SCOPUS 정보 검색 플랫폼

Volumn 34, Issue 22, 2013, Pages 1925-1936

A homology/ab initio hybrid algorithm for sampling near-native protein conformations

(2) Dhingra, Priyanka a Jayaram, Bhyravabhotla a

a INDIAN INSTITUTE OF TECHNOLOGY DELHI (India)

Author keywords

ab initio modeling; fold recognition; homology modeling; loop modeling; protein folding; protein tertiary structure prediction

Indexed keywords

AB INITIO MODELING; FOLD RECOGNITION; HOMOLOGY MODELING; LOOP MODELING; PROTEIN TERTIARY STRUCTURE PREDICTION;

ALGORITHMS; PROTEIN FOLDING;

PROTEINS;

PROTEIN;

AB INITIO CALCULATION; ALGORITHM; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; FOLD RECOGNITION; HOMOLOGY MODELING; LOOP MODELING; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN TERTIARY STRUCTURE PREDICTION; QUANTUM THEORY;

AB INITIO MODELING; FOLD RECOGNITION; HOMOLOGY MODELING; LOOP MODELING; PROTEIN FOLDING; PROTEIN TERTIARY STRUCTURE PREDICTION;

ALGORITHMS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEINS; QUANTUM THEORY;

EID: 84880132860 PISSN: 01928651 EISSN: 1096987X Source Type: Journal
DOI: 10.1002/jcc.23339 Document Type: Article

Times cited : (14)

References (106)

1
- 76549238253
- L. Pauling, R. B. Corey, Proc. Natl. Acad. Sci. USA 1951, 37, 251.
- (1951) Proc. Natl. Acad. Sci. USA , vol.37 , pp. 251
- Pauling, L.¹ Corey, R.B.²

2
- 76549252207
- L. Pauling, R. B. Corey, H. R. Branson, Proc. Natl. Acad. Sci. USA 1951, 37, 205.
- (1951) Proc. Natl. Acad. Sci. USA , vol.37 , pp. 205
- Pauling, L.¹ Corey, R.B.² Branson, H.R.³

3
- 2442697595
- J. B. Holmes, J. Tsai, Protein Sci. 2004, 13, 1636.
- (2004) Protein Sci. , vol.13 , pp. 1636
- Holmes, J.B.¹ Tsai, J.²

4
- 0033954256
- H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, P. E. Bourne, Nucleic Acids Res. 2000, 28, 235.
- (2000) Nucleic Acids Res. , vol.28 , pp. 235
- Berman, H.M.¹ Westbrook, J.² Feng, Z.³ Gilliland, G.⁴ Bhat, T.N.⁵ Weissig, H.⁶ Shindyalov, I.N.⁷ Bourne, P.E.⁸

5
- 72549092325
- K. Arnold, L. Bordoli, J. Kopp, T. Schwede, Bioinformatics 2006, 22, 95.
- (2006) Bioinformatics , vol.22 , pp. 95
- Arnold, K.¹ Bordoli, L.² Kopp, J.³ Schwede, T.⁴

6
- 77954257799
- H. Ashkenazy, E. Erez, E. Martz, T. Pupko, N. Ben-Tal, Nucleic Acids Res. 2010, 38, W529.
- (2010) Nucleic Acids Res. , vol.38
- Ashkenazy, H.¹ Erez, E.² Martz, E.³ Pupko, T.⁴ Ben-Tal, N.⁵

7
- 77954296666
- M. Goujon, H. McWilliam, W. Li, F. Valentin, S. Squizzato, J. Paern, R. Lopez, Nucleic Acids Res. 2010, 38S, W695.
- (2010) Nucleic Acids Res. , vol.38 S
- Goujon, M.¹ McWilliam, H.² Li, W.³ Valentin, F.⁴ Squizzato, S.⁵ Paern, J.⁶ Lopez, R.⁷

8
- 0032461411
- A. Janardhan, S. Vajda, Protein Sci. 1998, 7, 1772.
- (1998) Protein Sci. , vol.7 , pp. 1772
- Janardhan, A.¹ Vajda, S.²

9
- 0141738776
- J. C. Prasad, S. R. Comeau, S. Vajda, C. J. Camacho, Bioinformatics 2003, 19, 1682.
- (2003) Bioinformatics , vol.19 , pp. 1682
- Prasad, J.C.¹ Comeau, S.R.² Vajda, S.³ Camacho, C.J.⁴

