Molecular cytogenetics and allotetraploidy in the red vizcacha rat, Tympanoctomys barrerae (Rodentia, Octodontidae)

Genomics

Volumn 88, Issue 2, 2006, Pages 214-221

  Gallardo, M H ^a   Gonzalez C A ^a   Cebrian I ^b  

^a UNIVERSIDAD AUSTRAL DE CHILE   (Chile)

^b UNIVERSIDAD NACIONAL DE MISIONES   (Argentina)

Author keywords

Allotetraploidy; NORs; Nucleolar dominance; Red vizcacha rat; Tympanoctomys barrerae

Indexed keywords

RIBOSOME DNA; TRANSCRIPTION FACTOR MSX2;

ANIMAL CELL; ARTICLE; CHROMOSOME BANDING PATTERN; CHROMOSOME NOR; CHROMOSOME PAIRING; CONTROLLED STUDY; CYTOGENETICS; DIPLOIDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE DUPLICATION; GENE LOCUS; GENE SILENCING; HOX GENE; MALE; MEIOSIS; NONHUMAN; PRIORITY JOURNAL; RAT; SYNAPTONEMAL COMPLEX; TETRAPLOIDY;

ANIMALS; CELLS, CULTURED; CHROMOSOME SEGREGATION; DNA, RIBOSOMAL; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; MALE; POLYPLOIDY; REPETITIVE SEQUENCES, NUCLEIC ACID; RODENTIA;

MAMMALIA; OCTODONTIDAE; RODENTIA; TYMPANOCTOMYS BARRERAE;

EID: 33745954428     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2006.02.010     Document Type: Article

References (68)

