-
1
-
-
84987728127
-
Polyploidy in fungi: Evolution after whole-genome duplication
-
Albertin W, Marullo P: Polyploidy in fungi: evolution after whole-genome duplication. Proc Biol Sci 279: 2497-2509 (2012).
-
(2012)
Proc Biol Sci
, vol.279
, pp. 2497-2509
-
-
Albertin, W.1
Marullo, P.2
-
2
-
-
80053359585
-
The genome of the green anole lizard and a comparative analysis with birds and mammals
-
Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, et al: The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 477: 587-591 (2011).
-
(2011)
Nature
, vol.477
, pp. 587-591
-
-
Alföldi, J.1
Di Palma, F.2
Grabherr, M.3
Williams, C.4
Kong, L.5
-
3
-
-
33745402414
-
A novel class of small RNAs bind to MILI protein in mouse testes
-
DOI 10.1038/nature04916, PII NATURE04916
-
Aravin AA, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, et al: A novel class of small RNAs bind to MILI protein in mouse testes. Nature 442: 203-207 (2006). (Pubitemid 44086567)
-
(2006)
Nature
, vol.442
, Issue.7099
, pp. 203-207
-
-
Aravin, A.1
Gaidatzis, D.2
Pfeffer, S.3
Lagos-Quintana, M.4
Landgraf, P.5
Iovino, N.6
Morris, P.7
Brownstein, M.J.8
Kuramochi-Miyagawa, S.9
Nakano, T.10
Chien, M.11
Russo, J.J.12
Ju, J.13
Sheridan, R.14
Sander, C.15
Zavolan, M.16
Tuschl, T.17
-
4
-
-
36749037521
-
The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
-
DOI 10.1126/science.1146484
-
Aravin AA, Hannon GJ, Brennecke J: The PiwipiRNA pathway provides an adaptive defense in the transposon arms race. Science 318: 761-764 (2007a). (Pubitemid 351411762)
-
(2007)
Science
, vol.318
, Issue.5851
, pp. 761-764
-
-
Aravin, A.A.1
Hannon, G.J.2
Brennecke, J.3
-
5
-
-
34248160438
-
Developmentally regulated piRNA clusters implicate MILI in transposon control
-
DOI 10.1126/science.1142612
-
Aravin AA, Sachidanandam R, Girard A, Fejes- Toth K, Hannon GJ: Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316: 744-747 (2007b). (Pubitemid 46717682)
-
(2007)
Science
, vol.316
, Issue.5825
, pp. 744-747
-
-
Aravin, A.A.1
Sachidanandam, R.2
Girard, A.3
Fejes-Toth, K.4
Hannon, G.J.5
-
6
-
-
34147148636
-
Distribution and phylogeny of Penelope -like elements in eukaryotes
-
Arkhipova IR: Distribution and phylogeny of Penelope -like elements in eukaryotes. Syst Biol 55: 875-885 (2006).
-
(2006)
Syst Biol
, vol.55
, pp. 875-885
-
-
Arkhipova, I.R.1
-
7
-
-
12344315160
-
Deleterious transposable elements and the extinction of asexuals
-
DOI 10.1002/bies.20159
-
Arkhipova I, Meselson M: Deleterious transposable elements and the extinction of asexuals. Bioessays 27: 76-85 (2005). (Pubitemid 40128625)
-
(2005)
BioEssays
, vol.27
, Issue.1
, pp. 76-85
-
-
Arkhipova, I.1
Meselson, M.2
-
8
-
-
70349633516
-
Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis
-
Armisen J, Gilchrist MJ, Wilczynska A, Standart N, Miska EA: Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis. Genome Res 19: 1766-1775 (2009).
-
(2009)
Genome Res
, vol.19
, pp. 1766-1775
-
-
Armisen, J.1
Gilchrist, M.J.2
Wilczynska, A.3
Standart, N.4
Miska, E.A.5
-
9
-
-
77957556792
-
Gene expression in a paleopolyploid: A transcriptome resource for the ciliate Paramecium tetraurelia
-
Arnaiz O, Goût JF, Bétermier M, Bouhouche K, Cohen J, et al: Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia. BMC Genomics 11: 547 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 547
-
-
Arnaiz, O.1
Goût, J.F.2
Bétermier, M.3
Bouhouche, K.4
Cohen, J.5
-
10
-
-
84863611417
-
PiRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans
-
Ashe A, Sapetschnig A, Weick EM, Mitchell J, Bagijn MP, et al: piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans. Cell 150: 88-99 (2012).
-
(2012)
Cell
, vol.150
, pp. 88-99
-
-
Ashe, A.1
Sapetschnig, A.2
Weick, E.M.3
Mitchell, J.4
Bagijn, M.P.5
-
11
-
-
33750858684
-
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
-
DOI 10.1038/nature05230, PII NATURE05230
-
Aury JM, Jaillon O, Duret L, Noel B, Jubin C, et al: Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 444: 171-178 (2006). (Pubitemid 44722053)
-
(2006)
Nature
, vol.444
, Issue.7116
, pp. 171-178
-
-
Aury, J.-M.1
Jaillon, O.2
Duret, L.3
Noel, B.4
Jubin, C.5
Porcel, B.M.6
Segurens, B.7
Daubin, V.8
Anthouard, V.9
Aiach, N.10
Arnaiz, O.11
Billaut, A.12
Beisson, J.13
Blanc, I.14
Bouhouche, K.15
Cmara, F.16
Duharcourt, S.17
Guigo, R.18
Gogendeau, D.19
Katinka, M.20
Keller, A.-M.21
Kissmehl, R.22
Klotz, C.23
Koll, F.24
Le Mouel, A.25
Lepere, G.26
Malinsky, S.27
Nowacki, M.28
Nowak, J.K.29
Plattner, H.30
Poulain, J.31
Ruiz, F.32
Serrano, V.33
Zagulski, M.34
Dessen, P.35
Betermier, M.36
Weissenbach, J.37
Scarpelli, C.38
Schachter, V.39
Sperling, L.40
Meyer, E.41
Cohen, J.42
Wincker, P.43
more..
-
13
-
-
84865192446
-
The fishes of genome 10K
-
Bernardi G, Wiley EO, Mansour H, Miller MR, Orti G, et al: The fishes of Genome 10K. Mar Genomics 7: 3-6 (2012).
-
(2012)
Mar Genomics
, vol.7
, pp. 3-6
-
-
Bernardi, G.1
Wiley, E.O.2
Mansour, H.3
Miller, M.R.4
Orti, G.5
-
14
-
-
77954564809
-
Probing the meiotic mechanism of intergenomic exchanges by genomic in situ hybridization on lampbrush chromosomes of unisexual Ambystoma (Amphibia: Caudata)
-
Bi K, Bogart JP: Probing the meiotic mechanism of intergenomic exchanges by genomic in situ hybridization on lampbrush chromosomes of unisexual Ambystoma (Amphibia: Caudata). Chromosome Res 18: 371-382 (2010).
-
(2010)
Chromosome Res
, vol.18
, pp. 371-382
-
-
Bi, K.1
Bogart, J.P.2
-
15
-
-
0020317050
-
The molecular basis of P-M hybrid dysgenesis: The role of the P element, a P-strain-specific transposon family
-
Bingham PM, Kidwell MG, Rubin GM: The molecular asis of P-M hybrid dysgenesis: the role of the P element, a P-strain-specific transposon family. Cell 29: 995-1004 (1982). (Pubitemid 12027921)
-
(1982)
Cell
, vol.29
, Issue.3
, pp. 995-1004
-
-
Bingham, P.M.1
Kidwell, M.G.2
Rubin, G.M.3
-
16
-
-
0029445204
-
Studies of DNA methylation in animals
-
Bird A, Tate P, Nan X, Campoy J, Meehan R, et al: Studies of DNA methylation in animals. J Cell Sci Suppl 19: 37-39 (1995).
-
(1995)
J Cell Sci Suppl
, vol.19
, pp. 37-39
-
-
Bird, A.1
Tate, P.2
Nan, X.3
Campoy, J.4
Meehan, R.5
-
17
-
-
0023662304
-
Mobilization of hobo elements residing within the decapentaplegic gene complex: Suggestion of a new hybrid dysgenesis system in Drosophila melanogaster
-
Blackman RK, Grimaila R, Koehler MM, Gelbart WM: Mobilization of hobo elements residing within the decapentaplegic gene complex: suggestion of a new hybrid dysgenesis system in Drosophila melanogaster. Cell 49: 497-505 (1987).
-
(1987)
Cell
, vol.49
, pp. 497-505
-
-
Blackman, R.K.1
Grimaila, R.2
Koehler, M.M.3
Gelbart, W.M.4
-
19
-
-
79960056273
-
Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling
-
Bouhouche K, Gout JF, Kapusta A, Bétermier M, Meyer E: Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling. Nucleic Acids Res 39: 4249-4264 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 4249-4264
-
-
Bouhouche, K.1
Gout, J.F.2
Kapusta, A.3
Bétermier, M.4
Meyer, E.5
-
20
-
-
33947273235
-
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
-
DOI 10.1016/j.cell.2007.01.043, PII S0092867407002577
-
Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, et al: Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103 (2007). (Pubitemid 46427877)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
Kellis, M.5
Sachidanandam, R.6
Hannon, G.J.7
-
21
-
-
57149104113
-
An epigenetic role for maternally inherited piRNAs in transposon silencing
-
DOI 10.1126/science.1165171
-
Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ: An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 322: 1387-1392 (2008). (Pubitemid 352775252)
-
(2008)
Science
, vol.322
, Issue.5906
, pp. 1387-1392
-
-
Brennecke, J.1
Malone, C.D.2
Aravin, A.A.3
Sachidanandam, R.4
Stark, A.5
Hannon, G.J.6
-
22
-
-
77957898047
-
Chromosomes, conflict, and epigenetics: Chromosomal speciation revisited
-
Brown JD, O'Neill RJ: Chromosomes, conflict, and epigenetics: chromosomal speciation revisited. Annu Rev Genomics Hum Genet 11: 291-316 (2010).
-
(2010)
Annu Rev Genomics Hum Genet
, vol.11
, pp. 291-316
-
-
Brown, J.D.1
O'neill, R.J.2
-
23
-
-
39149116679
-
Methylation perturbations in retroelements within the genome of a Mus interspecific hybrid correlate with double minute chromosome formation
-
Brown JD, Golden D, O'Neill RJ: Methylation perturbations in retroelements within the genome of a Mus interspecific hybrid correlate with double minute chromosome formation. Genomics 91: 267-273 (2008).