10
- 3142758686
- J. Kopp, T. Schwede, Pharmacogenomics 2004, 5, 405.
- (2004) Pharmacogenomics , vol.5 , pp. 405
- Kopp, J.¹ Schwede, T.²

11
- 61449229355
- L. Bordoli, F. Kiefer, K. Arnold, P. Benkert, J. Battey, T. Schwede, Nat. Protoc. 2009, 4, 1.
- (2009) Nat. Protoc. , vol.4 , pp. 1
- Bordoli, L.¹ Kiefer, F.² Arnold, K.³ Benkert, P.⁴ Battey, J.⁵ Schwede, T.⁶

12
- 77954249072
- R. Norel, D. Petrey, B. Honig, Nucleic Acid Res. 2010, 38, W550.
- (2010) Nucleic Acid Res. , vol.38
- Norel, R.¹ Petrey, D.² Honig, B.³

13
- 84934439235
- M. Punta, B. Rost, Methods Mol. Biol. 2008, 458, 203.
- (2008) Methods Mol. Biol. , vol.458 , pp. 203
- Punta, M.¹ Rost, B.²

14
- 77949446197
- M. Margelevicius, C. Venclovas, BMC Bioinform. 2010, 11, 89.
- (2010) BMC Bioinform. , vol.11 , pp. 89
- Margelevicius, M.¹ Venclovas, C.²

15
- 77955060768
- M. Margelevicius, M. Laganeckas, C. Venclovas, Bioinformatics 2010, 26, 1905.
- (2010) Bioinformatics , vol.26 , pp. 1905
- Margelevicius, M.¹ Laganeckas, M.² Venclovas, C.³

16
- 0033562691
- L. Wernisch, M. Hunting, S. J. Wodak, Proteins: Struct. Funct. Genet. 1999, 35, 338.
- (1999) Proteins: Struct. Funct. Genet. , vol.35 , pp. 338
- Wernisch, L.¹ Hunting, M.² Wodak, S.J.³

17
- 45249101784
- T. Liu, M. Guerquin, R. Samudrala, BMC Struct. Biol. 2008, 8, 24.
- (2008) BMC Struct. Biol. , vol.8 , pp. 24
- Liu, T.¹ Guerquin, M.² Samudrala, R.³

18
- 33645299543
- T. R. Lezon, J. R. Banavar, A. M. Lesk, A. Maritan, Proteins 2006, 63, 273.
- (2006) Proteins , vol.63 , pp. 273
- Lezon, T.R.¹ Banavar, J.R.² Lesk, A.M.³ Maritan, A.⁴

19
- 65249145330
- A. Kernytsky, B. Rost, Proteins 2009, 75, 75.
- (2009) Proteins , vol.75 , pp. 75
- Kernytsky, A.¹ Rost, B.²

20
- 0037267407
- P. E. Bourne, I. N. Shindyalov, Methods Biochem. Anal. 2003, 44, 321.
- (2003) Methods Biochem. Anal. , vol.44 , pp. 321
- Bourne, P.E.¹ Shindyalov, I.N.²

21
- 84907299824
- A. Barbato, P. Benkert, T. Schwede, A. Tramontano, J. Kosinski, Bioinformatics 2012, 28, 1039.
- (2012) Bioinformatics , vol.28 , pp. 1039
- Barbato, A.¹ Benkert, P.² Schwede, T.³ Tramontano, A.⁴ Kosinski, J.⁵

22
- 34548684339
- H. Kaur, A. Garg, G. P. S. Raghava, Protein Peptide Lett. 2007, 14, 626.
- (2007) Protein Peptide Lett. , vol.14 , pp. 626
- Kaur, H.¹ Garg, A.² Raghava, G.P.S.³

23
- 0028802198
- H. Flöckner, M. Braxenthaler, P. Lackner, M. Jaritz, M. Ortner, M. J. Sippl, Proteins 1995, 23, 376.
- (1995) Proteins , vol.23 , pp. 376
- Flöckner, H.¹ Braxenthaler, M.² Lackner, P.³ Jaritz, M.⁴ Ortner, M.⁵ Sippl, M.J.⁶