1. Stebbins G.L. Chromosomal Evolution in Higher Plants (1971), Arnold, London
2. Orr H.A. "Why polyploidy is rarer in animals than in plants" revisited. Am. Nat. 136 (1990) 759-770
3. Otto S.P., and Whitton J. Polyploid incidence and evolution. Annu. Rev. Genet. 34 (2000) 401-437
4. Carr D.H. Chromosome studies in selected spontaneous abortions: polyploidy in man. J. Med. Genet. 8 (1971) 164-174
5. Guc-Scekic M., Milasin J., Stevanovic M., Stojanov L.J., and Djordjevic M. Tetraploidy in a 26-month-old girl (cytogenetic and molecular studies). Clin. Genet. 61 (2002) 62-65
6. Gallardo M.H., Bickham J.W., Honeycutt R.L., Ojeda R.A., and Köhler N. Discovery of tetraploidy in a mammal. Nature 401 (1999) 341
7. Gallardo M.H., et al. Whole-genome duplications in South American desert rodents (Octodontidae). Biol. J. Linn. Soc. 82 (2004) 443-451
8. M.A. Mares, J.K. Braun, R.M. Bárquez, M.M. Díaz, Two new genera and species of halophytic desert mammals from isolated salt flats in Argentina. Occas. Papers, Mus. Texas Tech. Univ., 203 (2000) 1-27.
9. Gallardo M.H. Karyotypic evolution in octodontid rodents based on C-band analysis. J. Mamm. 73 (1992) 89-98
10. Spotorno A.E., et al. Chromosome divergence of Octodon lunatus and Abrocoma bennetti and the origins of Octodontoidea (Rodentia, Hystricognathi). Rev. Chil. Hist. Nat. 68 (1995) 227-239
11. Galitsky T., Saldanha A.J., Styles C.A., Lander E.S., and Fink G.R. Ploidy regulation of gene expression. Science 285 (1999) 251-254
12. Gallardo M.H., et al. Gradual and quantum genome size shifts in the hystricognath rodents. J. Evol. Biol. 16 (2003) 163-169
13. Gallardo M.H., Garrido O., Bahamonde R., and González M. Gametogenesis and nucleotypic effects in the tetraploid red vizcacha rat, Tympanoctomys barrerae (Rodentia, Octodontidae). Biol. Res. 37 (2004) 767-775
14. Pontes O., et al. Natural variation in nucleolar dominance reveals the relationship between nucleolus organizer chromatin topology and rRNA gene transcription in Arabidopsis. Proc. Natl. Acad. Sci. USA 100 (2003) 11418-11423
15. Svartman M., Stone G., and Stanyon R. Molecular cytogenetics discards polyploidy in mammals. Genomics 85 (2005) 425-430
16. Grummt I., and Pikaard C.S. Epigenetic silencing of RNA polymerase I transcription. Nat. Rev. Mol. Cell Biol. 4 (2003) 641-649
17. Matyasek R., Lim K.Y., Kovarik A., and Leitch A. Ribosomal DNA evolution and gene conversion in Nicotiana rustica. Heredity 91 (2003) 268-275
18. Marasek A., Hasterok R., Wiejacha K., and Orlikowska T. Determination by GISH and FISH of hybrid status in Lilium. Hereditas 140 (2004) 1-7
19. Pikaard C.S. Nucleolar dominance: uniparental silencing on a multi-megabase scale in genetic hybrids. Plant Mol. Biol. 43 (2000) 163-177
20. Contreras L., Torres-Mura J., and Spotorno A. The largest known chromosome number for a mammal in a South American desert rodent. Experientia 46 (1990) 506-508
21. Taketa S., Harrison G.E., and Heslop-Harrison J.S. Comparative physical mapping of the 5S rDNAs and 18S-25S rDNA in nine wild Hordeum species and cytotypes. Theor. Appl. Genet. 98 (1999) 1-9
22. Hasterok R., Jenkins G., Langdon T., and Jones R.N. Ribosomal DNA is an effective marker of Brassica chromosomes. Hereditas 103 (2001) 486-490
23. Pedrosa A., Schweizer D., and Guerra M. Cytological heterozygosity and the hybrid origin of sweet orange. (Citrus sinensis (L.) Osbeck). Theor. Appl. Genet. 100 (2000) 361-367
24. Chase M.W., et al. Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solenaceae). Ann. Bot. 92 (2003) 107-127
25. Zavala Guillén A.K., Hirai Y., Tanoue T., and Hirai H. Transcriptional repression mechanisms of nucleolus organizer regions (NORs) in humans and chimpanzees. Chromosome Res. 12 (2004) 225-237
26. Lawrence R.J., et al. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Mol. Cell 13 (2004) 599-609
27. Pontes O., et al. Chromosomal locus rearrangements are rapid response to formation of the allotetraploid Arabidopsis suecica genome. Proc. Natl. Acad. Sci. USA 101 (2004) 18240-18245
28. Madlung A., et al. Genomic change in synthetic Arabidopsis polyploids. Plant J. 41 (2005) 221-230
29. Chen Z.J., and Pikaard C.S. Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. Genes Dev. 11 (1997) 2124-2136
30. Joly S., Rauscher J.T., Sherman-Broyles S.L., Brown A.H.D., and Doyle J.J. Evolutionary dynamics and preferential expression of homeologous 18S-5.8-26S, nuclear ribosomal genes in natural and artificial Glycine allopolyploids. Mol. Biol. Evol. 21 (2004) 1409-1421
31. Wendel J.F. Genome evolution in polyploids. Plant Mol. Biol. 42 (2000) 225-242
32. Neves N., Silva M., Heslop-Harrison J.S., and Viegas W. Nucleolar dominance in Triticales: control by unlinked genes. Chromosome Res. 5 (1997) 125-131
33. Kopp E., Mayr B., and Schleger W. Species-specific non-expression in ribosomal RNA genes in a mammalian hybrid, the mule. Chromosoma 94 (1986) 346-352
34. Walker L.I., Rojas M., Flores S., Spotorno A., and Manríquez G. Genomic compatibility between two phyllotine rodent species evaluated through their hybrids. Hereditas 131 (1999) 227-238
35. Walker L.I., Flores S.V., and Spotorno A. Nucleolar dominance in phyllotine rodent hybrids. Cytogenet. Cell Genet. 81 (1998) 134
36. Durica D.S., and Krider H.M. Studies on the ribosomal RNA cistrons in interspecific Drosophila hybrids: I. Nucleolar dominance. Dev. Biol. 59 (1977) 62-74