-
(2008)
Genomics
, vol.91
, pp. 267-273
-
-
Brown, J.D.1
Golden, D.2
O'neill, R.J.3
-
24
-
-
84860641447
-
Retroelement demethylation associated with abnormal placentation in Mus musculus × Mus caroli hybrids
-
Brown JD, Piccuillo V, O'Neill RJ: Retroelement demethylation associated with abnormal placentation in Mus musculus × Mus caroli hybrids. Biol Reprod 86: 88 (2012).
-
(2012)
Biol Reprod
, vol.86
, pp. 88
-
-
Brown, J.D.1
Piccuillo, V.2
O'neill, R.J.3
-
25
-
-
0021717849
-
The molecular basis of I-R hybrid dysgenesis in Drosophila melanogaster: Identification, cloning, and properties of the I factor
-
Bucheton A, Paro R, Sang HM, Pelisson A, Finnegan DJ: The molecular basis of I-R hybrid dysgenesis in Drosophila melanogaster : identification, cloning, and properties of the I factor. Cell 38: 153-163 (1984). (Pubitemid 15216543)
-
(1984)
Cell
, vol.38
, Issue.1
, pp. 153-163
-
-
Bucheton, A.1
Paro, R.2
Sang, H.M.3
-
26
-
-
0021988254
-
The expression of creatine kinase isozymes in Xenopus tropicalis, Xenopus laevis laevis, and their viable hybrid
-
DOI 10.1007/BF00499114
-
Burki E: The expression of creatine kinase isozymes in Xenopus tropicalis, Xenopus laevis laevis, and their viable hybrid. Biochem Ge net 23: 73-88 (1985). (Pubitemid 15089249)
-
(1985)
Biochemical Genetics
, vol.23
, Issue.1-2
, pp. 73-88
-
-
Burki, E.1
-
27
-
-
0344417087
-
Generation of a widespread Drosophila inversion by a transposable element
-
DOI 10.1126/science.285.5426.415
-
Cáceres M, Ranz JM, Barbadilla A, Long M, Ruiz A: Generation of a widespread Drosophila inversion by a transposable element. Science 285: 415-418 (1999). (Pubitemid 29343965)
-
(1999)
Science
, vol.285
, Issue.5426
, pp. 415-418
-
-
Caceres, M.1
Ranz, J.M.2
Barbadilla, A.3
Long, M.4
Ruiz, A.5
-
28
-
-
77953930032
-
Small RNAs, DNA methylation and transposable elements in wheats
-
Cantu D, Vanzetti LS, Sumner A, Dubcovsky M, Matvienko M, et al: Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics 11: 408 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 408
-
-
Cantu, D.1
Vanzetti, L.S.2
Sumner, A.3
Dubcovsky, M.4
Matvienko, M.5
-
29
-
-
67651214032
-
Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution
-
Carbone L, Harris RA, Vessere GM, Mootnick AR, Humphray S, et al: Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. PLoS Genet 5:e1000538 (2009).
-
(2009)
PLoS Genet
, vol.5
-
-
Carbone, L.1
Harris, R.A.2
Vessere, G.M.3
Mootnick, A.R.4
Humphray, S.5
-
30
-
-
84866405520
-
Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons
-
Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DIK, et al: Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biol Evol 4: 648-658 (2012).
-
(2012)
Genome Biol Evol
, vol.4
, pp. 648-658
-
-
Carbone, L.1
Harris, R.A.2
Mootnick, A.R.3
Milosavljevic, A.4
Martin, D.I.K.5
-
31
-
-
84855686649
-
Large-scale DNA editing of retrotransposons accelerates mammalian genome evolution
-
Carmi S, Church GM, Levanon EY: Large-scale DNA editing of retrotransposons accelerates mammalian genome evolution. Nat Commun 2: 519 (2011).
-
(2011)
Nat Commun
, vol.2
, pp. 519
-
-
Carmi, S.1
Church, G.M.2
Levanon, E.Y.3
-
32
-
-
18844453429
-
Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex
-
DOI 10.1534/genetics.104.035048
-
Casals F, Cáceres M, Manfrin MH, González J, Ruiz A: Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex.Genetics 169: 2047-2059 (2005). (Pubitemid 40695618)
-
(2005)
Genetics
, vol.169
, Issue.4
, pp. 2047-2059
-
-
Casals, F.1
Caceres, M.2
Manfrin, M.H.3
Gonzalez, J.4
Ruiz, A.5
-
33
-
-
79960892350
-
Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing
-
Castoe TA, Hall KT, Guibotsy Mboulas ML, Gu W, de Koning AP, et al: Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing. Genome Biol Evol 3: 641-653 (2011).
-
(2011)
Genome Biol Evol
, vol.3
, pp. 641-653
-
-
Castoe, T.A.1
Hall, K.T.2
Guibotsy Mboulas, M.L.3
Gu, W.4
De Koning, A.P.5
-
34
-
-
54449086787
-
PiRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline
-
Chambeyron S, Popkova A, Payen-Groschene G, Brun C, Laouini D, et al: piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline. Proc Natl Acad Sci USA 105: 14964-14969 (2008).
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 14964-14969
-
-
Chambeyron, S.1
Popkova, A.2
Payen-Groschene, G.3
Brun, C.4
Laouini, D.5
-
35
-
-
0028108183
-
The evolutionary dynamics of repetitive DNA in eukaryotes
-
DOI 10.1038/371215a0
-
Charlesworth B, Sniegowski P, Stephan W: The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371: 215-220 (1994). (Pubitemid 24293018)
-
(1994)
Nature
, vol.371
, Issue.6494
, pp. 215-220
-
-
Charlesworth, B.1
Sniegowski, P.2
Stephan, W.3
-
36
-
-
33947641533
-
Cutoff and aubergine Mutations Result in Retrotransposon Upregulation and Checkpoint Activation in Drosophila
-
DOI 10.1016/j.cub.2007.02.027, PII S0960982207010044
-
Chen Y, Pane A, Schupbach T: Cutoff and Aubergine mutations result in retrotransposon upregulation and checkpoint activation in Drosophila. Curr Biol 17: 637-642 (2007). (Pubitemid 46497794)
-
(2007)
Current Biology
, vol.17
, Issue.7
, pp. 637-642
-
-
Chen, Y.1
Pane, A.2
Schupbach, T.3
-
37
-
-
42649120310
-
The APOBEC3 cytidine deaminases: An innate defensive network opposing exogenous retroviruses and endogenous retroelements
-
DOI 10.1146/annurev.immunol.26.021607.090350
-
Chiu YL, Greene WC: The APOBEC3 cytidine deaminases: an innate defensive network opposing exogenous retroviruses and endogenous retroelements. Annu Rev Immunol 26: 317-353 (2008). (Pubitemid 351600379)
-
(2008)
Annual Review of Immunology
, vol.26
, pp. 317-353
-
-
Chiu, Y.-L.1
Greene, W.C.2
-
38
-
-
79551632781
-
The ecoresponsive genome of Daphnia pulex
-
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, et al: The ecoresponsive genome of Daphnia pulex. Science 331: 555-561 (2011).
-
(2011)
Science
, vol.331
, pp. 555-561
-
-
Colbourne, J.K.1
Pfrender, M.E.2
Gilbert, D.3
Thomas, W.K.4
Tucker, A.5
-
39
-
-
0032443562
-
A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal
-
Cox DN, Chao A, Baker J, Chang L, Qiao D, Lin H: A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal. Genes Dev 12: 3715-3727 (1998). (Pubitemid 29019652)
-
(1998)
Genes and Development
, vol.12
, Issue.23
, pp. 3715-3727
-
-
Cox, D.N.1
Chao, A.2
Baker, J.3
Chang, L.4
Qiao, D.5
Lin, H.6
-
41
-
-
44349104241
-
An endogenous small interfering RNA pathway in Drosophila
-
DOI 10.1038/nature07007, PII NATURE07007
-
Czech B, Malone CD, Zhou R, Stark A, Schlingeheyde C, et al: An endogenous small interfering RNA pathway in Drosophila. Nature 453: 798-802 (2008). (Pubitemid 351793787)
-
(2008)
Nature
, vol.453
, Issue.7196
, pp. 798-802
-
-
Czech, B.1
Malone, C.D.2
Zhou, R.3
Stark, A.4
Schlingeheyde, C.5
Dus, M.6
Perrimon, N.7
Kellis, M.8
Wohlschlegel, J.A.9
Sachidanandam, R.10
Hannon, G.J.11
Brennecke, J.12
-
42
-
-
46149092009
-
Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline
-
Das PP, Bagijn MP, Goldstein LD, Woolford JR, Lehrbach NJ, et al: Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline. Mol Cell 31: 79-90 (2008).
-
(2008)
Mol Cell
, vol.31
, pp. 79-90
-
-
Das, P.P.1
Bagijn, M.P.2
Goldstein, L.D.3
Woolford, J.R.4
Lehrbach, N.J.5
-
43
-
-
77958150590
-
Sequencing the genome of the Atlantic salmon (Salmo salar)
-
Davidson WS, Koop BF, Jones SJ, Iturra P, Vidal R, et al: Sequencing the genome of the Atlantic salmon (Salmo salar). Genome Biol 11: 403 (2010).
-
(2010)
Genome Biol
, vol.11
, pp. 403
-
-
Davidson, W.S.1
Koop, B.F.2
Jones, S.J.3
Iturra, P.4
Vidal, R.5
-
44
-
-
38149117037
-
Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
-
de Boer JG, Yazawa R, Davidson WS, Koop BF: Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids. BMC Genomics 8: 422 (2007).
-
(2007)
BMC Genomics
, vol.8
, pp. 422
-
-
De Boer, J.G.1
Yazawa, R.2
Davidson, W.S.3
Koop, B.F.4
-
45
-
-
70849114093
-
The transposonGalileo generates natural chromosomal inversions in Drosophila by ectopic recombination
-
Delprat A, Negre B, Puig M, Ruiz A: The transposon Galileo generates natural chromosomal inversions in Drosophila by ectopic recombination. PLoS One 4:e7883 (2009).
