The genetic legacy of polyploid Bolivian Daphnia: The tropical Andes as a source for the North and South American D. pulicaria complex

Molecular Ecology

Volumn 17, Issue 7, 2008, Pages 1789-1800

  Mergeay, Joachim ^a   Aguilera, Ximena ^b   Declerck, Steven ^a   Petrusek, Adam ^c   Huyse, Tine ^a   De Meester, Luc ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b UNIVERSIDAD MAYOR DE SAN SIMÓN   (Bolivia)

^c CHARLES UNIVERSITY   (Czech Republic)

Author keywords

Andes; Cladocera; Daphnia pulex; Phylogeography; Polyploidy; South America

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ALTITUDE; ANIMAL; ARTICLE; BOLIVIA; DAPHNIA; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; NORTH AMERICA; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYPLOIDY;

ALTITUDE; ANIMALS; BASE SEQUENCE; BOLIVIA; DAPHNIA; DNA, MITOCHONDRIAL; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; NORTH AMERICA; PHYLOGENY; POLYPLOIDY; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

CLADOCERA; DAPHNIA; DAPHNIA PULEX; DAPHNIA PULICARIA; SIPHONAPTERA (FLEAS);

EID: 41149128330     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2007.03679.x     Document Type: Article

References (47)

1. Adamowicz SJ, Gregory TR, Marinone MC, Hebert PDN (2002) New insights into the distribution of polyploid Daphnia: the Holarctic revisited and Argentina explored. Molecular Ecology, 11, 1209 1217.
2. Adamowicz SJ, Hebert PDN, Marinone MC (2004) Species diversity and endemism in the Daphnia of Argentina: a genetic investigation. Zoological Journal of the Linnean Society, 140, 171 205.
3. Aguilera X, Declerck S, De Meester L, Maldonado M, Ollevier F (2006) Tropical high Andes lakes: a limnological survey and an assessment of exotic rainbow trout (Oncorhynchus mykiss). Limnologica, 36, 258 268.
4. Aguilera X, Mergeay J, Wollebrants A, Declerck S, De Meester L (2007) Asexuality and polyploidy in Daphnia from the tropical Andes. Limnology and Oceanography, 52, 2079 2088.
5. Alonso M (1996) Crustacea, Branchiopoda, Anomopoda. Museum Nacional de Ciencias Naturales, Madrid.
6. Beaton MJ, Hebert PDN (1988) Geographical parthenogenesis and polypoidy in Daphnia pulex. American Naturalist, 132, 837 845.
7. Brooks JL (1957) The Systematics of North American Daphnia. Connecticut Academy of Arts and Sciences, New Haven, Connecticut.
8. Bruvo R, Michiels NK, D'Souza TG, Schulenburg H (2004) A simple method for the calculation of microsatellite genotype distances irrespective of ploidy level. Molecular Ecology, 13, 2101 2106.
9. Colbourne JK, Crease TJ, Weider LJ, Hebert PDN, Dufresne F, Hobæk A (1998) Phylogenetics and evolution of a circumarctic species complex (Cladocera: Daphnia pulex). Biological Journal of the Linnean Society, 65, 347 365.
10. Colbourne JK, Robison B, Bogart K, Lynch M (2004) Five hundred and twenty-eight microsatellite markers for ecological genomic investigations using Daphnia. Molecular Ecology Notes, 4, 485 490.
11. Dufresne F, Hebert PDN (1994) Hybridization and origins of polyploidy. Proceedings of the Royal Society B: Biological Sciences, 258, 141 146.
12. Dufresne F, Hebert PDN (1997) Pleistocene glaciations and polyphyletic origins of polyploidy in an arctic cladoceran. Proceedings of the Royal Society B: Biological Sciences, 264, 201 206.
13. Dufresne F, Hebert PDN (1998) Temperature-related differences in life-history characteristics between diploid and polyploid clones of the Daphnia pulex complex. Ecoscience, 5, 433 437.
14. Excoffier L (1993) Minimum Spanning Network. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
15. Farris JS, Källersjö M, Kluge AG, Bult C (1995) Constructing a significance test for incongruence. Systematic Biology, 44, 570 572.
16. Fjeldså J (1994) Geographical patterns for relict and young species of birds in Africa and South America and implications for conservation priorities. Biodiversity and Conservation, 3, 207 226.
17. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294 299.
18. Garreaud R, Vuille M, Clement AC (2003) The climate of the Altiplano: observed current conditions and mechanisms of past changes. Palaeogeography Palaeoclimatology Palaeoecology, 194, 5 22.
19. Hansen BCS, Wright HE Jr., Bradbury JP (1984) Pollen studies in the Junin area, central Peruvian Andes. Geological Society of America Bulletin, 95, 1454 1465.
