L. H. Choe, K. Aggarwal, Z. Franck and K. H. Lee: A comparison of the consistency of proteome quantitation using two-dimensional electrophoresis and shotgun isobaric tagging in Escherichia coli cells. Electrophoresis 26, 2437-2449 (2005) (Pubitemid 40932751)
26. M. P. Molloy, S. Donohoe, E. E. Brzezinski, G. W. Kilby, T. I. Stevenson, J. D. Baker, D. R. Goodlett and D. A. Gage: Large-scale evaluation of quantitative reproducibility and proteome coverage using acid cleavable isotope coded affinity tag mass spectrometry for proteomic profiling. Proteomics 5, 1204-1208 (2005)
27. Y. Coute, C. Hernandez, R. D. Appel, J. C. Sanchez and A. Margolles: Isotope labeling of Bifidobacterium longum cells with 13C-substituted leucine for quantitative proteomics. Applied and Environmental icrobiology 73, 5653-5656 (2007) (Pubitemid 47378774)
28. S. Das, J. C. Sierra, K. V. Soman, G. Suarez, A. A. Mohammad, T. A. Dang, B. A. Luxon and V. E. Reyes: Differential protein expression profiles of gastric epithelial cells following Helicobacter pylori infection using ProteinChips. Journal of Proteome Research 4, 920-930 (2005) (Pubitemid 40863281)
29. E. Tuomola, R. Crittenden, M. Playne, E. Isolauri and S. Salminen: Quality assurance criteria for probiotic bacteria. American Journal of Clinical Nutrition 73, 393S-398S (2001) (Pubitemid 32113261)
30. H. S. Chung, Y. B. Kim, S. L. Chun and G. E. Ji: Screening and selection of acid and bile resistant bifidobacteria. International Journal of Food Microbiology 47, 25-32 (1999) (Pubitemid 29225296)
31. M. C. Collado and Y. Sanz: Method for direct selection of potentially probiotic Bifidobacterium strains from human feces based on their acid-adaptation ability. Journal of Microbiological Methods 66, 560-563 (2007) (Pubitemid 44081814)
32. M. Matsumoto, H. Ohishi and Y. Benno: H+-ATPase activity in Bifidobacterium with special reference to acid tolerance. International Journal of Food Microbiology 93, 109-113 (2004) (Pubitemid 38591630)
33. N. Takahashi, J. Z. Xiao, K. Miyaji, T. Yaeshiima, A. Hiramatsu, K. Iwatsuki, S. Kokubo and A. Hosono: Selection of acid tolerant bifidobacteria and evidence for a low-pH-inducible acid tolerance response in Bifidobacterium longum. Journal of Dairy Research 71, 340-345 (2004) (Pubitemid 39059433)
34. M. Ventura, C. Canchaya, D. van Sinderen, G. F. Fitzgerald and R. Zink: Bifidobacterium lactis DSM 10140: Identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny. Applied and Environmental Microbiology 0, 3110-3121 (2004) (Pubitemid 38657831)
35. P. D. Cotter and C. Hill: Surviving the acid test: responses of gram-positive bacteria to low pH. Microbiology and Molecular Biology Reviews 67, 429-453 (2003) (Pubitemid 37122528)
36. B. Sanchez, C. G. de los Reyes-Gavilan and A. Margolles: The F1F0-ATPase of Bifidobacterium animalis is involved in bile tolerance. Environmental Microbiology 8, 1825-1833 (2006) (Pubitemid 44326474)
37. A. C. Len, D. W. Harty and N. A. Jacques: Proteome analysis of Streptococcus mutans metabolic phenotype during acid tolerance. Microbiology 150, 1353-1366 (2004) (Pubitemid 38744737)
38. M. Begley, C. Hill and C. G. Gahan: Bile salt hydrolase activity in probiotics. Applied and Environmental Microbiology 72, 1729-1738 (2006)