-
(2009)
PLoS One
, vol.4
-
-
Delprat, A.1
Negre, B.2
Puig, M.3
Ruiz, A.4
-
46
-
-
0037786824
-
COM, a heterochromatic locus governing the control of independent endogenous retroviruses from Drosophila melanogaster
-
Desset S, Meignin C, Dastugue B, Vaury C: COM, a heterochromatic locus governing the control of independent endogenous retroviruses from Drosophila melanogaster. Genetics 164: 501-509 (2003). (Pubitemid 36773487)
-
(2003)
Genetics
, vol.164
, Issue.2
, pp. 501-509
-
-
Desset, S.1
Meignin, C.2
Dastugue, B.3
Vaury, C.4
-
47
-
-
85158069207
-
Origin and evolution of retrotransposons
-
Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) (ASM Press, Washington)
-
Eickbush TH, Malik HS: Origin and evolution of retrotransposons, in Craig NL, Craigie R, Gellert M, Lambowitz AM (eds): Mobile DNA II, pp 1111-1144 (ASM Press, Washington 2002).
-
(2002)
Mobile DNA
, vol.2
, pp. 1111-1144
-
-
Eickbush, T.H.1
Malik, H.S.2
-
48
-
-
42549159450
-
Genome evolution and speciation genetics of clawed frogs (Xenopus and Silurana)
-
DOI 10.2741/3033
-
Evans BJ: Genome evolution and speciation genetics of clawed frogs (Xenopus and Silurana). Front Biosci 13: 4687-4706 (2008). (Pubitemid 351589192)
-
(2008)
Frontiers in Bioscience
, vol.13
, Issue.12
, pp. 4687-4706
-
-
Evans, B.J.1
-
49
-
-
23844456247
-
Penelope-like elements - A new class of retroelements: Distribution, function and possible evolutionary significance
-
DOI 10.1159/000084984
-
Evgen'ev MB, Arkhipova IR: Penelope -like elements - a new class of retroelements: distribution, function, and possible evolutionary significance. Cytogenet Genome Res 110: 510-521 (2005). (Pubitemid 41159928)
-
(2005)
Cytogenetic and Genome Research
, vol.110
, Issue.1-4
, pp. 510-521
-
-
Evgen'ev, M.B.1
Arkhipova, I.R.2
-
50
-
-
0031021619
-
Penelope, a new family of transposable elements and its possible role in hybrid dysgenesis in Drosophila virilis
-
DOI 10.1073/pnas.94.1.196
-
Evgen'ev MB, Zelentsova H, Shostak N, Kozitsina M, Barskyi V, et al: Penelope, a new family of transposable elements and its possible role in hybrid dysgenesis in Drosophila virilis. Proc Natl Acad Sci USA 94: 196-201 (1997). (Pubitemid 27027186)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.1
, pp. 196-201
-
-
Evgen'ev, M.B.1
Zelentsova, H.2
Shostak, N.3
Kozitsina, M.4
Barskyi, V.5
Lankenau, D.-H.6
Corces, V.G.7
-
51
-
-
0034633773
-
Mobile elements and chromosomal evolution in the virilis group of Drosophila
-
Evgen'ev MB, Zelentsova H, Poluectova H, Lyozin GT, Veleikodvorskaja V, et al: Mobile elements and chromosomal evolution in the virilis group of Drosophila. Proc Natl Acad Sci USA 97: 11337-11342 (2000).
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11337-11342
-
-
Evgen'ev, M.B.1
Zelentsova, H.2
Poluectova, H.3
Lyozin, G.T.4
Veleikodvorskaja, V.5
-
52
-
-
84870860974
-
Piwi-interacting RNAs protect DNA against loss during oxytricha genome rearrangement
-
Fang W, Wang X, Bracht JR, Nowacki M, Landweber LF: Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement. Cell 151: 1243-1255 (2012).
-
(2012)
Cell
, vol.151
, pp. 1243-1255
-
-
Fang, W.1
Wang, X.2
Bracht, J.R.3
Nowacki, M.4
Landweber, L.F.5
-
53
-
-
84857995398
-
Characterization of small RNAs in Xenopus tropicalis gastrulae
-
Faunes F, Almonacid LI, Melo F, Larrain J: Characterization of small RNAs in Xenopus tropicalis gastrulae. Genesis 50: 572-583 (2012).
-
(2012)
Genesis
, vol.50
, pp. 572-583
-
-
Faunes, F.1
Almonacid, L.I.2
Melo, F.3
Larrain, J.4
-
54
-
-
84868534630
-
Transposable elements, epigenetics, and genome evolution
-
Fedoroff NV: Transposable elements, epigenetics, and genome evolution. Science 338: 758-767 (2012).
-
(2012)
Science
, vol.338
, pp. 758-767
-
-
Fedoroff, N.V.1
-
55
-
-
84869028379
-
Genome evolution due to allopolyploidization in wheat
-
Feldman M, Levy AA: Genome evolution due to allopolyploidization in wheat. Genetics 192: 763-774 (2012).
-
(2012)
Genetics
, vol.192
, pp. 763-774
-
-
Feldman, M.1
Levy, A.A.2
-
56
-
-
79955394357
-
Recent amplification of the kangaroo endogenous retrovirus, KERV, limited to the centromere
-
Ferreri GC, Brown JD, Obergfell C, Jue N, Finn CE, et al: Recent amplification of the kangaroo endogenous retrovirus, KERV, limited to the centromere. J Virol 85: 4761-4771 (2011).
-
(2011)
J Virol
, vol.85
, pp. 4761-4771
-
-
Ferreri, G.C.1
Brown, J.D.2
Obergfell, C.3
Jue, N.4
Finn, C.E.5
-
57
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham EJ: DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41: 331-368 (2007).
-
(2007)
Annu Rev Genet
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
58
-
-
84882826169
-
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
-
in press
-
Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, et al: Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature, in press (2013).
-
(2013)
Nature
-
-
Flot, J.F.1
Hespeels, B.2
Li, X.3
Noel, B.4
Arkhipova, I.5
-
59
-
-
23844468088
-
Hybrid genome evolution by transposition
-
DOI 10.1159/000084937
-
Fontdevila A: Hybrid genome evolution by transposition. Cytogenet Genome Res 110: 49-55 (2005). (Pubitemid 41159882)
-
(2005)
Cytogenetic and Genome Research
, vol.110
, Issue.1-4
, pp. 49-55
-
-
Fontdevila, A.1
-
60
-
-
33745954428
-
Molecular cytogenetics and allotetraploidy in the red vizcacha rat, Tympanoctomys barrerae (Rodentia, Octodontidae)
-
DOI 10.1016/j.ygeno.2006.02.010, PII S0888754306000504
-
Gallardo MH, González CA, Cebrián I: Molecular cytogenetics and allotetraploidy in the red vizcacha rat, Tympanoctomys barrerae (Rodentia, Octodontidae). Genomics 88: 214-221 (2006). (Pubitemid 44062269)
-
(2006)
Genomics
, vol.88
, Issue.2
, pp. 214-221
-
-
Gallardo, M.H.1
Gonzalez, C.A.2
Cebrian, I.3
-
61
-
-
71049176982
-
Genome 10K community of scientists: Genome 10K: A proposal to obtain whole-genome sequence for 10,000 vertebrate species
-
Genome 10K Community of Scientists: Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. J Hered 100: 659-674 (2009).
-
(2009)
J Hered
, vol.100
, pp. 659-674
-
-
-
62
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
Ghildiyal M, Zamore PD: Small silencing RNAs: an expanding universe. Nat Rev Genet 10: 94-108 (2009).
-
(2009)
Nat Rev Genet
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
63
-
-
44449096738
-
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
-
DOI 10.1126/science.1157396
-
Ghildiyal M, Seitz H, Horwich MD, Li C, Du T, et al: Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells. Science 320: 1077-1081 (2008). (Pubitemid 351929549)
-
(2008)
Science
, vol.320
, Issue.5879
, pp. 1077-1081
-
-
Ghildiyal, M.1
Seitz, H.2
Horwich, M.D.3
Li, C.4
Du, T.5
Lee, S.6
Xu, J.7
Kittler, E.L.W.8
Zapp, M.L.9
Weng, Z.10
Zamore, P.D.11
-
64
-
-
39949083375
-
Conserved themes in small-RNA-mediated transposon control
-
Girard A, Hannon GJ: Conserved themes in small-RNA-mediated transposon control. Trends Cell Biol 18: 136-148 (2008).
-
(2008)
Trends Cell Biol
, vol.18
, pp. 136-148
-
-
Girard, A.1
Hannon, G.J.2
-
65
-
-
33745336617
-
A germline-specific class of small RNAs binds mammalian Piwi proteins
-
DOI 10.1038/nature04917, PII NATURE04917
-
Girard A, Sachidanandam R, Hannon GJ, Carmell MA: A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442: 199-202 (2006). (Pubitemid 44086566)
-
(2006)
Nature
, vol.442
, Issue.7099
, pp. 199-202
-
-
Girard, A.1
Sachidanandam, R.2
Hannon, G.J.3
Carmell, M.A.4
-
67
-
-
67749145406
-
A single-copy IS5- like transposon in the genome of the bdelloid rotifer Adineta vaga
-
Gladyshev EA, Arkhipova IR: A single-copy IS5- like transposon in the genome of the bdelloid rotifer Adineta vaga. Mol Biol Evol 26: 1921-1929 (2009a).
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1921-1929
-
-
Gladyshev, E.A.1
Arkhipova, I.R.2
-
68
-
-
70350221778
-
Rotifer rDNA-specific R9 retrotransposable elements generate an exceptionally long target site duplication upon insertion
-
Gladyshev EA, Arkhipova IR: Rotifer rDNA-specific R9 retrotransposable elements generate an exceptionally long target site duplication upon insertion. Gene 448: 145-150 (2009b).
-
(2009)
Gene
, vol.448
, pp. 145-150
-
-
Gladyshev, E.A.1
Arkhipova, I.R.2
-
69
-
-
77951989845
-
A subtelomeric non-LTR retrotransposon Hebe in the bdelloid rotifer Adineta vaga is subject to inactivation by deletions but not 5 ' truncations
-
Gladyshev EA, Arkhipova IR: A subtelomeric non-LTR retrotransposon Hebe in the bdelloid rotifer Adineta vaga is subject to inactivation by deletions but not 5 ' truncations. Mob DNA 1: 12 (2010a).
-
(2010)
Mob DNA
, vol.1
, pp. 12
-
-
Gladyshev, E.A.1
Arkhipova, I.R.2
-
70
-
-
77952007577
-
Genome structure of bdelloid rotifers: Shaped by asexuality or desiccation?
-
Gladyshev EA, Arkhipova IR: Genome structure of bdelloid rotifers: shaped by asexuality or desiccation? J Hered 101:S85-S93 (2010b).