24
- 24744437347
- T. R. Hvidsten, A. Kryshtafovych, J. Komorowski, K. Fidelis, Bioinformatics 2003, 19, 81.
- (2003) Bioinformatics , vol.19 , pp. 81
- Hvidsten, T.R.¹ Kryshtafovych, A.² Komorowski, J.³ Fidelis, K.⁴

25
- 12844288890
- Y. Zhang, J. Skolnick, Proc. Natl. Acad. Sci. USA 2005, 102, 1029.
- (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 1029
- Zhang, Y.¹ Skolnick, J.²

26
- 79959564695
- D. B. Roche, M. T. Buenavista, S. J. Tetchner, L. J. McGuffin, Nucleic Acids Res. 2011, 39, W171.
- (2011) Nucleic Acids Res. , vol.39
- Roche, D.B.¹ Buenavista, M.T.² Tetchner, S.J.³ McGuffin, L.J.⁴

27
- 84880135206
- In; P. E. Bourne, H. Weissig, Eds.; John Wiley & Sons: New Jersey, 44, Chapter 18, doi: 10.1002/0471721204.ch18.
- L. Wernisch, S. J. Wodak, In Structural Bioinformatics;, P. E. Bourne, H. Weissig, Eds.; John Wiley & Sons: New Jersey, 2005; Vol. 44, Chapter 18, doi: 10.1002/0471721204.ch18.
- (2005) Structural Bioinformatics
- Wernisch, L.¹ Wodak, S.J.²

28
- 0035812694
- D. Baker, A. Sali, Science 2001, 294, 93.
- (2001) Science , vol.294 , pp. 93
- Baker, D.¹ Sali, A.²

29
- 0036305769
- I. Sommer, A. Zien, N. von Ohsen, R. Zimmer, T. Lengauer, Bioinformatics 2002, 18, 802.
- (2002) Bioinformatics , vol.18 , pp. 802
- Sommer, I.¹ Zien, A.² Von Ohsen, N.³ Zimmer, R.⁴ Lengauer, T.⁵

30
- 84907299706
- G. P. S. Raghava, J. Biosci. 1999, 24, 76.
- (1999) J. Biosci. , vol.24 , pp. 76
- Raghava, G.P.S.¹

31
- 40549088876
- M. A. Olson, M. Feig, C. L. Brooks, III, J. Comput. Chem. 2008, 29, 820.
- (2008) J. Comput. Chem. , vol.29 , pp. 820
- Olson, M.A.¹ Feig, M.² Brooks Iii, C.L.³

32
- 0034651866
- I. N. Shindyalov, P. E. Bourne, Proteins 2000, 15, 247.
- (2000) Proteins , vol.15 , pp. 247
- Shindyalov, I.N.¹ Bourne, P.E.²

33
- 34347384999
- A. Tramontano, W. R. Pearson, Curr. Op. Struct. Biol. 2007, 17, 334.
- (2007) Curr. Op. Struct. Biol. , vol.17 , pp. 334
- Tramontano, A.¹ Pearson, W.R.²

34
- 0022701772
- T. A. Jones, S. Thirup, EMBO J. 1986, 5, 819.
- (1986) EMBO J. , vol.5 , pp. 819
- Jones, T.A.¹ Thirup, S.²

35
- 0036406112
- R. Kolodny, P. Koehl, L. Guibas, M. Levitt, J. Mol. Biol. 2002, 323, 297.
- (2002) J. Mol. Biol. , vol.323 , pp. 297
- Kolodny, R.¹ Koehl, P.² Guibas, L.³ Levitt, M.⁴

36
- 34548608483
- H. Zhou, J. Skolnick, Biophys J. 2007, 93, 1510.
- (2007) Biophys J. , vol.93 , pp. 1510
- Zhou, H.¹ Skolnick, J.²

37
- 30444446362
- J. M. Bujnicki, Chem. Biochem. 2006, 7, 19.
- (2006) Chem. Biochem. , vol.7 , pp. 19
- Bujnicki, J.M.¹

38
- 77649240530
- I. Budowski-Tal, Y. Nov, R. Kolodny, Proc. Natl. Acad. Sci. USA 2010, 23, 3481.
- (2010) Proc. Natl. Acad. Sci. USA , vol.23 , pp. 3481
- Budowski-Tal, I.¹ Nov, Y.² Kolodny, R.³