39. G. Jan, P. Leverrier, V. Pichereau and P. Boyaval: Changes in protein synthesis and morphology during acid adaptation of Propionibacterium freudenreichii. Applied and Environmental Microbiology 67, 2029-2036 2001) (Pubitemid 33641382)
40. L. Noriega, M. Gueimonde, B. Sanchez, A. Margolles and C. G. de los Reyes-Gavilan: Effect of the adaptation to high bile salts concentrations on glycosidic activity, survival at low PH and cross-resistance to bile salts in Bifidobacterium. International Journal of Food Microbiology 94, 79-86 (2004) (Pubitemid 38681189)
41. J. P. Grill, S. Perrin and F. Schneider: Bile salt toxicity to some bifidobacteria strains: role of conjugated bile salt hydrolase and pH. Canadian Journal of Microbiology 46, 878-884 (2000)
42. L. F. Marvin-Guy, S. Parche, S. Wagniere, J. Moulin, R. Zink, M. Kussmann and L. B. Fay: Rapid identification of stress-related fingerprint from whole bacterial cells of Bifidobacterium lactis using matrix assisted laser desorption/ionization mass spectrometry. Journal of The American Society for Mass Spectrometry 15, 1222-1227 (2004) (Pubitemid 38970066)
43. K. Savijoki, A. Suokko, A. Palva, L. Valmu, N. Kalkkinen and P. Varmanen: Effect of heat-shock and bile salts on protein synthesis of Bifidobacterium longum revealed by (35S)methionine labelling and twodimensional gel electrophoresis. FEMS Microbiology Letters 248, 207-215 (2005) (Pubitemid 40942130)
44. P. Ruas-Madiedo, A. Hernandez-Barranco, A. Margolles and C. G. de los Reyes-Gavilan: A bile saltresistant derivative of Bifidobacterium animalis has an altered fermentation pattern when grown on glucose and maltose. Applied and Environmental Microbiology 71, 6564-6570 (2005) (Pubitemid 43194137)
45. M. Begley, C. G. Gahan and C. Hill: The interaction between bacteria and bile. FEMS Microbiology Reviews 29, 625-651 (2005) (Pubitemid 41139175)
46. C. M. Payne, C. Crowley, D. Washo-Stultz, M. Briehl, H. Bernstein, C. Bernstein, S. Beard, H. Holubec and J. Warneke: The stress-response proteins poly (ADP-ribose) polymerase and NF-kappaB protect against bile saltinduced apoptosis. Cell Death & Differentiation 5, 623-636 (1998) (Pubitemid 28356584)
47. H. Bernstein, C. M. Payne, C. Bernstein, J. Schneider, S. E. Beard and C. L. Crowley: Activation of the promoters of genes associated with DNA damage, oxidative stress, ER stress and protein malfolding by the bile salt, eoxycholate. Toxicology Letters 108, 37-46 (1999) (Pubitemid 29333108)
48. P. A. Bron, M. Marco, S. M. Hoffer, E. van Mullekom, W. M. De Vos and M. Kleerebezem: Genetic characterization of the bile salt response in Lactobacillus plantarum and analysis of responsive promoters in vitro and in situ in the gastrointestinal tract. Journal of Bacteriology 186, 7829-7835 (2004) (Pubitemid 39552492)
49. K. Vido, H. Diemer, A. van Dorsselaer, E. Leize, V. Juillard, A. Gruss and P. Gaudu: Roles of thioredoxin reductase during the aerobic life of Lactococcus lactis. Journal of Bacteriology 187, 601-610 (2005) (Pubitemid 40096247)
50. H. H. Kampinga: Chaperones in preventing protein denaturation in living cells and protecting against cellular stress. Handbook of Experimental Pharmacology 172, 1-42 (2006)
51. G. Schmidt and R. Zink: Basic features of the stress response in three species of bifidobacteria: B. longum, B. adolescentis, and B. breve. International Journal of Food Microbiology 55, 41-45 (2000) (Pubitemid 30160802)
