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Volumn 50, Issue 3, 2012, Pages 260-270

Characterization of small RNAs in Xenopus tropicalis gastrulae

Author keywords

Early development process; Gastrulation process; Genomics process

Indexed keywords

CHORDIN; DELTA SARCOGLYCAN; GOOSECOID PROTEIN; MICRORNA; PIWI INTERACTING RNA; SMALL INTERFERING RNA;

EID: 84857995398     PISSN: 1526954X     EISSN: 1526968X     Source Type: Journal    
DOI: 10.1002/dvg.22012     Document Type: Article
Times cited : (11)

References (38)
  • 2
    • 0035838369 scopus 로고    scopus 로고
    • Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
    • Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, Gvozdev VA. 2001. Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol 11: 1017-1027.
    • (2001) Curr Biol , vol.11 , pp. 1017-1027
    • Aravin, A.A.1    Naumova, N.M.2    Tulin, A.V.3    Vagin, V.V.4    Rozovsky, Y.M.5    Gvozdev, V.A.6
  • 3
    • 70349633516 scopus 로고    scopus 로고
    • Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis
    • Armisen J, Gilchrist MJ, Wilczynska A, Standart N, Miska EA. 2009. Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis. Genome Res 19: 1766-1775.
    • (2009) Genome Res , vol.19 , pp. 1766-1775
    • Armisen, J.1    Gilchrist, M.J.2    Wilczynska, A.3    Standart, N.4    Miska, E.A.5
  • 4
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.J.7
  • 5
    • 44349174824 scopus 로고    scopus 로고
    • Endogenous RNA interference provides a somatic defense against Drosophila transposons
    • Chung WJ, Okamura K, Martin R, Lai EC. 2008. Endogenous RNA interference provides a somatic defense against Drosophila transposons. Curr Biol 18: 795-802.
    • (2008) Curr Biol , vol.18 , pp. 795-802
    • Chung, W.J.1    Okamura, K.2    Martin, R.3    Lai, E.C.4
  • 6
    • 0034574602 scopus 로고    scopus 로고
    • The establishment of Spemann's organizer and patterning of the vertebrate embryo
    • De Robertis EM, Larrain J, Oelgeschlager M, Wessely O. 2000. The establishment of Spemann's organizer and patterning of the vertebrate embryo. Nat Rev Genet 1: 171-181.
    • (2000) Nat Rev Genet , vol.1 , pp. 171-181
    • De Robertis, E.M.1    Larrain, J.2    Oelgeschlager, M.3    Wessely, O.4
  • 7
    • 62349108596 scopus 로고    scopus 로고
    • Identification of novel transcripts with differential dorso-ventral expression in Xenopus gastrula using serial analysis of gene expression
    • Faunes F, Sanchez N, Castellanos J, Vergara IA, Melo F, Larrain J. 2009. Identification of novel transcripts with differential dorso-ventral expression in Xenopus gastrula using serial analysis of gene expression. Genome Biol 10: R15.
    • (2009) Genome Biol , vol.10
    • Faunes, F.1    Sanchez, N.2    Castellanos, J.3    Vergara, I.A.4    Melo, F.5    Larrain, J.6
  • 10
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: An expanding universe
    • Ghildiyal M, Zamore PD. 2009. Small silencing RNAs: An expanding universe. Nat Rev Genet 10: 94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 13
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian Piwi proteins
    • Girard A, Sachidanandam R, Hannon GJ, Carmell MA. 2006. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442: 199-202.
    • (2006) Nature , vol.442 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4
  • 14
    • 33749059160 scopus 로고    scopus 로고
    • miRBase: The microRNA sequence database
    • Griffiths-Jones S. 2006. miRBase: The microRNA sequence database. Methods Mol Biol 342: 129-138.
    • (2006) Methods Mol Biol , vol.342 , pp. 129-138
    • Griffiths-Jones, S.1
  • 17
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • Jurka J. 2000. Repbase update: A database and an electronic journal of repetitive elements. Trends Genet 16: 418-420.
    • (2000) Trends Genet , vol.16 , pp. 418-420
    • Jurka, J.1
  • 18
    • 33746636025 scopus 로고    scopus 로고
    • Small RNAs just got bigger: Piwi-interacting RNAs (piRNAs) in mammalian testes
    • Kim VN. 2006. Small RNAs just got bigger: Piwi-interacting RNAs (piRNAs) in mammalian testes. Genes Dev 20: 1993-1997.
    • (2006) Genes Dev , vol.20 , pp. 1993-1997
    • Kim, V.N.1
  • 20
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 21
    • 70350568326 scopus 로고    scopus 로고
    • Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi
    • Lau NC, Ohsumi T, Borowsky M, Kingston RE, Blower MD. 2009. Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi. Embo J 28: 2945-2958.
    • (2009) Embo J , vol.28 , pp. 2945-2958
    • Lau, N.C.1    Ohsumi, T.2    Borowsky, M.3    Kingston, R.E.4    Blower, M.D.5
  • 22
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee RC, Feinbaum RL, Ambros V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 24
    • 60149098474 scopus 로고    scopus 로고
    • Small RNAs as guardians of the genome
    • Malone CD, Hannon GJ. 2009. Small RNAs as guardians of the genome. Cell 136: 656-668.
    • (2009) Cell , vol.136 , pp. 656-668
    • Malone, C.D.1    Hannon, G.J.2
  • 29
  • 33
    • 46949084254 scopus 로고    scopus 로고
    • Expression of microRNAs during embryonic development of Xenopus tropicalis
    • Walker JC, Harland RM. 2008. Expression of microRNAs during embryonic development of Xenopus tropicalis. Gene Expr Patterns 8: 452-456.
    • (2008) Gene Expr Patterns , vol.8 , pp. 452-456
    • Walker, J.C.1    Harland, R.M.2
  • 34
    • 84934442340 scopus 로고    scopus 로고
    • Identification and expression analysis of small RNAs during development
    • Watanabe T, Imai H, Minami N. 2008a. Identification and expression analysis of small RNAs during development. Methods Mol Biol 442: 173-185.
    • (2008) Methods Mol Biol , vol.442 , pp. 173-185
    • Watanabe, T.1    Imai, H.2    Minami, N.3
  • 37
    • 0027730383 scopus 로고
    • Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
    • Wightman B, Ha I, Ruvkun G. 1993. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75: 855-862.
    • (1993) Cell , vol.75 , pp. 855-862
    • Wightman, B.1    Ha, I.2    Ruvkun, G.3
  • 38
    • 58249116116 scopus 로고    scopus 로고
    • Two Piwi proteins, Xiwi and Xili, are expressed in the Xenopus female germline
    • Wilczynska A, Minshall N, Armisen J, Miska EA, Standart N. 2009. Two Piwi proteins, Xiwi and Xili, are expressed in the Xenopus female germline. Rna 15: 337-345.
    • (2009) Rna , vol.15 , pp. 337-345
    • Wilczynska, A.1    Minshall, N.2    Armisen, J.3    Miska, E.A.4    Standart, N.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.