-
(2010)
J Hered
, vol.101
-
-
Gladyshev, E.A.1
Arkhipova, I.R.2
-
72
-
-
33846924985
-
A deep-branching clade of retrovirus-like retrotransposons in bdelloid rotifers
-
DOI 10.1016/j.gene.2006.09.025, PII S0378111906006299
-
Gladyshev EA, Meselson M, Arkhipova IR: A deep-branching clade of retrovirus-like retrotransposons in bdelloid rotifers. Gene 390: 136-145 (2007). (Pubitemid 46241749)
-
(2007)
Gene
, vol.390
, Issue.1-2
, pp. 136-145
-
-
Gladyshev, E.A.1
Meselson, M.2
Arkhipova, I.R.3
-
73
-
-
45849089569
-
Massive horizontal gene transfer in bdelloid rotifers
-
DOI 10.1126/science.1156407
-
Gladyshev EA, Meselson M, Arkhipova IR: Massive horizontal gene transfer in bdelloid rotifers. Science 320: 1210-1213 (2008). (Pubitemid 351929508)
-
(2008)
Science
, vol.320
, Issue.5880
, pp. 1210-1213
-
-
Gladyshev, E.A.1
Meselson, M.2
Arkhipova, I.R.3
-
74
-
-
0034307716
-
It takes two transposons to tango: Transposable-element-mediated chromosomal rearrangements
-
Gray YH: It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements. Trends Genet 16: 461-468 (2000).
-
(2000)
Trends Genet
, vol.16
, pp. 461-468
-
-
Gray, Y.H.1
-
76
-
-
55249115975
-
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
-
Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, et al: Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 455: 1193-1197 (2008).
-
(2008)
Nature
, vol.455
, pp. 1193-1197
-
-
Grimson, A.1
Srivastava, M.2
Fahey, B.3
Woodcroft, B.J.4
Chiang, H.R.5
-
77
-
-
33745621037
-
A novel class of small RNAs in mouse spermatogenic cells
-
DOI 10.1101/gad.1434406
-
Grivna ST, Beyret E, Wang Z, Lin H: A novel class of small RNAs in mouse spermatogenic cells. Genes Dev 20: 1709-1714 (2006). (Pubitemid 43992878)
-
(2006)
Genes and Development
, vol.20
, Issue.13
, pp. 1709-1714
-
-
Grivna, S.T.1
Beyret, E.2
Wang, Z.3
Lin, H.4
-
78
-
-
13444279047
-
Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus, Caenorhabditis elegans and Caenorhabditis briggsae
-
DOI 10.1093/nar/gkh982
-
Gutierrez A, Sommer RJ: Evolution of dnmt-2 and mbd-2 -like genes in the free-living nematodes Pristionchus pacificus, Caenorhabditis elegans and Caenorhabditis briggsae. Nucleic Acids Res 32: 6388-6396 (2004). (Pubitemid 40202097)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.21
, pp. 6388-6396
-
-
Gutierrez, A.1
Sommer, R.J.2
-
79
-
-
70449588694
-
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids
-
Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, et al: Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc Natl Acad Sci USA 106: 17835-17840 (2009).
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 17835-17840
-
-
Ha, M.1
Lu, J.2
Tian, L.3
Ramachandran, V.4
Kasschau, K.D.5
-
80
-
-
0023474876
-
Non-reciprocal gonadal dysgenesis in hybrids of the chironomid midge Chironomus thummi. III. Germ line specific abnormalities
-
Hägele K, Oschmann B: Non-reciprocal gonadal dysgenesis in hybrids of the chironomid midge Chironomus thummi. III. Germ line specific abnormalities. Chromosoma 96: 50-54 (1987).
-
(1987)
Chromosoma
, vol.96
, pp. 50-54
-
-
Hägele, K.1
Oschmann, B.2
-
81
-
-
77956382542
-
Non-long terminal repeat (non-LTR) retrotransposons: Mechanisms, recent developments, and unanswered questions
-
Han JS: Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions. Mob DNA 1: 15 (2010).
-
(2010)
Mob DNA
, vol.1
, pp. 15
-
-
Han, J.S.1
-
82
-
-
0031468628
-
Modern thoughts on an ancyent marinere: Function, evolution, regulation
-
DOI 10.1146/annurev.genet.31.1.337
-
Hartl DL, Lohe AR, Lozovskaya ER: Modern thoughts on an ancyent marinere : function, evolution, regulation. Annu Rev Genet 31: 337-358 (1997). (Pubitemid 28023711)
-
(1997)
Annual Review of Genetics
, vol.31
, pp. 337-358
-
-
Hartl, D.L.1
Lohe, A.R.2
Lozovskaya, E.R.3
-
84
-
-
34548171771
-
Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis
-
Hellsten U, Khokha MK, Grammer TC, Harland RM, Richardson P, Rokhsar DS: Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis. BMC Biol 5: 31 (2007).
-
(2007)
BMC Biol
, vol.5
, pp. 31
-
-
Hellsten, U.1
Khokha, M.K.2
Grammer, T.C.3
Harland, R.M.4
Richardson, P.5
Rokhsar, D.S.6
-
85
-
-
77951823093
-
The genome of the Western clawed frog Xenopus tropicalis
-
Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, et al: The genome of the Western clawed frog Xenopus tropicalis. Science 328: 633-636 (2010).
-
(2010)
Science
, vol.328
, pp. 633-636
-
-
Hellsten, U.1
Harland, R.M.2
Gilchrist, M.J.3
Hendrix, D.4
Jurka, J.5
-
86
-
-
0020447816
-
Selfish DNA: A sexually transmitted nuclear parasite
-
Hickey DA: Selfish DNA: a sexually-transmitted nuclear parasite. Genetics 101: 519-531 (1982). (Pubitemid 13241272)
-
(1982)
Genetics
, vol.101
, Issue.3-4
, pp. 519-531
-
-
Hickey, D.A.1
-
87
-
-
54349089563
-
Zili is required for germ cell differentiation and meiosis in zebrafish
-
Houwing S, Berezikov E, Ketting RF: Zili is required for germ cell differentiation and meiosis in zebrafish. EMBO J 27: 2702-2711 (2008).
-
(2008)
EMBO J
, vol.27
, pp. 2702-2711
-
-
Houwing, S.1
Berezikov, E.2
Ketting, R.F.3
-
88
-
-
58449092926
-
Degenerate tetraploidy was established before bdelloid rotifer families diverged
-
Hur JH, Van Doninck K, Mandigo ML, Meselson M: Degenerate tetraploidy was established before bdelloid rotifer families diverged. Mol Biol Evol 26: 375-383 (2009).
-
(2009)
Mol Biol Evol
, vol.26
, pp. 375-383
-
-
Hur, J.H.1
Van Doninck, K.2
Mandigo, M.L.3
Meselson, M.4
-
89
-
-
84864001526
-
Global analysis of the small RNA transcriptome in different ploidies and genomic combinations of a vertebrate complex - The Squalius alburnoides
-
Inácio A, Pinho J, Pereira PM, Comai L, Coelho MM: Global analysis of the small RNA transcriptome in different ploidies and genomic combinations of a vertebrate complex - the Squalius alburnoides. PLoS One 7:e41158 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Inácio, A.1
Pinho, J.2
Pereira, P.M.3
Comai, L.4
Coelho, M.M.5
-
90
-
-
0001322933
-
International human genome sequencing consortium: Human genome
-
International Human Genome Sequencing Consortium: Human genome. Nature 409: 860-921 (2001).
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
91
-
-
61549103128
-
Changing by doubling', the impact of whole genome duplications in the evolution of eukaryotes
-
Jaillon O, Aury JM, Wincker P: 'Changing by doubling', the impact of whole genome duplications in the evolution of eukaryotes. C R Biol 332: 241-253 (2009).
-
(2009)
C R Biol
, vol.332
, pp. 241-253
-
-
Jaillon, O.1
Aury, J.M.2
Wincker, P.3
-
92
-
-
84876528357
-
Xenbase: Expansion and updates of the Xenopus model organism database
-
James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, et al: Xenbase: expansion and updates of the Xenopus model organism database. Nucleic Acids Res 41:D865-D870 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
-
-
James-Zorn, C.1
Ponferrada, V.G.2
Jarabek, C.J.3
Burns, K.A.4
Segerdell, E.J.5
-
93
-
-
77957944090
-
Genome evolution in Reptilia, the sister group of mammals
-
Janes DE, Organ CL, Fujita MK, Shedlock AM, Edwards SV: Genome evolution in Reptilia, the sister group of mammals. Annu Rev Genomics Hum Genet 11: 239-264 (2010).
-
(2010)
Annu Rev Genomics Hum Genet
, vol.11
, pp. 239-264
-
-
Janes, D.E.1
Organ, C.L.2
Fujita, M.K.3
Shedlock, A.M.4
Edwards, S.V.5
-
94
-
-
80755169456
-
Uniting germline and stem cells: The function of Piwi proteins and the piRNA pathway in diverse organisms
-
Juliano C, Wang J, Lin H: Uniting germline and stem cells: the function of Piwi proteins and the piRNA pathway in diverse organisms. Annu Rev Genet 45: 447-469 (2011).
-
(2011)
Annu Rev Genet
, vol.45
, pp. 447-469
-
-
Juliano, C.1
Wang, J.2
Lin, H.3
-
97
-
-
33645227457
-
Self-synthesizing DNA transposons in eukaryotes
-
Kapitonov VV, Jurka J: Self-synthesizing DNA transposons in eukaryotes. Proc Natl Acad Sci USA 103: 4540-4545 (2006).