52. M. Ventura, C. Canchaya, R. Zink, G. F. Fitzgerald and D. van Sinderen: Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: Genetic, transcriptional, and phylogenetic analyses. Applied and Environmental Microbiology 70, 6197-6209 (2004) (Pubitemid 39471870)
53. M. Ventura, J. G. Kenny, Z. D. Zhang, G. F. Fitzgerald and D. van Sinderen: The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction. Microbiology-SGM 151, 2861-2872 (2005) (Pubitemid 41309561)
54. M. Ventura, R. Zink, G. F. Fitzgerald and D. van Sinderen: Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing. Applied and Environmental Microbiology 71, 487-500 (2005) (Pubitemid 40116305)
55. L. Ruiz, B. Sanchez, P. Ruas-Madiedo, C. G. de los Reyes-Gavilan and A. Margolles: Cell envelope changes in Bifidobacterium animalis subsp. lactis as a response to bile. FEMS Microbiology Letters 274, 316-322 (2007) (Pubitemid 47256275)
56. A. Margolles, L. Garcia, B. Sanchez, M. Gueimonde and C. G. de los Reyes-Gavilan: Characterisation of a Bifidobacterium strain with acquired resistance to cholate-a preliminary study. International Journal of Food Microbiology 82, 191-198 (2003) (Pubitemid 36144023)
57. L. Noriega, I. Cuevas, A. Margolles and C. G. de los Reyes-Gavilan: Deconjugation and bile salts hydrolase activity by Bifidobacterium strains with acquired resistance to bile. International Dairy Journal 16, 850-855 (2006)
58. S. G. Lundeen and D. C. Savage: Multiple forms of bile salt hydrolase from Lactobacillus sp. strain 100-100. Journal of Bacteriology 174, 7217-7220 (1992)
59. S. T. Motley, B. J. Morrow, X. Liu, I. L. Dodge, A. Vitiello, C. K. Ward and K. J. Shaw: Simultaneous analysis of host and pathogen interactions during an in vivo infection reveals local induction of host acute phase response proteins, a novel bacterial stress response, and evidence of a host-imposed metal ion limited environment. Cellular Microbiology 6, 849-865 (2004) (Pubitemid 39162627)
60. J. L. Sonnenburg, C. T. Chen and J. I. Gordon: Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biology 4, e413 (2006)
61. S. M. Twine, N. C. Mykytczuk, M. D. Petit, H. Shen, A. Sjostedt, C. J. Wayne and J. F. Kelly: In vivo proteomic analysis of the intracellular bacterial pathogen, Francisella tularensis, isolated from mouse spleen. Biochemical and Biophysical Research Communications 345, 1621-1633 (2006) (Pubitemid 43817916)
62. J. Yuan, B. Wang, Z. Sun, X. Bo, X. Yuan, X. He, H. Zhao, X. Du, F. Wang, Z. Jiang, L. Zhang, L. Jia, Y. Wang, K. Wei, J. Wang, X. Zhang, Y. Sun, L. Huang and M. Zeng: Analysis of host-inducing proteome changes in Bifidobacterium longum NCC2705 grown in vivo. Journal of Proteome Research 7, 375-385 (2008) (Pubitemid 351171152)
63. P. J. Simpson, C. Stanton, G. F. Fitzgerald and R. P. Ross: Intrinsic tolerance of Bifidobacterium species to heat and oxygen and survival following spray drying and storage. Journal of Applied Microbiology 99, 493-501 (2005) (Pubitemid 41215826)
64. H. K. Park, J. S. So and T. R. Heo: Acid adaptation promotes survival of Bifidobacterium breve against environmental stresses. Foods and Biotechnology 4, 226-230 (1995)
65. L. Noriega, C. G. de los Reyes-Gavilan and A. Margolles: Acquisition of bile salt resistance promotes antibiotic susceptibility changes in Bifidobacterium. Journal of Food Protection 68, 1916-1919 (2005) (Pubitemid 41446126)
