메뉴 건너뛰기




Volumn 449, Issue 1-2, 2010, Pages 85-94

Independent and parallel lateral transfer of DNA transposons in tetrapod genomes

Author keywords

Horizontal transfer; Lateral transfer; Transposable element; Transposase; Transposon

Indexed keywords

DNA; TRANSPOSASE;

EID: 70350411861     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2009.08.017     Document Type: Article
Times cited : (52)

References (39)
  • 1
    • 21144441817 scopus 로고    scopus 로고
    • Lateral gene transfer in eukaryotes
    • Andersson J.O. Lateral gene transfer in eukaryotes. Cell. Mol. Life Sci. 62 (2005) 1182-1197
    • (2005) Cell. Mol. Life Sci. , vol.62 , pp. 1182-1197
    • Andersson, J.O.1
  • 2
    • 65349136539 scopus 로고    scopus 로고
    • New superfamilies of eukaryotic DNA transposons and their internal divisions
    • Bao W., Jurka M.G., Kapitonov V.V., and Jurka J. New superfamilies of eukaryotic DNA transposons and their internal divisions. Mol. Biol. Evol. 26 (2009) 983-993
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 983-993
    • Bao, W.1    Jurka, M.G.2    Kapitonov, V.V.3    Jurka, J.4
  • 3
    • 33646928347 scopus 로고    scopus 로고
    • A distal enhancer and an ultraconserved exon are derived from a novel retroposon
    • Bejerano G., et al. A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 441 (2006) 87-90
    • (2006) Nature , vol.441 , pp. 87-90
    • Bejerano, G.1
  • 4
    • 0037819441 scopus 로고    scopus 로고
    • Widespread horizontal transfer of mitochondrial genes in flowering plants
    • Bergthorsson U., Adams K.L., Thomason B., and Palmer J.D. Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature 424 (2003) 197-201
    • (2003) Nature , vol.424 , pp. 197-201
    • Bergthorsson, U.1    Adams, K.L.2    Thomason, B.3    Palmer, J.D.4
  • 5
    • 0035207819 scopus 로고    scopus 로고
    • Adaptive evolution in LINE-1 retrotransposons
    • Boissinot S., and Furano A.V. Adaptive evolution in LINE-1 retrotransposons. Mol. Biol. Evol. 18 (2001) 2186-2194
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2186-2194
    • Boissinot, S.1    Furano, A.V.2
  • 7
    • 0025093426 scopus 로고
    • Evidence for horizontal transmission of the P transposable element between Drosophila species
    • Daniels S.B., Peterson K.R., Strausbaugh L.D., Kidwell M.G., and Chovnick A. Evidence for horizontal transmission of the P transposable element between Drosophila species. Genetics 124 (1990) 339-355
    • (1990) Genetics , vol.124 , pp. 339-355
    • Daniels, S.B.1    Peterson, K.R.2    Strausbaugh, L.D.3    Kidwell, M.G.4    Chovnick, A.5
  • 8
    • 38149117037 scopus 로고    scopus 로고
    • Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
    • de Boer J.G., Yazawa R., Davidson W.S., and Koop B.F. Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids. BMC Genomics 8 (2007) 422
    • (2007) BMC Genomics , vol.8 , pp. 422
    • de Boer, J.G.1    Yazawa, R.2    Davidson, W.S.3    Koop, B.F.4
  • 9
    • 34447333669 scopus 로고    scopus 로고
    • Rocks and clocks: calibrating the tree of life using fossils and molecules
    • Donoghue P.C.J., and Benton M.J. Rocks and clocks: calibrating the tree of life using fossils and molecules. Trends Ecol. Evol. 22 (2007) 424-431
    • (2007) Trends Ecol. Evol. , vol.22 , pp. 424-431
    • Donoghue, P.C.J.1    Benton, M.J.2
  • 10
    • 84860513986 scopus 로고    scopus 로고
    • PILER: identification and classification of genomic repeats
    • Edgar R.C., and Myers E.W. PILER: identification and classification of genomic repeats. Bioinformatics 21 Suppl. 1 (2005) i152-i158
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Edgar, R.C.1    Myers, E.W.2
  • 11
    • 42349096534 scopus 로고    scopus 로고
    • Transposable elements and the evolution of regulatory networks
    • Feschotte C. Transposable elements and the evolution of regulatory networks. Nat. Rev., Genet. 9 (2008) 397-405
    • (2008) Nat. Rev., Genet. , vol.9 , pp. 397-405
    • Feschotte, C.1
  • 12
    • 37549029474 scopus 로고    scopus 로고
    • DNA transposons and the evolution of eukaryotic genomes
    • Feschotte C., and Pritham E.J. DNA transposons and the evolution of eukaryotic genomes. Annu. Rev. Genet. 41 (2007) 331-368
    • (2007) Annu. Rev. Genet. , vol.41 , pp. 331-368
    • Feschotte, C.1    Pritham, E.J.2
  • 13
    • 0033631415 scopus 로고    scopus 로고
    • The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons
    • Furano A.V. The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons. Prog. Nucleic Acid Res. Mol. Biol. 64 (2000) 255-294
    • (2000) Prog. Nucleic Acid Res. Mol. Biol. , vol.64 , pp. 255-294
    • Furano, A.V.1
  • 14
    • 0033017956 scopus 로고    scopus 로고
    • CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs
    • Gilbert N., and Labuda D. CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 2869-2874
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 2869-2874
    • Gilbert, N.1    Labuda, D.2
  • 15
    • 23144433822 scopus 로고    scopus 로고
    • PHYML online-a Web server for fast maximum likelihood-based phylogenetic inference
    • Guindon S., Lethiec P., Duroux P., and Gascuel O. PHYML online-a Web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 33 (2005) W557-W559
    • (2005) Nucleic Acids Res. , vol.33
    • Guindon, S.1    Lethiec, P.2    Duroux, P.3    Gascuel, O.4
  • 16
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 17
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: drivers of genome evolution
    • Kazazian H.H. Mobile elements: drivers of genome evolution. Science 303 (2004) 1626-1632
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian, H.H.1
  • 18
    • 30044433182 scopus 로고    scopus 로고
    • Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
    • Khan H., Smit A., and Boissinot S. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res. 16 (2006) 78-87
    • (2006) Genome Res. , vol.16 , pp. 78-87
    • Khan, H.1    Smit, A.2    Boissinot, S.3
  • 19
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 20
    • 0032168623 scopus 로고    scopus 로고
    • Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes
    • Kordis D., and Gubensek F. Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 10704-10709
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , pp. 10704-10709
    • Kordis, D.1    Gubensek, F.2
  • 21
    • 34147106061 scopus 로고    scopus 로고
    • Phylogenomic analysis of the L1 retrotransposons in Deuterostomia
    • Kordis D., Lovsin N., and Gubensek F. Phylogenomic analysis of the L1 retrotransposons in Deuterostomia. Syst. Biol. 55 (2006) 886-901
    • (2006) Syst. Biol. , vol.55 , pp. 886-901
    • Kordis, D.1    Lovsin, N.2    Gubensek, F.3
  • 23
    • 0037350508 scopus 로고    scopus 로고
    • Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome
    • Liu G., et al. Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome. Genome Res. 13 (2003) 358-368
    • (2003) Genome Res. , vol.13 , pp. 358-368
    • Liu, G.1
  • 24
    • 0034707216 scopus 로고    scopus 로고
    • Genomic scrap yard: how genomes utilize all that junk
    • Makalowski W. Genomic scrap yard: how genomes utilize all that junk. Gene 259 (2000) 61-67
    • (2000) Gene , vol.259 , pp. 61-67
    • Makalowski, W.1
  • 25
    • 0035500898 scopus 로고    scopus 로고
    • Transposable elements are found in a large number of human protein-coding genes
    • Nekrutenko A., and Li W.H. Transposable elements are found in a large number of human protein-coding genes. Trends Genet. 17 (2001) 619-621
    • (2001) Trends Genet. , vol.17 , pp. 619-621
    • Nekrutenko, A.1    Li, W.H.2
  • 26
    • 67749095911 scopus 로고    scopus 로고
    • The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals
    • Novick P.A., Basta H., Floumanhaft M., McClure M.A., and Boissinot S. The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals. Mol. Biol. Evol. 26 (2009) 1811-1822
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 1811-1822
    • Novick, P.A.1    Basta, H.2    Floumanhaft, M.3    McClure, M.A.4    Boissinot, S.5
  • 27
    • 55949134735 scopus 로고    scopus 로고
    • Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods
    • Pace J.K., Gilbert C., Clark M.S., and Feschotte C. Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods. Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 17023-17028
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 17023-17028
    • Pace, J.K.1    Gilbert, C.2    Clark, M.S.3    Feschotte, C.4
  • 29
    • 0038247887 scopus 로고    scopus 로고
    • Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila
    • Petrov D., Aminetzach Y.T., Davis J.C., Bensasson D., and Hirsh A.E. Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila. Mol. Biol. Evol. 20 (2003) 880-892
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 880-892
    • Petrov, D.1    Aminetzach, Y.T.2    Davis, J.C.3    Bensasson, D.4    Hirsh, A.E.5
  • 30
    • 34547505117 scopus 로고    scopus 로고
    • Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals
    • Piskurek O., and Okada N. Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 12046-12051
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 12046-12051
    • Piskurek, O.1    Okada, N.2
  • 31
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 32
    • 33847633354 scopus 로고    scopus 로고
    • Bats with hATs: evidence for recent DNA transposon activity in genus Myotis
    • Ray D.A., Pagan H.J., Thompson M.L., and Stevens R.D. Bats with hATs: evidence for recent DNA transposon activity in genus Myotis. Mol. Biol. Evol. 24 (2007) 632-639
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 632-639
    • Ray, D.A.1    Pagan, H.J.2    Thompson, M.L.3    Stevens, R.D.4
  • 33
    • 43149103661 scopus 로고    scopus 로고
    • Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus
    • Ray D.A., et al. Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus. Genome Res. 18 (2008) 717-728
    • (2008) Genome Res. , vol.18 , pp. 717-728
    • Ray, D.A.1
  • 34
    • 0029099904 scopus 로고
    • Recent horizontal transfer of a mariner transposable element among and between Diptera and Neuroptera
    • Robertson H.M., and Lampe D.J. Recent horizontal transfer of a mariner transposable element among and between Diptera and Neuroptera. Mol. Biol. Evol. 12 (1995) 850-862
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 850-862
    • Robertson, H.M.1    Lampe, D.J.2
  • 35
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 36
    • 0742323538 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
    • Timmis J.N., Ayliffe M.A., Huang C.Y., and Martin W. Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat. Rev., Genet. 5 (2004) 123-135
    • (2004) Nat. Rev., Genet. , vol.5 , pp. 123-135
    • Timmis, J.N.1    Ayliffe, M.A.2    Huang, C.Y.3    Martin, W.4
  • 37
    • 0141591517 scopus 로고    scopus 로고
    • Horizontal gene transfer from flowering plants to Gnetum
    • Won H., and Renner S.S. Horizontal gene transfer from flowering plants to Gnetum. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 10824-10829
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 10824-10829
    • Won, H.1    Renner, S.S.2
  • 39
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang Z., and Nielsen R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17 (2000) 32-43
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.