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4540-4545
-
-
Kapitonov, V.V.1
Jurka, J.2
-
98
-
-
34848876954
-
Helitrons on a roll: eukaryotic rolling-circle transposons
-
DOI 10.1016/j.tig.2007.08.004, PII S0168952507002703
-
Kapitonov VV, Jurka J: Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet 23: 521-529 (2007). (Pubitemid 47503448)
-
(2007)
Trends in Genetics
, vol.23
, Issue.10
, pp. 521-529
-
-
Kapitonov, V.V.1
Jurka, J.2
-
99
-
-
42349111552
-
A universal classification of eukaryotic transposable elements implemented in Repbase
-
DOI 10.1038/nrg2165-c1, PII NRG2165C1
-
Kapitonov VV, Jurka J: A universal classification of eukaryotic transposable elements implemented in Repbase. Nat Rev Genet 9: 411-412 (2008). (Pubitemid 351556058)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.5
, pp. 411-412
-
-
Kapitonov, V.V.1
Jurka, J.2
-
100
-
-
1542513556
-
Mobile Elements: Drivers of Genome Evolution
-
DOI 10.1126/science.1089670
-
Kazazian HH Jr: Mobile elements: drivers of genome evolution. Science 303: 1626-1632 (2004). (Pubitemid 38338313)
-
(2004)
Science
, vol.303
, Issue.5664
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
101
-
-
84919688168
-
Lost sex in the reptiles: Constraints and correlations
-
Schön I Martens K van Dijk P (eds): Springer, Berlin
-
Kearney M, Fujita MK, Ridenour J: Lost sex in the reptiles: constraints and correlations, in Schön I, Martens K, van Dijk P (eds): Lost Sex, pp 447-474 (Springer, Berlin 2009).
-
(2009)
Lost Sex
, pp. 447-474
-
-
Kearney, M.1
Fujita, M.K.2
Ridenour, J.3
-
102
-
-
84870265728
-
Drosophila interspecific hybrids phenocopy piRNApathway mutants
-
Kelleher ES, Edelman NB, Barbash DA: Drosophila interspecific hybrids phenocopy piRNApathway mutants. PLoS Biol 10:e1001428 (2012).
-
(2012)
PLoS Biol
, vol.10
-
-
Kelleher, E.S.1
Edelman, N.B.2
Barbash, D.A.3
-
103
-
-
79958231735
-
Wheat hybridization and polyploidization results in deregulation of small RNAs
-
Kenan-Eichler M, Leshkowitz D, Tal L, Noor E, Melamed-Bessudo C, et al: Wheat hybridization and polyploidization results in deregulation of small RNAs. Genetics 188: 263-272 (2011).
-
(2011)
Genetics
, vol.188
, pp. 263-272
-
-
Kenan-Eichler, M.1
Leshkowitz, D.2
Tal, L.3
Noor, E.4
Melamed-Bessudo, C.5
-
104
-
-
0017706803
-
Hybrid dysgenesis in Drosophila melanogaster: A syndrome of aberrant traits including mutation, sterility and male recombination
-
Kidwell MG, Kidwell JF, Sved JA: Hybrid dysgenesis in Drosophila melanogaster : A syndrome of aberrant traits including mutation, sterility and male recombination. Genetics 86: 813-833 (1977). (Pubitemid 8184448)
-
(1977)
Genetics
, vol.86
, Issue.4
, pp. 813-833
-
-
Kidwell, M.G.1
Kidwell, J.F.2
Sved, J.A.3
-
105
-
-
67349281394
-
Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stability
-
Kirino Y, Kim N, de Planell-Saguer M, Khandros E, Chiorean S, et al: Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stability. Nat Cell Biol 11: 652-658 (2009).
-
(2009)
Nat Cell Biol
, vol.11
, pp. 652-658
-
-
Kirino, Y.1
Kim, N.2
De Planell-Saguer, M.3
Khandros, E.4
Chiorean, S.5
-
106
-
-
0032971565
-
Interspecific hybridization increases transposition rates of Osvaldo
-
Labrador M, Farre M, Utzet F, Fontdevila A: Interspecific hybridization increases transposition rates of Osvaldo. Mol Biol Evol 16: 931-937 (1999). (Pubitemid 29314171)
-
(1999)
Molecular Biology and Evolution
, vol.16
, Issue.7
, pp. 931-937
-
-
Labrador, M.1
Farre, M.2
Utzet, F.3
Fontdevila, A.4
-
107
-
-
78049505143
-
Sperm-dependent parthenogenesis and hybridogenesis in teleost fishes
-
Schön I Martens K van Dijk P (eds): Springer, Berlin
-
Lamatsch DK, Stöck M: Sperm-dependent parthenogenesis and hybridogenesis in teleost fishes, in Schön I, Martens K, van Dijk P (eds): Lost Sex, pp 399-432 (Springer, Berlin 2009).
-
(2009)
Lost Sex
, pp. 399-432
-
-
Lamatsch, D.K.1
Stöck, M.2
-
108
-
-
39049132169
-
Analysis of small endogenous RNAs
-
Chapter 26:Unit26.7
-
Lau NC: Analysis of small endogenous RNAs. Curr Protoc Mol Biol, Chapter 26:Unit26.7 (2008).
-
(2008)
Curr Protoc Mol Biol
-
-
Lau, N.C.1
-
109
-
-
70350568326
-
Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi
-
Lau NC, Ohsumi T, Borowsky M, Kingston RE, Blower MD: Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi. EMBO J 28: 2945-2958 (2009).
-
(2009)
EMBO J
, vol.28
, pp. 2945-2958
-
-
Lau, N.C.1
Ohsumi, T.2
Borowsky, M.3
Kingston, R.E.4
Blower, M.D.5
-
110
-
-
84863624978
-
C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts
-
Lee HC, Gu W, Shirayama M, Youngman E, Conte D Jr, Mello CC: C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts. Cell 150: 78-87 (2012).
-
(2012)
Cell
, vol.150
, pp. 78-87
-
-
Lee, H.C.1
Gu, W.2
Shirayama, M.3
Youngman, E.4
Conte Jr., D.5
Mello, C.C.6
-
111
-
-
80051997952
-
Dynamic interactions between transposable elements and their hosts
-
Levin HL, Moran JV: Dynamic interactions between transposable elements and their hosts. Nat Rev Genet 12: 615-627 (2011).
-
(2011)
Nat Rev Genet
, vol.12
, pp. 615-627
-
-
Levin, H.L.1
Moran, J.V.2
-
112
-
-
65549118489
-
Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
-
Li C, Vagin VV, Lee S, Xu J, Ma S, et al: Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. Cell 137: 509-521 (2009).
-
(2009)
Cell
, vol.137
, pp. 509-521
-
-
Li, C.1
Vagin, V.V.2
Lee, S.3
Xu, J.4
Ma, S.5
-
113
-
-
70449525442
-
Characterization of a novel Tc1-like transposon from bream (Cyprinidae, Megalobrama ) and its genetic variation in the polyploidy progeny of bream-red crucian carp crosses
-
Liu D, You C, Liu S, Liu L, Duan W, et al: Characterization of a novel Tc1-like transposon from bream (Cyprinidae, Megalobrama ) and its genetic variation in the polyploidy progeny of bream-red crucian carp crosses. J Mol Evol 69: 395-403 (2009).
-
(2009)
J Mol Evol
, vol.69
, pp. 395-403
-
-
Liu, D.1
You, C.2
Liu, S.3
Liu, L.4
Duan, W.5
-
114
-
-
0025084610
-
A hybrid dysgenesis syndrome in Drosophila virilis
-
Lozovskaya ER, Scheinker VS, Evgen'ev MB: A hybrid dysgenesis syndrome in Drosophila virilis. Genetics 126: 619-623 (1990). (Pubitemid 20372380)
-
(1990)
Genetics
, vol.126
, Issue.3
, pp. 619-623
-
-
Lozovskaya, E.R.1
Scheinker, V.S.2
Evgen'ev, M.B.3
-
116
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M, Conery JS: The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155 (2000).
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
117
-
-
36248956101
-
Sex in the postgenomic era
-
DOI 10.1016/j.tree.2007.07.006, PII S0169534707002595
-
Mable BK: Sex in the postgenomic era. Trends Ecol Evol 22: 559-561 (2007). (Pubitemid 350122782)
-
(2007)
Trends in Ecology and Evolution
, vol.22
, Issue.11
, pp. 559-561
-
-
Mable, B.K.1
-
118
-
-
42549170465
-
Gene expression analysis of the ovary of hybrid females of Xenopus laevis and X. muelleri
-
Malone JH, Michalak P: Gene expression analysis of the ovary of hybrid females of Xenopus laevis and X. muelleri. BMC Evol Biol 8: 82 (2008a).
-
(2008)
BMC Evol Biol
, vol.8
, pp. 82
-
-
Malone, J.H.1
Michalak, P.2
-
119
-
-
37849042593
-
Physiological sex predicts hybrid sterility regardless of genotype
-
Malone JH, Michalak P: Physiological sex predicts hybrid sterility regardless of genotype. Science 319: 59 (2008b).
-
(2008)
Science
, vol.319
, pp. 59
-
-
Malone, J.H.1
Michalak, P.2
-
120
-
-
40749108388
-
Sterility and gene expression in hybrid males of Xenopus laevis and X. muelleri
-
Malone JH, Chrzanowski TH, Michalak P: Sterility and gene expression in hybrid males of Xenopus laevis and X. muelleri. PLoS One 2:e781 (2007).
-
(2007)
PLoS One
, vol.2
-
-
Malone, J.H.1
Chrzanowski, T.H.2
Michalak, P.3
-
121
-
-
0034686084
-
Evidence for the evolution of bdelloid rotifers without sexual reproduction or genetic exchange
-
DOI 10.1126/science.288.5469.1211
-
Mark Welch D, Meselson M: Evidence for the evolution of bdelloid rotifers without sexual reproduction or genetic exchange. Science 288: 1211-1215 (2000). (Pubitemid 30367193)
-
(2000)
Science
, vol.288
, Issue.5469
, pp. 1211-1215
-
-
Welch, D.M.1
Meselson, M.2
-
123
-
-
84919597128
-
Bdelloid rotifers: Progress in understanding the success of an evolutionary scandal
-
Schön I Martens K van Dijk P (eds): Springer, Berlin
-
Mark Welch DB, Ricci C, Meselson M: Bdelloid rotifers: progress in understanding the success of an evolutionary scandal, in Schön I, Martens K, van Dijk P (eds): Lost Sex, pp 259-279 (Springer, Berlin 2009).
-
(2009)
Lost Sex
, pp. 259-279
-
-
Mark Welch, D.B.1
Ricci, C.2
Meselson, M.3
-
124
-
-
0030443143
-
Gypsy/Ty3-like elements in the genome of the terrestrial salamander Hydromantes (amphibia, urodela)
-
DOI 10.1007/BF02202106
-
Marracci S, Batistoni R, Pesole G, Citti L, Nardi I: Gypsy/Ty3 -like elements in the genome of the terrestrial salamander Hydromantes (Amphibia, Urodela). J Mol Evol 43: 584-593 (1996). (Pubitemid 27024013)
-
(1996)
Journal of Molecular Evolution
, vol.43
, Issue.6
, pp. 584-593
-
-
Marracci, S.1
Batistoni, R.2
Pesole, G.3
Citti, L.4
Nardi, I.5
-
125
-
-
77950948347
-
Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis
-
Martienssen RA: Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis. New Phytol 186: 46-53 (2010).