39
- 0024527223
- M. Claessens, E. Van Cutsem, I. Lasters, S. Wodak, Protein Eng. 1989, 2, 335.
- (1989) Protein Eng. , vol.2 , pp. 335
- Claessens, M.¹ Van Cutsem, E.² Lasters, I.³ Wodak, S.⁴

40
- 1842853736
- R. R. Copley, R. B. Russell, Methods Mol Biol. 2003, 211, 411.
- (2003) Methods Mol Biol. , vol.211 , pp. 411
- Copley, R.R.¹ Russell, R.B.²

41
- 0024395940
- R. Unger, D. Harel, S. Wherland, J. L. Sussman, Proteins 1989, 5, 355.
- (1989) Proteins , vol.5 , pp. 355
- Unger, R.¹ Harel, D.² Wherland, S.³ Sussman, J.L.⁴

42
- 2442592993
- A. C. Camproux, R. Gautier, P. Tuffery, J. Mol. Biol. 2004, 339, 591.
- (2004) J. Mol. Biol. , vol.339 , pp. 591
- Camproux, A.C.¹ Gautier, R.² Tuffery, P.³

43
- 84862225232
- D. Xu, Y. Zhang, Proteins 2012, 80, 1715.
- (2012) Proteins , vol.80 , pp. 1715
- Xu, D.¹ Zhang, Y.²

44
- 0031585984
- K. T. Simons, C. Kooperberg, E. Huang, D. Baker, J. Mol. Biol. 1997, 268, 209.
- (1997) J. Mol. Biol. , vol.268 , pp. 209
- Simons, K.T.¹ Kooperberg, C.² Huang, E.³ Baker, D.⁴

45
- 1642464839
- C. A. Rohl, C. E. Strauss, K. M. Misura, D. Baker, Methods Enzymol. 2004, 383, 66.
- (2004) Methods Enzymol. , vol.383 , pp. 66
- Rohl, C.A.¹ Strauss, C.E.² Misura, K.M.³ Baker, D.⁴

46
- 0037343306
- R. Kolodny, M. Levitt, Biopolymers 2003, 68, 278.
- (2003) Biopolymers , vol.68 , pp. 278
- Kolodny, R.¹ Levitt, M.²

47
- 0142116211
- G. Chikenji, Y. Fujitsuka, S. Takada, J. Chem. Phys. 2003, 119, 6895.
- (2003) J. Chem. Phys. , vol.119 , pp. 6895
- Chikenji, G.¹ Fujitsuka, Y.² Takada, S.³

48
- 14744276882
- J. Lee, S. Y. Kim, J. Lee, Biophys. Chem. 2005, 115, 209.
- (2005) Biophys. Chem. , vol.115 , pp. 209
- Lee, J.¹ Kim, S.Y.² Lee, J.³

49
- 0242267507
- D. T. Jones, L. J. McGuffin, Proteins 2003, S6, 480.
- (2003) Proteins , vol.6 S , pp. 480
- Jones, D.T.¹ McGuffin, L.J.²

50
- 77954065271
- A. Roy, A. Kucukural, Y. Zhang, Nat. Protoc. 2010, 5, 725.
- (2010) Nat. Protoc. , vol.5 , pp. 725
- Roy, A.¹ Kucukural, A.² Zhang, Y.³

51
- 0034604368
- C. Brystoff, V. Thorsson, D. Baker, J. Mol. Biol. 2000, 301, 173.
- (2000) J. Mol. Biol. , vol.301 , pp. 173
- Brystoff, C.¹ Thorsson, V.² Baker, D.³

52
- 33749368323
- T. Hamelryck, J. T. Kent, A. Krogh, PLoS Comput. Biol. 2006, 2, 1121.
- (2006) PLoS Comput. Biol. , vol.2 , pp. 1121
- Hamelryck, T.¹ Kent, J.T.² Krogh, A.³

53
- 62649111500
- J. DeBartolo, A. Colubri, A. K. Jha, J. E. Fitzgerald, K. F. Freed, T. R. Sosnick, Proc. Natl. Acad. Sci. USA 2009, 106, 3734.
- (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 3734
- Debartolo, J.¹ Colubri, A.² Jha, A.K.³ Fitzgerald, J.E.⁴ Freed, K.F.⁵ Sosnick, T.R.⁶