20. Harding JP (1955) The Percy Sladen Trust Expedition to Lake Titicaca in 1937, XIX Crustacea: Cladocera. Transactions of the Linnean Society of London, 1, 329 354.
21. Haubrich K, Schmitt T (2007) Cryptic differentiation in alpine-endemic, high-altitude butterflies reveals down-slope glacial refugia. Molecular Ecology, 16, 3643 3658.
22. Hebert PDN (1995) The Daphnia of North America: an illustrated fauna (on CD-ROM). CyberNatural Software, Guelph, Ontario, Canada.
23. Hebert PDN, Finston TL (2001) Macrogeographic patterns of breeding system diversity in the Daphnia pulex group from the United States and Mexico. Heredity, 87, 153 161.
24. Hewitt GM (2004) Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, 183 195.
25. Hooghiemstra H (1989) Quaternary and Upper Pliocene glaciations and forest development in the tropical Andes: evidence from a long high resolution pollen record from the sedimentary plain of Bogota, Colombia. Palaeogeography, Palaeoclimatology, Palaeoecology, 72, 11 16.
26. Huelsenbeck JP, Crandall KA (1997) Phylogeny estimation and hypothesis testing using maximum likelihood. Annual Review of Ecology and Systematics, 28, 437 466.
27. Hutchinson GE (1957) A Treatise on Limnology. Volume 1: Lake Origins, Physics, and Chemistry. Wiley & Sons, New York.
28. Innes DJ, Hebert PDN (1988) The origin and genetic basis of obligate parthenogenesis in Daphnia pulex. Evolution, 42, 1024 1035.
29. Kumar S, Tamura K, Nei M (2004) mega 4: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150 163.
30. Marková S, Dufresne F, Rees DJ, Černý M, Kotlík P (2007) Cryptic intercontinental colonization in water fleas Daphnia pulicaria inferred from phylogenetic analysis of mitochondrial DNA variation. Molecular Phylogenetics and Evolution, 44, 42 52.
31. Mergeay J, Verschuren D, De Meester L (2005) Cryptic invasion and dispersal of an American Daphnia in East Africa. Limnology and Oceanography, 50, 1278 1283.
32. Mergeay J, Verschuren D, De Meester L (2006) Invasion of an asexual American water flea clone throughout Africa, and rapid displacement of a native sibling species. Proceedings of the Royal Society B: Biological Sciences, 273, 2839 2844.
33. Nylander JAA (2004) mrmodeltest. Distributed by the Author. Uppsala, Evolutionary Biology Centre, Uppsala, Sweden.
34. Otto SP, Whitton J (2000) Polyploid incidence and evolution. Annual Review of Genetics, 34, 401 437.
35. Posada D, Crandall KA (1998) modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
36. Ray N, Adams JM (2001) A GIS-based vegetation map of the world at the last glacial maximum (25 000-15 000 bp). In : Internet Archaeology 11, http://intarch.ac.uk/journal/issue11/rayadams_toc.html.
37. Ronquist F, Huelsenbeck JP (2003) mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 1574.
38. Schmidt HA, Strimmer K, Vingron M, Von Haeseler A (2002) tree-puzzle: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics, 18, 502 504.
39. Strimmer K, Rambaut A (2002) Inferring confidence sets of possibly misspecified gene trees. Proceedings of the Royal Society B: Biological Sciences, 269, 137 142.
40. Strimmer K, von Haeseler A (1997) Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proceedings of the National Academy of Sciences, USA, 94, 6815 6819.
41. Swofford DL (1998) paup*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer Associates, Sunderland, Massachusetts.
42. Taylor DJ, Hebert PDN, Colbourne JK (1996) Phylogenetics and evolution of the Daphnia longispina group (Crustacea) based on 12S rDNA sequence and allozyme variation. Molecular Phylogenetics and Evolution, 5, 495 510.
43. Tosi J (1960) Zonas de Vida Natural en el Peru. Organizacion de Estados Americanos, Lima, Peru.
44. Weider LJ, Hobæk A (2003) Glacial refugia, haplotype distributions, and clonal richness of the Daphnia pulex complex in Arctic Canada. Molecular Ecology, 12, 463 473.
45. Weider LJ, Hobæk A, Hebert PDN, Crease TJ (1999a) Holarctic phylogeography of an asexual species complex - II. Allozymic variation and clonal structure in Arctic Daphnia. Molecular Ecology, 8, 1 13.
46. Weider LJ, Hobæk A, Colbourne JK, Crease TJ, Dufresne F, Hebert PDN (1999b) Holarctic phylogeography of an asexual species complex I. Mitochondrial DNA variation in arctic Daphnia. Evolution, 53, 777 792.
47. Wiens JJ (2005) Can incomplete taxa rescue phylogenetic analyses from long-branch attraction? Systematic Biology, 54, 731 742.