-
(2010)
New Phytol
, vol.186
, pp. 46-53
-
-
Martienssen, R.A.1
-
126
-
-
60649121125
-
Retroposons of salmonoid fishes (Actinopterygii: Salmonoidei) and their evolution
-
Matveev V, Okada N: Retroposons of salmonoid fishes (Actinopterygii: Salmonoidei) and their evolution. Gene 434: 16-28 (2009).
-
(2009)
Gene
, vol.434
, pp. 16-28
-
-
Matveev, V.1
Okada, N.2
-
128
-
-
0033200356
-
Rapid structural and epigenetic changes in polyploid and aneuploid genomes
-
Matzke MA, Scheid OM, Matzke AJM: Rapid structural and epigenetic changes in polyploid and aneuploid genomes. Bioessays 21: 761-767 (1999). (Pubitemid 29427364)
-
(1999)
BioEssays
, vol.21
, Issue.9
, pp. 761-767
-
-
Matzke, M.A.1
Scheid, O.M.2
Matzke, A.J.M.3
-
129
-
-
0021715393
-
The significance of responses of the genome to challenge
-
McClintock B: The significance of responses of the genome to challenge. Science 226: 792-801 (1984). (Pubitemid 15200674)
-
(1984)
Science
, vol.226
, Issue.4676
, pp. 792-801
-
-
McClintock, B.1
-
130
-
-
41149128330
-
The genetic legacy of polyploid Bolivian Daphnia: The tropical Andes as a source for the North and South American D. pulicaria complex
-
DOI 10.1111/j.1365-294X.2007.03679.x
-
Mergeay J, Aguilera X, Declerck S, Petrusek A,Huyse T, De Meester L: The genetic legacy of polyploid Bolivian Daphnia : the tropical Andes as a source for the North and South American D. pulicaria complex. Mol Ecol 17: 1789-800 (2008). (Pubitemid 351441706)
-
(2008)
Molecular Ecology
, vol.17
, Issue.7
, pp. 1789-1800
-
-
Mergeay, J.1
Aguilera, X.2
Declerck, S.3
Petrusek, A.4
Huyse, T.5
De Meester, L.6
-
131
-
-
57749186418
-
Epigenetic, transposon and small RNA determinants of hybrid dysfunctions
-
DOI 10.1038/hdy.2008.48, PII HDY200848
-
Michalak P: Epigenetic, transposon and small RNA determinants of hybrid dysfunctions. Heredity 102: 45-50 (2009). (Pubitemid 50215875)
-
(2009)
Heredity
, vol.102
, Issue.1
, pp. 45-50
-
-
Michalak, P.1
-
132
-
-
77950076986
-
An eruption of mobile elements in genomes of hybrid sunflowers
-
Michalak P: An eruption of mobile elements in genomes of hybrid sunflowers. Heredity 104: 329-330 (2010).
-
(2010)
Heredity
, vol.104
, pp. 329-330
-
-
Michalak, P.1
-
133
-
-
38349049448
-
Testis-derived microRNA profiles of African clawed frogs (Xenopus) and their sterile hybrids
-
Michalak P, Malone JH: Testis-derived microRNA profiles of African clawed frogs (Xenopus) and their sterile hybrids. Genomics 91: 158-164 (2008).
-
(2008)
Genomics
, vol.91
, pp. 158-164
-
-
Michalak, P.1
Malone, J.H.2
-
134
-
-
84865554113
-
Denovo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodonpunctatus)
-
Miller HC, Biggs PJ, Voelckel C, Nelson NJ: Denovo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodonpunctatus). BMC Genomics 13: 439 (2012).
-
(2012)
BMC Genomics
, vol.13
, pp. 439
-
-
Miller, H.C.1
Biggs, P.J.2
Voelckel, C.3
Nelson, N.J.4
-
135
-
-
84872138637
-
Recombination-restarted replication makes inverted chromosome fusions at inverted repeats
-
Mizuno K, Miyabe I, Schalbetter SA, Carr AM, Murray JM: Recombination-restarted replication makes inverted chromosome fusions at inverted repeats. Nature 493: 246-249 (2013).
-
(2013)
Nature
, vol.493
, pp. 246-249
-
-
Mizuno, K.1
Miyabe, I.2
Schalbetter, S.A.3
Carr, A.M.4
Murray, J.M.5
-
136
-
-
0037145031
-
Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in Tetrahymena
-
DOI 10.1016/S0092-8674(02)00909-1
-
Mochizuki K, Fine NA, Fujisawa T, Gorovsky MA: Analysis of a piwi -related gene implicates small RNAs in genome rearrangement in Tetrahymena. Cell 110: 689-699 (2002). (Pubitemid 35283959)
-
(2002)
Cell
, vol.110
, Issue.6
, pp. 689-699
-
-
Mochizuki, K.1
Fine, N.A.2
Fujisawa, T.3
Gorovsky, M.A.4
-
137
-
-
1542563409
-
Mouse genome sequencing consortium: Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing Consortium: Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562 (2002).
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
-
138
-
-
43749086317
-
Conservation of small RNA pathways in platypus
-
DOI 10.1101/gr.073056.107
-
Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, et al: Conservation of small RNA pathways in platypus. Genome Res 18: 995-1004 (2008). (Pubitemid 351793072)
-
(2008)
Genome Research
, vol.18
, Issue.6
, pp. 995-1004
-
-
Murchison, E.P.1
Kheradpour, P.2
Sachidanandam, R.3
Smith, C.4
Hodges, E.5
Xuan, Z.6
Kellis, M.7
Grutzner, F.8
Stark, A.9
Hannon, G.J.10
-
139
-
-
79952106487
-
Unisexual reproduction among vertebrates
-
Neaves WB, Baumann P: Unisexual reproduction among vertebrates. Trends Genet 27: 81-88 (2011).
-
(2011)
Trends Genet
, vol.27
, pp. 81-88
-
-
Neaves, W.B.1
Baumann, P.2
-
140
-
-
34250902354
-
Genome sequence of Aedes aegypti, a major arbovirus vector
-
DOI 10.1126/science.1138878
-
Nene V, Wortman JR, Lawson D, Haas B, Kodira C, et al: Genome sequence of Aedes aegypti, a major arbovirus vector. Science 316: 1718-1723 (2007). (Pubitemid 46988541)
-
(2007)
Science
, vol.316
, Issue.5832
, pp. 1718-1723
-
-
Nene, V.1
Wortman, J.R.2
Lawson, D.3
Haas, B.4
Kodira, C.5
Tu, Z.6
Loftus, B.7
Xi, Z.8
Megy, K.9
Grabherr, M.10
Ren, Q.11
Zdobnov, E.M.12
Lobo, N.F.13
Campbell, K.S.14
Brown, S.E.15
Bonaldo, M.F.16
Zhu, J.17
Sinkins, S.P.18
Hogenkamp, D.G.19
Amedeo, P.20
Arensburger, P.21
Atkinson, P.W.22
Bidwell, S.23
Biedler, J.24
Birney, E.25
Bruggner, R.V.26
Costas, J.27
Coy, M.R.28
Crabtree, J.29
Crawford, M.30
DeBruyn, B.31
DeCaprio, D.32
Eiglmeier, K.33
Eisenstadt, E.34
El-Dorry, H.35
Gelbart, W.M.36
Gomes, S.L.37
Hammond, M.38
Hannick, L.I.39
Hogan, J.R.40
Holmes, M.H.41
Jaffe, D.42
Johnston, J.S.43
Kennedy, R.C.44
Koo, H.45
Kravitz, S.46
Kriventseva, E.V.47
Kulp, D.48
LaButti, K.49
Lee, E.50
Li, S.51
Lovin, D.D.52
Mao, C.53
Mauceli, E.54
Menck, C.F.M.55
Miller, J.R.56
Montgomery, P.57
Mori, A.58
Nascimento, A.L.59
Naveira, H.F.60
Nusbaum, C.61
O'Leary, S.62
Orvis, J.63
Pertea, M.64
Quesneville, H.65
Reidenbach, K.R.66
Rogers, Y.-H.67
Roth, C.W.68
Schneider, J.R.69
Schatz, M.70
Shumway, M.71
Stanke, M.72
Stinson, E.O.73
Tubio, J.M.C.74
VanZee, J.P.75
Verjovski-Almeida, S.76
Werner, D.77
White, O.78
Wyder, S.79
Zeng, Q.80
Zhao, Q.81
Zhao, Y.82
Hill, C.A.83
Raikhel, A.S.84
Soares, M.B.85
Knudson, D.L.86
Lee, N.H.87
Galagan, J.88
Salzberg, S.L.89
Paulsen, I.T.90
Dimopoulos, G.91
Collins, F.H.92
Birren, B.93
Fraser-Liggett, C.M.94
Severson, D.W.95
more..
-
141
-
-
0037208862
-
The Evolution of Alternative Genetic Systems in Insects
-
DOI 10.1146/annurev.ento.48.091801.112703
-
Normark BB: The evolution of alternative genetic systems in insects. Annu Rev Entomol 48: 397-423 (2003). (Pubitemid 37365398)
-
(2003)
Annual Review of Entomology
, vol.48
, pp. 397-423
-
-
Normark, B.B.1
-
142
-
-
70350411861
-
Independent and parallel lateral transfer of DNA transposons in tetrapod genomes
-
Novick P, Smith J, Ray D, Boissinot S: Independent and parallel lateral transfer of DNA transposons in tetrapod genomes. Gene 449: 85-94 (2010).
-
(2010)
Gene
, vol.449
, pp. 85-94
-
-
Novick, P.1
Smith, J.2
Ray, D.3
Boissinot, S.4
-
143
-
-
79952274187
-
The evolution and diversity of DNA transposons in the genome of the lizard Anolis carolinensis
-
Novick PA, Smith JD, Floumanhaft M, Ray DA, Boissinot S: The evolution and diversity of DNA transposons in the genome of the lizard Anolis carolinensis. Genome Biol Evol 3: 1-14 (2011).
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1-14
-
-
Novick, P.A.1
Smith, J.D.2
Floumanhaft, M.3
Ray, D.A.4
Boissinot, S.5
-
145
-
-
77951822944
-
The first cytogenetic map of the tuatara, Sphenodon punctatus
-
O'Meally D, Miller H, Patel HR, Graves JA, Ezaz T: The first cytogenetic map of the tuatara, Sphenodon punctatus. Cytogenet Genome Res 127: 213-223 (2009).