54
- 33846232296
- W. W. Chen, J. S. Yang, E. I. Shakhnovich, Proteins 2007, 66, 682.
- (2007) Proteins , vol.66 , pp. 682
- Chen, W.W.¹ Yang, J.S.² Shakhnovich, E.I.³

55
- 50849085804
- F. Zhao, S. Li, B. W. Sterner, J. Xu, Proteins 2008, 73, 228.
- (2008) Proteins , vol.73 , pp. 228
- Zhao, F.¹ Li, S.² Sterner, B.W.³ Xu, J.⁴

56
- 77954179479
- F. Zhao, J. Peng, J. Xu, Bioinformatics 2010, 26, i310.
- (2010) Bioinformatics , vol.26
- Zhao, F.¹ Peng, J.² Xu, J.³

57
- 70350738241
- E. Faraggi, Y. Yang, S. Zhang, Y. Zhou, Structure 2009, 17, 1515.
- (2009) Structure , vol.17 , pp. 1515
- Faraggi, E.¹ Yang, Y.² Zhang, S.³ Zhou, Y.⁴

58
- 0038298788
- K. Vegadesan, N. Gautham, Biophys. J. 2003, 84, 2897.
- (2003) Biophys. J. , vol.84 , pp. 2897
- Vegadesan, K.¹ Gautham, N.²

59
- 33845678630
- B. Jayaram, K. Bhushan, S. R. Shenoy, P. Narang, S. Bose, P. Agrawal, D. Sahu, V. Pandey, Nucleic Acids Res. 2006, 34, 6195.
- (2006) Nucleic Acids Res. , vol.34 , pp. 6195
- Jayaram, B.¹ Bhushan, K.² Shenoy, S.R.³ Narang, P.⁴ Bose, S.⁵ Agrawal, P.⁶ Sahu, D.⁷ Pandey, V.⁸

60
- 0034044314
- L. J. McGuffin, K. Bryson, D. T. Jones, Bioinformatics 2000, 16, 404.
- (2000) Bioinformatics , vol.16 , pp. 404
- McGuffin, L.J.¹ Bryson, K.² Jones, D.T.³

61
- 0030801002
- S. F. Altschul, T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, D. J. Lipman, Nucleic Acids Res. 1997, 25, 3389.
- (1997) Nucleic Acids Res. , vol.25 , pp. 3389
- Altschul, S.F.¹ Madden, T.L.² Schäffer, A.A.³ Zhang, J.⁴ Zhang, Z.⁵ Miller, W.⁶ Lipman, D.J.⁷

62
- 75549090603
- R. D. Finn, J. Tate, J. Mistry, P. C. Coggill, S. J. Sammut, H. R. Hotz, G. Ceric, K. Forslund, S. R. Eddy, E. L. L. Sonnhammer, A. Bateman, Nucleic Acid Res. 2010, 38, D211.
- (2010) Nucleic Acid Res. , vol.38
- Finn, R.D.¹ Tate, J.² Mistry, J.³ Coggill, P.C.⁴ Sammut, S.J.⁵ Hotz, H.R.⁶ Ceric, G.⁷ Forslund, K.⁸ Eddy, S.R.⁹ Sonnhammer, E.L.L.¹⁰ Bateman, A.¹¹

63
- 0028961335
- A. Murzin, S. E. Brenner, T. Hubbard, C. Chothia, J. Mol. Biol. 1995, 247, 536.
- (1995) J. Mol. Biol. , vol.247 , pp. 536
- Murzin, A.¹ Brenner, S.E.² Hubbard, T.³ Chothia, C.⁴

64
- 0032919371
- L. Holm, C. Sander, Nucleic Acids Res. 1999, 27, 244.
- (1999) Nucleic Acids Res. , vol.27 , pp. 244
- Holm, L.¹ Sander, C.²

65
- 67649887151
- A. Lobley, M. I. Sadowski, D. T. Jones, Bioinformatics 2009, 25, 1761.
- (2009) Bioinformatics , vol.25 , pp. 1761
- Lobley, A.¹ Sadowski, M.I.² Jones, D.T.³

66
- 0038634975
- L. J. McGuffin, D. T. Jones, Bioinformatics 2003, 19, 874.
- (2003) Bioinformatics , vol.19 , pp. 874
- McGuffin, L.J.¹ Jones, D.T.²

67
- 16344373015
- J. Söding, Bioinformatics 2005, 21, 951.
- (2005) Bioinformatics , vol.21 , pp. 951
- Söding, J.¹