66. M. Saarela, M. Rantala, K. Hallamaa, L. Nohynek, I. Virkajarvi and J. Matto: Stationary-phase acid and heat treatments for improvement of the viability of probiotic lactobacilli and bifidobacteria. Journal of Applied Microbiology 96, 1205-1214 (2004) (Pubitemid 38703599)
67. P. Kurdi, H. Tanaka, H. W. van Veen, K. Asano, F. Tomita and A. Yokota: Cholic acid accumulation and its diminution by short-chain fatty acids in bifidobacteria. Microbiology-SGM 149, 2031-2037 (2003) (Pubitemid 37038409)
68. V. Rivera-Amill, B. J. Kim, J. Seshu and M. E. Konkel: Secretion of the virulence-associated Campylobacter invasion antigens from Campylobacter jejuni requires a stimulatory signal. Journal of Infectious Diseases 183, 1607-1616 (2001) (Pubitemid 32466698)
69. E. R. Hondorp and R. G. Matthews: Oxidative stress inactivates cobalamin-independent methionine synthase (MetE) in Escherichia coli. PLoS Biology 2, e336 (2004)
70. S. Parche, J. Amon, I. Jankovic, E. Rezzonico, M. Beleut, H. Barutcu, I. Schendel, M. P. Eddy, A. Burkovski, F. Arigoni and F. Titgemeyer: Sugar transport systems of Bifidobacterium longum NCC2705. Journal of olecular Microbiology and Biotechnology 12, 9-19 (2007) (Pubitemid 46011121)
71. T. He, H. Roelofsen, G. Alvarez-Llamas, M. de Vries, K. Venema, G. W. Welling and R. J. Vonk: Differential analysis of protein expression of ifidobacterium grown on different carbohydrates. Journal of icrobiological Methods 69, 364-370 (2007) (Pubitemid 46551310)
72. S. Parche, M. Beleut, E. Rezzonico, D. Jacobs, F. Arigoni, F. Titgemeyer and I. Jankovic: Lactose-overglucose preference in Bifidobacterium longum NCC2705: glcP, encoding a glucose transporter, is subject to lactose repression. Journal of Bacteriology 188, 1260-1265 (2006) (Pubitemid 43228658)
73. P. Mattarelli, B. Biavati, F. Crociani, V. Scardovi and G. Prati: Bifidobacterial cell wall proteins (BIFOP) in Bifidobacterium globosum. Research in Microbiology 144, 581-590 (1993)
74. M. Ventura, C. Canchaya, Z. Zhang, V. Bernini, G. F. Fitzgerald and D. van Sinderen: How high G+C Grampositive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators. FEMS Microbiology Reviews 30, 734-759 (2006) (Pubitemid 44199348)
75. M. Ventura, Z. D. Zhang, M. Cronin, C. Canchaya, J. G. Kenny, G. F. Fitzgerald and D. van Sinderen: The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003. Journal of acteriology 187, 8411-8426 (2005) (Pubitemid 41780506)
76. M. Ventura, G. F. Fitzgerald and D. van Sinderen: Genetic and transcriptional organization of the clpC locus in Bifidobacterium breve UCC 2003. Applied and Environmental Microbiology 71, 6282-6291 (2005) (Pubitemid 41456930)
77. M. Ventura, C. Canchaya, V. Bernini, A. Del Casale, F. Dellaglio, E. Neviani, G. F. Fitzgerald and D. van Sinderen: Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus. Applied and nvironmental Microbiology 71, 8998-9007 (2005) (Pubitemid 41804049)
78. M. Ventura, C. Canchaya, Z. Zhang, G. F. Fitzgerald and D. van Sinderen: Molecular characterization of hsp20, encoding a small heat shock protein of Bifidobacterium breve UCC2003. Applied and Environmental Microbiology 73, 4695-4703 (2007) (Pubitemid 47122618)