-
(2009)
Cytogenet Genome Res
, vol.127
, pp. 213-223
-
-
O'meally, D.1
Miller, H.2
Patel, H.R.3
Graves, J.A.4
Ezaz, T.5
-
146
-
-
0009673698
-
Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid
-
DOI 10.1038/29985
-
O'Neill RJ, O'Neill MJ, Graves JA: Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid. Nature 393: 68-72 (1998). (Pubitemid 28240255)
-
(1998)
Nature
, vol.393
, Issue.6680
, pp. 68-72
-
-
Waugh O'Neill, R.J.1
O'Neill, M.J.2
Marshall Graves, J.A.3
-
147
-
-
0035105887
-
Chromosome heterozygosity and de novo chromosome rearrangements in mammalian interspecies hybrids
-
DOI 10.1007/s003350010270
-
O'Neill RJ, Eldridge MD, Graves JA: Chromosome heterozygosity and de novo chromosome rearrangements in mammalian interspecies hybrids. Mamm Genome 12: 256-259 (2001). (Pubitemid 32217651)
-
(2001)
Mammalian Genome
, vol.12
, Issue.3
, pp. 256-259
-
-
O'Neill, R.J.W.1
Eldridge, M.D.B.2
Graves, J.A.M.3
-
148
-
-
77957865417
-
Drosophila I-R hybrid dysgenesis is associated with catastrophic meiosis and abnormal zygote formation
-
Orsi GA, Joyce EF, Couble P, McKim KS, Loppin B: Drosophila I-R hybrid dysgenesis is associated with catastrophic meiosis and abnormal zygote formation. J Cell Sci 123: 3515-3524 (2010).
-
(2010)
J Cell Sci
, vol.123
, pp. 3515-3524
-
-
Orsi, G.A.1
Joyce, E.F.2
Couble, P.3
McKim, K.S.4
Loppin, B.5
-
149
-
-
0034500239
-
Polyploid incidence and evolution
-
DOI 10.1146/annurev.genet.34.1.401
-
Otto SP, Whitton J: Polyploid incidence and evolution. Annu Rev Genet 34: 401-437 (2000). (Pubitemid 32065927)
-
(2000)
Annual Review of Genetics
, vol.34
, pp. 401-437
-
-
Otto, S.P.1
Whitton, J.2
-
150
-
-
77950959077
-
Impact of transposable elements on the organization and function of allopolyploid genomes
-
Parisod C, Alix K, Just J, Petit M, Sarilar V, et al: Impact of transposable elements on the organization and function of allopolyploid genomes. New Phytol 186: 37-45 (2010).
-
(2010)
New Phytol
, vol.186
, pp. 37-45
-
-
Parisod, C.1
Alix, K.2
Just, J.3
Petit, M.4
Sarilar, V.5
-
151
-
-
0028110848
-
Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene
-
Pelisson A, Song SU, Prud'homme N, Smith PA, Bucheton A, Corces VG: Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene. EMBO J 13: 4401-4411 (1994). (Pubitemid 24295212)
-
(1994)
EMBO Journal
, vol.13
, Issue.18
, pp. 4401-4411
-
-
Pelisson, A.1
Sun Song, U.2
Prud'homme, N.3
Smith, P.A.4
Bucheton, A.5
Corces, V.G.6
-
153
-
-
0002823333
-
A maternally inherited factor inducing sterility in Drosophila melanogaster
-
Picard G, L'Héritier P: A maternally inherited factor inducing sterility in Drosophila melanogaster. Drosophila Inf Serv 46: 54 (1971).
-
(1971)
Drosophila Inf Serv
, vol.46
, pp. 54
-
-
Picard, G.1
L'héritier, P.2
-
154
-
-
0034574433
-
Genome gymnastics: Unique modes of DNA evolution and processing in ciliates
-
Prescott DM: Genome gymnastics: unique modes of DNA evolution and processing in ciliates. Nat Rev Genet 1: 191-198 (2000).
-
(2000)
Nat Rev Genet
, vol.1
, pp. 191-198
-
-
Prescott, D.M.1
-
155
-
-
33846939973
-
Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses
-
DOI 10.1016/j.gene.2006.08.008, PII S0378111906005373
-
Pritham EJ, Putliwala T, Feschotte C: Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses. Gene 390: 3-17 (2007). (Pubitemid 46241741)
-
(2007)
Gene
, vol.390
, Issue.1-2
, pp. 3-17
-
-
Pritham, E.J.1
Putliwala, T.2
Feschotte, C.3
-
156
-
-
80051783754
-
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development
-
Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, et al: Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol 12:R81 (2011).
-
(2011)
Genome Biol
, vol.12
-
-
Renfree, M.B.1
Papenfuss, A.T.2
Deakin, J.E.3
Lindsay, J.4
Heider, T.5
-
157
-
-
77954344477
-
LTR retroelements in the genome of Daphnia pulex
-
Rho M, Schaack S, Gao X, Kim S, Lynch M, Tang H: LTR retroelements in the genome of Daphnia pulex. BMC Genomics 11: 425 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 425
-
-
Rho, M.1
Schaack, S.2
Gao, X.3
Kim, S.4
Lynch, M.5
Tang, H.6
-
158
-
-
0036121338
-
Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome
-
DOI 10.1101/gr.210802. Article published online before print in February 2002
-
Rizzon C, Marais G, Gouy M, Biémont C: Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome. Genome Res 12: 400-407 (2002). (Pubitemid 34233014)
-
(2002)
Genome Research
, vol.12
, Issue.3
, pp. 400-407
-
-
Rizzon, C.1
Marais, G.2
Gouy, M.3
Biemont, C.4
-
159
-
-
77955101011
-
Small RNAbased silencing strategies for transposons in the process of invading Drosophila species
-
Rozhkov NV, Aravin AA, Zelentsova ES, Schostak NG, Sachidanandam R, et al: Small RNAbased silencing strategies for transposons in the process of invading Drosophila species. RNA 16: 1634-1645 (2010).
-
(2010)
RNA
, vol.16
, pp. 1634-1645
-
-
Rozhkov, N.V.1
Aravin, A.A.2
Zelentsova, E.S.3
Schostak, N.G.4
Sachidanandam, R.5
-
160
-
-
84874278510
-
Evolution and dynamics of small RNA response to a retroelement invasion in Drosophila
-
Rozhkov NV, Schostak NG, Zelentsova ES, Yushenova IA, Zatsepina OG, Evgen'ev MB: Evolution and dynamics of small RNA response to a retroelement invasion in Drosophila. Mol Biol Evol 30: 397-408 (2013).
-
(2013)
Mol Biol Evol
, vol.30
, pp. 397-408
-
-
Rozhkov, N.V.1
Schostak, N.G.2
Zelentsova, E.S.3
Yushenova, I.A.4
Zatsepina, O.G.5
Evgen'ev, M.B.6
-
161
-
-
62649144073
-
Antiviral immunity in Drosophila requires systematic RNA interference spread
-
Saleh MC, Tassetto M, van Rij RP, Goic B, Gausson V, et al: Antiviral immunity in Drosophila requires systematic RNA interference spread. Nature 458: 346-350 (2009).
-
(2009)
Nature
, vol.458
, pp. 346-350
-
-
Saleh, M.C.1
Tassetto, M.2
Van Rij, R.P.3
Goic, B.4
Gausson, V.5
-
162
-
-
77956492291
-
DNA transposon dynamics in populations of Daphnia pulex with and without sex
-
Schaack S, Pritham EJ, Wolf A, Lynch M: DNA transposon dynamics in populations of Daphnia pulex with and without sex. Proc Biol Sci 277: 2381-2387 (2010a).
-
(2010)
Proc Biol Sci
, vol.277
, pp. 2381-2387
-
-
Schaack, S.1
Pritham, E.J.2
Wolf, A.3
Lynch, M.4
-
163
-
-
77951602285
-
DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex
-
Schaack S, Choi E, Lynch M, Pritham EJ: DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex. Genome Biol 11:R46 (2010b).
-
(2010)
Genome Biol
, vol.11
-
-
Schaack, S.1
Choi, E.2
Lynch, M.3
Pritham, E.J.4
-
164
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, et al: The B73 maize genome: complexity, diversity, and dynamics. Science 326: 1112-1115 (2009).
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
-
166
-
-
17044452651
-
DNA methylation in placentas of interspecies mouse hybrids
-
Schütt S, Florl AR, Shi W, Hemberger M, Orth A, et al: DNA methylation in placentas of interspecies mouse hybrids. Genetics 165: 223-228 (2003). (Pubitemid 37204067)
-
(2003)
Genetics
, vol.165
, Issue.1
, pp. 223-228
-
-
Schutt, S.1
Florl, A.R.2
Shi, W.3
Hemberger, M.4
Orth, A.5
Otto, S.6
Schulzt, W.A.7
Fundele, R.H.8
-
167
-
-
36549038087
-
Consequences of genome duplication
-
DOI 10.1016/j.gde.2007.09.007, PII S0959437X07001724, Genomes and Evolution
-
Semon M, Wolfe KH: Consequences of genome duplication. Curr Opin Genet Dev 17: 505-512 (2007). (Pubitemid 350186344)
-
(2007)
Current Opinion in Genetics and Development
, vol.17
, Issue.6
, pp. 505-512
-
-
Semon, M.1
Wolfe, K.H.2
-
168
-
-
33947098659
-
Phylogenomic investigation of CR1 LINE diversity in reptiles
-
Shedlock AM: Phylogenomic investigation of CR1 LINE diversity in reptiles. Syst Biol 55: 902-911 (2006).
-
(2006)
Syst Biol
, vol.55
, pp. 902-911
-
-
Shedlock, A.M.1
-
169
-
-
33847281471
-
Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome
-
DOI 10.1073/pnas.0606204104
-
Shedlock AM, Botka CW, Zhao S, Shetty J, Zhang T, et al: Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome. Proc Natl Acad Sci USA 104: 2767-2772 (2007). (Pubitemid 46327954)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.8
, pp. 2767-2772
-
-
Shedlock, A.M.1
Botka, C.W.2
Zhao, S.3
Shetty, J.4
Zhang, T.5
Liu, J.S.6
Deschavanne, P.J.7
Edwards, S.V.8
-
170
-
-
84863631177
-
PiRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline
-
Shirayama M, Seth M, Lee HC, Gu W, Ishidate T, et al: piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline. Cell 150: 65-77 (2012).