68
- 23144463912
- L. Jaroszewski, L. Rychlewski, Z. Li, W. Li, A. Godzik, Nucleic Acids Res. 2005, 33, W284.
- (2005) Nucleic Acids Res. , vol.33
- Jaroszewski, L.¹ Rychlewski, L.² Li, Z.³ Li, W.⁴ Godzik, A.⁵

69
- 79960001809
- L. Jaroszewski, Z. Li, X. H. Cai, C. Weber, A. Godzik, Nuceic Acids Res. 2011, 39, W38.
- (2011) Nuceic Acids Res. , vol.39
- Jaroszewski, L.¹ Li, Z.² Cai, X.H.³ Weber, C.⁴ Godzik, A.⁵

70
- 0033846832
- L. Jaroszewski, L. Rychlewski, A. Godzik, Protein Sci. 2000, 9, 1487.
- (2000) Protein Sci. , vol.9 , pp. 1487
- Jaroszewski, L.¹ Rychlewski, L.² Godzik, A.³

71
- 79960394811
- Y. Yang, E. Faraggi, H. Zhao, Y. Zhou, Bioinformatics 2011, 27, 2076.
- (2011) Bioinformatics , vol.27 , pp. 2076
- Yang, Y.¹ Faraggi, E.² Zhao, H.³ Zhou, Y.⁴

72
- 0027136282
- A. Sali, T. L. Blundell, J. Mol. Biol. 1993, 234, 779.
- (1993) J. Mol. Biol. , vol.234 , pp. 779
- Sali, A.¹ Blundell, T.L.²

73
- 0028871814
- A. Sali, L. Potterton, F. Yuan, H. V. Vlijmen, M. Karplus, Proteins 1995, 23, 318.
- (1995) Proteins , vol.23 , pp. 318
- Sali, A.¹ Potterton, L.² Yuan, F.³ Vlijmen, H.V.⁴ Karplus, M.⁵

74
- 20744432158
- P. Narang, K. Bhushan, S. Bose, B. Jayaram, Phys. Chem. Chem. Phys. 2005, 7, 2364.
- (2005) Phys. Chem. Chem. Phys. , vol.7 , pp. 2364
- Narang, P.¹ Bhushan, K.² Bose, S.³ Jayaram, B.⁴

75
- 84863638973
- B. Jayaram, P. Dhingra, B. Lakhani, S. Shekhar, J. Chem. Sci. 2012, 124, 83.
- (2012) J. Chem. Sci. , vol.124 , pp. 83
- Jayaram, B.¹ Dhingra, P.² Lakhani, B.³ Shekhar, S.⁴

76
- 33947515041
- L. Thukral, S. R. Shenoy, K. Bhushan, B. Jayaram, J. Biosci. 2007, 32, 71.
- (2007) J. Biosci. , vol.32 , pp. 71
- Thukral, L.¹ Shenoy, S.R.² Bhushan, K.³ Jayaram, B.⁴

77
- 84880135693
- (a)
- (a), P. Narang, K. Bhushan, S. Bose, B. Jayaram, J. Biomol. Struct. Dyn. 2006, 45A, 1834
- (2006) J. Biomol. Struct. Dyn. , vol.45 A , pp. 1834
- Narang, P.¹ Bhushan, K.² Bose, S.³ Jayaram, B.⁴

78
- 0000550720
- (b)
- (b), Nidhi Arora, and, B. Jayaram, J. Comput. Chem. 1997, 18, 1245
- (1997) J. Comput. Chem. , vol.18 , pp. 1245
- Arora, N.¹ Jayaram, B.²

79
- 84880137184
- (c), in press.
- (c), A. Mishra, S. Rao, A. Mittal, and, B. Jayaram, BBA Proteins, 2013, in press.
- (2013) BBA Proteins
- Mishra, A.¹ Rao, S.² Mittal, A.³ Jayaram, B.⁴

80
- 0029633186
- D. A. Pearlman, D. A. Case, J. W. Caldwell, W. S. Ross, T. E. III Cheatham, S. Debolt, D. Ferguson, G. Seibel, P. Kollman, Comput. Phys. Commun. 1995, 91, 1.
- (1995) Comput. Phys. Commun. , vol.91 , pp. 1
- Pearlman, D.A.¹ Case, D.A.² Caldwell, J.W.³ Ross, W.S.⁴ Cheatham Iii, T.E.⁵ Debolt, S.⁶ Ferguson, D.⁷ Seibel, G.⁸ Kollman, P.⁹