37. Pikaard C.S. Ribosomal gene promoter domains can function as artificial enhancer of RNA polymerase I transcription, supporting a promoter origin for natural enhancers in Xenopus. Proc. Natl. Acad. Sci. USA 91 (1994) 464-468
38. Siroki J., Hodurkova J., Negrutiu I., and Vyskot B. Functional and structural chromosome analyses in autotetraploid Silene latifolia. Ann. Bot. 84 (1999) 633-638
39. Ruiz I.R.G., Bonaldo M.F., and Beçak W. In situ localization of ribosomal genes in a natural triploid of Odontophrynus. J. Hered. 71 (1980) 55-57
40. Beçak M.L., and Kobachi L.S. Evolution by polyploidy and gene regulation in Anura. Genet. Mol. Res. 3 (2004) 195-212
41. Comai L. The advantages and disadvantages of being polyploid. Nat. Rev. Genet. 6 (2005) 836-846
42. Wolfe K.H. Yesterday's polyploids and the mystery of diploidization. Nat. Genet. 2 (2001) 333-341
43. Soltis P.S., and Soltis D.E. The role of genetic and genomic attributes in the success of polyploids. Proc. Natl. Acad. Sci. USA 97 (2000) 7051-7057
44. Ma X.F., and Gustavson J.P. Genome evolution of allopolyploids: a process of cytological and genetic diploidization. Cytogenet. Genome Res. 109 (2004) 236-249
45. White S., and Doebley J. Of genes and genomes and the origin of maize. Trends Genet. 14 (1998) 326-332
46. Poggio L., González G., Confalonieri V., Comas C., and Naranjo C.A. The genome organization and diversification of maize and its allied species revisited: evidence from classical and FISH-GISH cytogenetic analysis. Cytogenet. Genome Res. 109 (2005) 259-267
47. Han F.B., Liu G., Fedak G., and Liu Z. Genomic constitution and variation in five partial amphiploids of wheat Thinopyrum intermedium as revealed by GISH, multicolor GISH and seed storage protein analysis. Theor. Appl. Genet. 109 (2004) 1070-1076
48. Moore G. Meiosis in allopolyploids-The importance of "Teflon" chromosomes. Trends Genet. 18 (2002) 456-463
49. Perrie L.R., Brownsey P.J., Lockhart P.J., and Large M.F. Evidence for an allotetraploid complex in New Zealand Polystichum (Dryopteridaceae). N. Z. J. Bot. 41 (2003) 189-215
50. Park G.-M., Yong T.-S., and K.-I. Im J.B. Chromosomes of Pisidium coreanum (Bivalvia: Veneroida: Corbiculoidea: Pisidiidae), a freshwater clam. Malacologia 44 (2002) 165-168
51. Herrero A., Pajarón S., and Prada C. Isozyme variation and genetic relationships among taxa in the Asplenium obovatum group (Aspleniaceae, Pterydophyta). Am. J. Bot. 88 (2001) 2040-2050
52. W. Bennert, M. Lubienski, S. Körner, M. Steinberg, Triploidy in Equisetum subgenus Hippochaete (Equisetaceae, Pteridophyta), Ann. Bot. 95: 807-815
53. Köhler N., Gallardo M.H., Contreras L.C., and Torres-Mura J.C. Allozymic variation and systematic relationships of the Octodontidae and allied taxa (Mammalia, Rodentia). J. Zool. 252 (2000) 243-250
54. Baverstock P.R., Gelder M., and Jahnke A. Cytogenetic studies of the Australian rodent, Uromys caudimaculatus, a species showing extensive heterochromatin variation. Chromosoma 84 (1982) 517-533
55. Baverstock P.R., Watts C.H.S., Adams M., and Gelder M. Chromosomal and electrophoretic studies of Australian Melomys (Rodentia: Muridae). Aust. J. Zool. 28 (1980) 553-574
56. Honeycutt R.L., Rowe D.L., and Gallardo M.H. Molecular systematics of the South American caviomorph rodents: relationships among species and genera in the family Octodontidae. Mol. Phylogenet. Evol. 26 (2003) 476-489
57. Patton J.I., and Sherwood S.W. Genome evolution in pocket gophers (genus Thomomys): I. heterochromatin variation and speciation potential. Chromosoma (Berlin) 85 (1982) 163-177
58. Fernández R. El cariotipo del Octodon degus (Rodentia-Octodontidae). Arch. Biol. Med. Exp. 5 (1968) 33-37
59. Gallardo M.H., et al. Morphological diversity in the sperms of caviomorph rodents. Mastozool. Neotropical 9 (2002) 159-170
60. Beatty R.A., and Fechheimer S. Diploid spermatozoa in rabbit semen and their experimental separation from haploid spermatozoa. Biol. Reprod. 7 (1972) 267-270
61. Ferrari M.R., Spirito S.E., Giuliano S.M., and Fernández H.A. Chromatin cytophotometric analysis of abnormal bovine spermatozoa. Andrologia 30 (1998) 85-89
62. Flemming A.J., She Z.Z., Cunha A., Emmons S.W., and Leroi A.M. Somatic polyploidization and cellular proliferation drive body size evolution in nematodes. Proc. Natl. Acad. Sci. USA 97 (2000) 5285-5290
63. Stoker H., and Hafen E. Genetic control of cell size. Curr. Opin. Genet. Dev. 10 (2000) 529-535
64. Verma R.S., and Babu A. Human Chromosomes, Principles and Techniques (1995), McGraw-Hill, New York
65. Schwarzacher T., and Heslop-Harrison P. Practical in Situ Hybridization. BIOS Scientific Publishers Limited (2000) Oxford
66. Lanzone C., Bidau C.J., Giménez M.D., and Santos J.L. Synaptic behaviour and morphological modifications of the X and Y chromosomes during pachytene in three species of Ctenomys (Rodentia, Caviomorpha, Ctenomyidae). Genome 45 (2002) 1110-1115
67. Greenbaum I.F., Hale D.W., and Fuxa K.P. The mechanism of autosomal synapsis and the substaging of zygonema and pachynema from mouse espermatocytes. Chromosoma 93 (1986) 203-212
68. Giménez M.D., Mirol P.M., Bidau C.J., and Searle J.B. Molecular analysis of populations of Ctenomys (Caviomorpha, Rodentia) with high karyotypic variability. Cytogenet. Genome Res. 96 (2002) 130-136