79. E. Rezzonico, S. Lariani, C. Barretto, G. Cuanoud, G. Giliberti, M. Delley, F. Arigoni and G. Pessi: Global transcriptome analysis of the heat shock response of Bifidobacterium longum. FEMS Microbiology Letters 271, 136-145 (2007) (Pubitemid 46701065)
80. R. Rosen, D. Becher, K. Buttner, D. Biran, M. Hecker and E. Z. Ron: Highly phosphorylated bacterial proteins. Proteomics 4, 3068-3077 (2004) (Pubitemid 39372389)
81. D. Becker, M. Selbach, C. Rollenhagen, M. Ballmaier, T. F. Meyer, M. Mann and D. Bumann: Robust Salmonella metabolism limits possibilities for new antimicrobials. Nature 440, 303-307 (2006)
82. L. F. Fehri, P. Sirand-Pugnet, G. Gourgues, G. Jan, H. Wroblewski and A. Blanchard: Resistance to antimicrobial peptides and stress response in Mycoplasma pulmonis. Antimicrobial Agents and Chemotherapy 49, 4154-4165 (2005) (Pubitemid 41400959)
83. A. Scherl, P. Francois, Y. Charbonnier, J. M. Deshusses, T. Koessler, A. Huyghe, M. Bento, J. Stahl-Zeng, A. Fischer, A. Masselot, A. Vaezzadeh, F. Galle, A. Renzoni, P. Vaudaux, D. Lew, C. G. Zimmermann-Ivol, P. A. Binz, J. C. Sanchez, D. F. Hochstrasser and J. Schrenzel: Exploring glycopeptide-resistance in Staphylococcus aureus: a combined proteomics and transcriptomics approach for the identification of resistance-related markers. BMC Genomics 7, 296 (2006)
84. C. Xu, X. Lin, H. Ren, Y. Zhang, S. Wang and X. Peng: Analysis of outer membrane proteome of Escherichia coli related to resistance to ampicillin and tetracycline. Proteomics 6, 462-473 (2006) (Pubitemid 43208026)
85. A. B. Flórez, M. S. Ammor, P. Álvarez-Martin, A. Margolles and B. Mayo: Molecular analysis of tet (W) gene-mediated tetracycline resistance in dominant intestinal Bifidobacterium species from healthy humans. Applied and Environmental Microbiology 72, 7377-7379 (2006) (Pubitemid 44748459)
86. P. Brigidi, E. Swennen, F. Rizzello, M. Bozzolasco and D. Matteuzzi: Effects of rifaximin administration on the intestinal microbiota in patients with ulcerative colitis. Journal of Chemotherapy 14, 290-295 (2002) (Pubitemid 34734574)
87. M. Gueimonde, K. Laitinen, S. Salminen and E. Isolauri: Breast milk: A source of bifidobacteria for infant gut development and maturation? Neonatology 92, 64-66 (2007) (Pubitemid 47013399)
88. G. Schroder and E. Lanka: TraG-like proteins of type IV secretion systems: functional dissection of the multiple activities of TraG (RP4) and TrwB (R388). Journal of Bacteriology 185, 4371-4381 (2003) (Pubitemid 36890483)
89. S. Pilgrim, A. Kolb-Maurer, I. Gentschev, W. Goebel and M. Kuhn: Deletion of the gene encoding p60 in Listeria monocytogenes leads to abnormal cell division and loss of actin-based motility. Infection and Immunity 71, 3473-3484 (2003) (Pubitemid 36637576)
90. A. E. Speers and C. C. Wu: Proteomics of integral membrane proteins-theory and application. Chemical Reviews 107, 3687-3714 (2007) (Pubitemid 47322748)
91. K. Hiller, A. Grote, M. Maneck, R. Munch and D. Jahn: JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins. Bioinformatics 22, 2441-2443 (2006) (Pubitemid 44566975)
92. R. L. Tatusov, E. V. Koonin and D. J. Lipman: A genomic perspective on protein families. Science 278, 631-637 (1997) (Pubitemid 27464953)
93. C. E. Price, S. J. Reid, A. J. Driessen and V. R. Abratt: The Bifidobacterium longum NCIMB 702259T ctr gene codes for a novel cholate transporter. Applied and Environmental Microbiology 72, 923-926 (2006)