81
- 77951961719
- J. Xu, Y. Zhang, Bioinformatics 2010, 26, 889.
- (2010) Bioinformatics , vol.26 , pp. 889
- Xu, J.¹ Zhang, Y.²

82
- 84907299744
- Y. Zhang, J. Skolnick, Nucleic Acids Res. 2005, 33, 2303.
- (2005) Nucleic Acids Res. , vol.33 , pp. 2303
- Zhang, Y.¹ Skolnick, J.²

83
- 0032606039
- J. Moult, T. Hubbard, K. Fidelis, J. T. Pedersen, Proteins 1999, 37, 2.
- (1999) Proteins , vol.37 , pp. 2
- Moult, J.¹ Hubbard, T.² Fidelis, K.³ Pedersen, J.T.⁴

84
- 84907299700
- S. C. Li, D. Bu, J. Xu, M. Li, Protein Sci. 2008, 17, 1923.
- (2008) Protein Sci. , vol.17 , pp. 1923
- Li, S.C.¹ Bu, D.² Xu, J.³ Li, M.⁴

85
- 84864051667
- D. Simoncini, F. Berenger, R. Shrestha, K. Y. J. Zhang, PLoS ONE 2012, 7, e38799.
- (2012) PLoS ONE , vol.7
- Simoncini, D.¹ Berenger, F.² Shrestha, R.³ Zhang, K.Y.J.⁴

86
- 80054685109
- J. Moult, K. Fidelis, A. Kryshtafovych, A. Tramontano, Proteins 2011, 79, 1.
- (2011) Proteins , vol.79 , pp. 1
- Moult, J.¹ Fidelis, K.² Kryshtafovych, A.³ Tramontano, A.⁴

87
- 33846057724
- K. D. Pruitt, T. Tatusova, D. R. Maglott, Nucleic Acid Res. 2007, 35, D61.
- (2007) Nucleic Acid Res. , vol.35
- Pruitt, K.D.¹ Tatusova, T.² Maglott, D.R.³

88
- 36448991500
- M. A. Larkin, G. Blackshields, N. P. Brown, R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, D. G. Higgins, Bioinformatics 2007, 23, 2947.
- (2007) Bioinformatics , vol.23 , pp. 2947
- Larkin, M.A.¹ Blackshields, G.² Brown, N.P.³ Chenna, R.⁴ McGettigan, P.A.⁵ McWilliam, H.⁶ Valentin, F.⁷ Wallace, I.M.⁸ Wilm, A.⁹ Lopez, R.¹⁰ Thompson, J.D.¹¹ Gibson, T.J.¹² Higgins, D.G.¹³

89
- 0034985005
- R. Bonneau, D. Baker, Annu. Rev. Biophys. Biomol. Struct. 2001, 30, 173.
- (2001) Annu. Rev. Biophys. Biomol. Struct. , vol.30 , pp. 173
- Bonneau, R.¹ Baker, D.²

90
- 84874838850
- B. Jayaram, P. Dhingra, Curr. Bioinform. 2012, 7, 424.
- (2012) Curr. Bioinform , vol.7 , pp. 424
- Jayaram, B.¹ Dhingra, P.²

91
- 84880132344
- Accessed May 21, 2013
- Available at: http://predictioncenter.org/casp10/. Accessed May 21, 2013.

92
- 0031585984
- K. T. Simons, C. Kooperberg, E. Huang, D. Baker, J. Mol. Biol. 1997, 268, 209.
- (1997) J. Mol. Biol. , vol.268 , pp. 209
- Simons, K.T.¹ Kooperberg, C.² Huang, E.³ Baker, D.⁴

93
- 80855132435
- L. Kinch, S. Shi, H. Cheng, Q. Cong, J. Pei, V. Mariani, T. Schwede, N. V. Grishin, Proteins 2011, 79, 21.
- (2011) Proteins , vol.79 , pp. 21
- Kinch, L.¹ Shi, S.² Cheng, H.³ Cong, Q.⁴ Pei, J.⁵ Mariani, V.⁶ Schwede, T.⁷ Grishin, N.V.⁸