-
(2012)
Cell
, vol.150
, pp. 65-77
-
-
Shirayama, M.1
Seth, M.2
Lee, H.C.3
Gu, W.4
Ishidate, T.5
-
171
-
-
46749123801
-
How selfish retrotransposons are silenced in Drosophila germline and somatic cells
-
Siomi MC, Saito K, Siomi H: How selfish retrotransposons are silenced in Drosophila germline and somatic cells. FEBS Lett 582: 2473-2478 (2008).
-
(2008)
FEBS Lett
, vol.582
, pp. 2473-2478
-
-
Siomi, M.C.1
Saito, K.2
Siomi, H.3
-
174
-
-
0029162810
-
Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution
-
Song K, Lu P, Tang K, Osborn TC: Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc Natl Acad Sci USA 92: 7719-7723 (1995).
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 7719-7723
-
-
Song, K.1
Lu, P.2
Tang, K.3
Osborn, T.C.4
-
175
-
-
84870905285
-
Small RNAs of opposite sign... but same absolute value
-
Sontheimer EJ: Small RNAs of opposite sign... but same absolute value. Cell 151: 1157-1158 (2012).
-
(2012)
Cell
, vol.151
, pp. 1157-1158
-
-
Sontheimer, E.J.1
-
176
-
-
84857221494
-
Distribution of repetitive DNAs and the hybrid origin of the red vizcacha rat (Octodontidae)
-
Suárez-Villota EY, Vargas RA, Marchant CL, Torres JE, Köhler N, et al: Distribution of repetitive DNAs and the hybrid origin of the red vizcacha rat (Octodontidae). Genome 55: 105-117 (2012).
-
(2012)
Genome
, vol.55
, pp. 105-117
-
-
Suárez-Villota, E.Y.1
Vargas, R.A.2
Marchant, C.L.3
Torres, J.E.4
Köhler, N.5
-
177
-
-
84865806641
-
LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders
-
Sun C, Shepard DB, Chong RA, López Arriaza J, Hall K, et al: LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders. Genome Biol Evol 4: 168-183 (2012a).
-
(2012)
Genome Biol Evol
, vol.4
, pp. 168-183
-
-
Sun, C.1
Shepard, D.B.2
Chong, R.A.3
López Arriaza, J.4
Hall, K.5
-
179
-
-
15244354797
-
Molecular cytogenetics discards polyploidy in mammals
-
DOI 10.1016/j.ygeno.2004.12.004
-
Svartman M, Stone G, Stanyon R: Molecular cytogenetics discards polyploidy in mammals. Genomics 85: 425-430 (2005). (Pubitemid 40386471)
-
(2005)
Genomics
, vol.85
, Issue.4
, pp. 425-430
-
-
Svartman, M.1
Stone, G.2
Stanyon, R.3
-
180
-
-
0000822856
-
The genetic organization of chromosomes
-
Thomas CA: The genetic organization of chromosomes. Annu Rev Genet 5: 237-256 (1971).
-
(1971)
Annu Rev Genet
, vol.5
, pp. 237-256
-
-
Thomas, C.A.1
-
181
-
-
84862886541
-
The transposable element profile of the anolis genome
-
Tollis M, Boissinot S: The transposable element profile of the anolis genome. Mob Genet Elements 1: 107-111 (2011).
-
(2011)
Mob Genet Elements
, vol.1
, pp. 107-111
-
-
Tollis, M.1
Boissinot, S.2
-
182
-
-
0028230820
-
Hybrid dysgenesis-like phenomena in the medfly, Ceratitis capitata (Diptera, Tephritidae)
-
Torti C, Malacrida A, Yannopoulos G, Louis C, Gasperi G: Hybrid dysgenesis-like phenomena in the medfly, Ceratitis capitata (Diptera, Tephritidae). J Hered 85: 92-99 (1994). (Pubitemid 24129653)
-
(1994)
Journal of Heredity
, vol.85
, Issue.2
, pp. 92-99
-
-
Torti, C.1
Malacrida, A.R.2
Yannopoulos, G.3
Louis, C.4
Gasperi, G.5
-
183
-
-
39049191279
-
The RNA interference proteins and vasa locus are involved in the silencing of retrotransposons in the female germline of Drosophila melanogaster
-
Vagin VV, Klenov MS, Kalmykova AI, Stolyarenko AD, Kotelnikov RN, Gvozdev VA: The RNA interference proteins and vasa locus are involved in the silencing of retrotransposons in the female germline of Drosophila melanogaster. RNA Biol 1: 54-58 (2004).
-
(2004)
RNA Biol
, vol.1
, pp. 54-58
-
-
Vagin, V.V.1
Klenov, M.S.2
Kalmykova, A.I.3
Stolyarenko, A.D.4
Kotelnikov, R.N.5
Gvozdev, V.A.6
-
184
-
-
33746502166
-
A distinct small RNA pathway silences selfish genetic elements in the germline
-
DOI 10.1126/science.1129333
-
Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD: A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324 (2006). (Pubitemid 44480950)
-
(2006)
Science
, vol.313
, Issue.5785
, pp. 320-324
-
-
Vagin, V.V.1
Sigova, A.2
Li, C.3
Seitz, H.4
Gvozdev, V.5
Zamore, P.D.6
-
185
-
-
46649099448
-
The association between breeding system and transposable element dynamics in Daphnia pulex
-
Valizadeh P, Crease TJ: The association between breeding system and transposable element dynamics in Daphnia pulex. J Mol Evol 66: 643-654 (2008).
-
(2008)
J Mol Evol
, vol.66
, pp. 643-654
-
-
Valizadeh, P.1
Crease, T.J.2
-
186
-
-
65249173452
-
Genome size evolution and polyploidy in the Daphnia pulex complex (Cladocera: Daphniidae)
-
Vergilino R, Belzile C, Dufresne F: Genome size evolution and polyploidy in the Daphnia pulex complex (Cladocera: Daphniidae). Biol J Linn Soc 97: 68-79 (2009).
-
(2009)
Biol J Linn Soc
, vol.97
, pp. 68-79
-
-
Vergilino, R.1
Belzile, C.2
Dufresne, F.3
-
187
-
-
84874046729
-
Evolution of a transposon in Daphnia hybrid genomes
-
Vergilino R, Elliott TA, Desjardins-Proulx P, Crease TJ, Dufresne F: Evolution of a transposon in Daphnia hybrid genomes. Mob DNA 4: 7 (2013).
-
(2013)
Mob DNA
, vol.4
, pp. 7
-
-
Vergilino, R.1
Elliott, T.A.2
Desjardins-Proulx, P.3
Crease, T.J.4
Dufresne, F.5
-
188
-
-
33745441569
-
Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila
-
Vermaak D, Henikoff S, Malik HS: Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. PLoS Genet 1: 96-108 (2005).
-
(2005)
PLoS Genet
, vol.1
, pp. 96-108
-
-
Vermaak, D.1
Henikoff, S.2
Malik, H.S.3
-
189
-
-
0031873152
-
Factors contributing to the hybrid dysgenesis syndrome in Drosophila virilis
-
DOI 10.1017/S001667239800322X
-
Vieira J, Vieira CP, Hartl DL, Lozovskaya ER: Factors contributing to the hybrid dysgenesis syndrome in Drosophila virilis. Genet Res 71:109-117 (1998). (Pubitemid 28370497)
-
(1998)
Genetical Research
, vol.71
, Issue.2
, pp. 109-117
-
-
Vieira, J.1
Vieira, C.P.2
Hartl, D.L.3
Lozovskaya, E.R.4
-
190
-
-
23844543047
-
LTR retrotransposons and flowering plant genome size: Emergence of the increase/decrease model
-
DOI 10.1159/000084941
-
Vitte C, Panaud O: LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model. Cytogenet Genome Res 110: 91-107 (2005). (Pubitemid 41159886)
-
(2005)
Cytogenetic and Genome Research
, vol.110
, Issue.1-4
, pp. 91-107
-
-
Vitte, C.1
Panaud, O.2
-
191
-
-
80051566443
-
Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes
-
Voss SR, Kump DK, Putta S, Pauly N, Reynolds A, et al: Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes. Genome Res 21: 1306-1312 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 1306-1312
-
-
Voss, S.R.1
Kump, D.K.2
Putta, S.3
Pauly, N.4
Reynolds, A.5
-
192
-
-
33845946697
-
Tuatara (Sphenodon) genomics: BAC library construction, sequence survey, and application to the DMRT gene family
-
DOI 10.1093/jhered/esl040
-
Wang Z, Miyake T, Edwards SV, Amemiya CT: Tuatara (Sphenodon) genomics: BAC library construction, sequence survey, and application to the DMRT gene family. J Hered 97: 541-548 (2006). (Pubitemid 46033020)
-
(2006)
Journal of Heredity
, vol.97
, Issue.6
, pp. 541-548
-
-
Wang, Z.1
Miyake, T.2
Edwards, S.V.3
Amemiya, C.T.4
-
193
-
-
0035344021
-
Yesterday's polyploids and the mystery of diploidization
-
DOI 10.1038/35072009
-
Wolfe KH: Yesterday's polyploids and the mystery of diploidization. Nat Rev Genet 2: 333-341 (2001). (Pubitemid 33673071)
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.5
, pp. 333-341
-
-
Wolfe, K.H.1
-
194
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
DOI 10.1016/S0168-9525(97)01181-5, PII S0168952597011815
-
Yoder JA, Walsh CP, Bestor TH: Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 13: 335-340 (1997). (Pubitemid 27309911)
-
(1997)
Trends in Genetics
, vol.13
, Issue.8
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
195
-
-
0033397381
-
Distribution and evolution of mobile elements in the virilis species group of Drosophila
-
DOI 10.1007/s004120050396
-
Zelentsova H, Poluectova H, Mnjoian L, Lyozin G, Veleikodvorskaja V, et al: Distribution and evolution of mobile elements in the virilis species group of Drosophila. Chromosoma 108: 443-456 (1999). (Pubitemid 30028628)
-
(1999)
Chromosoma
, vol.108
, Issue.7
, pp. 443-456
-
-
Zelentsova, H.1
Poluectova, H.2
Mnjoian, L.3
Lyozin, G.4
Veleikodvorskaja, V.5
Zhivotovsky, L.6
Kidwell, M.G.7
Evgen'ev, M.B.8
|