94
- 74549178560
- V. B. Chen, W. B. Arendall, 3rd, J. J. Headd, D. A. Keedy, R. M. Immormino, G. J. Kapral, L. W. Murray, J. S. Richardson, D. C. Richardson, Acta Crystallogr. D Biol. Crystallogr. 2010, 66, 12.
- (2010) Acta Crystallogr. D Biol. Crystallogr. , vol.66 , pp. 12
- Chen, V.B.¹ Arendall III, W.B.² Headd, J.J.³ Keedy, D.A.⁴ Immormino, R.M.⁵ Kapral, G.J.⁶ Murray, L.W.⁷ Richardson, J.S.⁸ Richardson, D.C.⁹

95
- 70450106216
- G. G. Krivov, M., V. Shapovalov, R. L. Dunbrack, Jr,., Proteins 2009, 77, 778.
- (2009) Proteins , vol.77 , pp. 778
- Krivov, G.G.¹ Shapovalov, M.V.² Dunbrack Jr., R.L.³

96
- 23444454552
- D. A. Case, T. Cheatham, T. Darden, H. Gohlke, R. Luo, K. M. Merz, Jr,., A., Onufriev, C., Simmerling, B., Wang, R., Woods, J. Comput. Chem. 2005, 26, 1668.
- (2005) J. Comput. Chem. , vol.26 , pp. 1668
- Case, D.A.¹ Cheatham, T.² Darden, T.³ Gohlke, H.⁴ Luo, R.⁵ Merz, K.M.A.⁶ Onufriev, C.⁷ Simmerling, B.⁸ Wang, R.⁹ Woods¹⁰

97
- 0029987862
- B. Park, M. Levitt, J. Mol. Biol. 1996, 258, 367.
- (1996) J. Mol. Biol. , vol.258 , pp. 367
- Park, B.¹ Levitt, M.²

98
- 33751198084
- S. B. Dixit, R. Bhasin, E. Rajasekaran, B. Jayaram, J. Chem. Soc. Faraday Trans. 1997, 93, 1105.
- (1997) J. Chem. Soc. Faraday Trans. , vol.93 , pp. 1105
- Dixit, S.B.¹ Bhasin, R.² Rajasekaran, E.³ Jayaram, B.⁴

99
- 80052848450
- S. E. Moughon, R. Samudrala, BMC Bioinform. 2011, 12, 368.
- (2011) BMC Bioinform. , vol.12 , pp. 368
- Moughon, S.E.¹ Samudrala, R.²

100
- 84907299807
- N. Gautham, Z. A. Rafi, Curr. Sci. 1992, 63, 9.
- (1992) Curr. Sci. , vol.63 , pp. 9
- Gautham, N.¹ Rafi, Z.A.²

101
- 46449132707
- Y. Yang, Y. Zhou, Proteins 2008, 72, 793.
- (2008) Proteins , vol.72 , pp. 793
- Yang, Y.¹ Zhou, Y.²

102
- 46449139781
- Y. Yang, Y. Zhou, Protein Sci. 2008, 17, 1212.
- (2008) Protein Sci. , vol.17 , pp. 1212
- Yang, Y.¹ Zhou, Y.²

103
- 78650958663
- A. Mittal, B. Jayaram, J. Biomol. Struct. Dyn. 2011, 28, 443.
- (2011) J. Biomol. Struct. Dyn. , vol.28 , pp. 443
- Mittal, A.¹ Jayaram, B.²

104
- 77957298312
- A. Mittal, B. Jayaram, S. Shenoy, T. S. Bawa, J. Biomol. Struct. Dyn. 2010, 28, 133.
- (2010) J. Biomol. Struct. Dyn. , vol.28 , pp. 133
- Mittal, A.¹ Jayaram, B.² Shenoy, S.³ Bawa, T.S.⁴

105
- 0030048675
- K. Yue, K. A. Dill, Protein Sci. 1996, 5, 254.
- (1996) Protein Sci. , vol.5 , pp. 254
- Yue, K.¹ Dill, K.A.²

106
- 84880137179
- Available at: http://hdl.handle.net/10101/npre.2008.2135.1.
- B. Jayaram, Nat. Prec. 2008, Available at: http://hdl.handle.net/10101/ npre.2008.2135.1. Biology
- (2008) Nat. Prec.
- Jayaram, B.¹

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