-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0033954256
-
The protein data bank
-
Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
3
-
-
0036468396
-
Protein-protein association kinetics and protein docking
-
Camacho,C.J. and Vajda,S. (2002) Protein-protein association kinetics and protein docking. Curr. Opin. Struct. Biol., 12, 36-40.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 36-40
-
-
Camacho, C.J.1
Vajda, S.2
-
4
-
-
0036188264
-
Predicting reliable regions in protein sequence alignments
-
Cline,M., Hughey,R. and Karplus,K. (2002) Predicting reliable regions in protein sequence alignments. Bioinformatics, 18, 306-314.
-
(2002)
Bioinformatics
, vol.18
, pp. 306-314
-
-
Cline, M.1
Hughey, R.2
Karplus, K.3
-
5
-
-
0034663597
-
Application of enhanced multiple sequence alignment profiles to improve protein secondary structure prediction
-
Cuff,J.A. and Barton,G.J. (2000) Application of enhanced multiple sequence alignment profiles to improve protein secondary structure prediction. PROTEINS: Structure, Function and Genetics, 40, 502-511.
-
(2000)
PROTEINS: Structure, Function and Genetics
, vol.40
, pp. 502-511
-
-
Cuff, J.A.1
Barton, G.J.2
-
6
-
-
0034956837
-
SCORE: Predicting the core of protein models
-
Deane,C.M., Kaas,Q. and Blundell,T.L. (2001) SCORE: predicting the core of protein models. Bioinformatics, 17, 541-550.
-
(2001)
Bioinformatics
, vol.17
, pp. 541-550
-
-
Deane, C.M.1
Kaas, Q.2
Blundell, T.L.3
-
7
-
-
0031743421
-
Profile hidden Markov models
-
Eddy,S.R. (1998). Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
9
-
-
0004345620
-
Comparative protein structure modeling
-
Marcel Dekker, New York
-
Fiser,A., Sanchez,R., Melo,F. and Sali,A. (2001) Comparative protein structure modeling. Computational Biochemistry and Biophysics. Marcel Dekker, New York, pp. 275-312.
-
(2001)
Computational Biochemistry and Biophysics
, pp. 275-312
-
-
Fiser, A.1
Sanchez, R.2
Melo, F.3
Sali, A.4
-
10
-
-
0029936121
-
Surprising similarities in structure comparison
-
Gibrat,J.-F., Madej,T. and Bryant,S.H. (1996) Surprising similarities in structure comparison. Curr. Opin. Struct. Biol., 6, 377-385.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 377-385
-
-
Gibrat, J.-F.1
Madej, T.2
Bryant, S.H.3
-
11
-
-
0028290005
-
Parser for protein folding units
-
Holm,L. and Sander,C. (1994) Parser for protein folding units. PROTEINS: Structure, Function and Genetics, 19, 256-268.
-
(1994)
PROTEINS: Structure, Function and Genetics
, vol.19
, pp. 256-268
-
-
Holm, L.1
Sander, C.2
-
12
-
-
0029785147
-
Mapping the protein universe
-
Holm,L. and Sander,C. (1996) Mapping the protein universe. Science, 273, 595-602.
-
(1996)
Science
, vol.273
, pp. 595-602
-
-
Holm, L.1
Sander, C.2
-
13
-
-
0033846832
-
Improving the quality of twilight-zone alignments
-
Jaroszewski,L., Rychlewski,L. and Godzik,A. (2000) Improving the quality of twilight-zone alignments. Protein Sci., 9, 1487-1496.
-
(2000)
Protein Sci.
, vol.9
, pp. 1487-1496
-
-
Jaroszewski, L.1
Rychlewski, L.2
Godzik, A.3
-
14
-
-
0032438987
-
Hidden Markov models for detecting remote protein homologies
-
Karplus,K., Barrett,C. and Hughey,R. (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics, 14, 846-856.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
15
-
-
0035141353
-
Dynamical view of the positions of key side chains in protein-protein recognition
-
Kimura,R., Brower,R., Vajda,S. and Camacho,C.J. (2001) Dynamical view of the positions of key side chains in protein-protein recognition. Biophys. J., 80, 635-642.
-
(2001)
Biophys. J.
, vol.80
, pp. 635-642
-
-
Kimura, R.1
Brower, R.2
Vajda, S.3
Camacho, C.J.4
-
16
-
-
0028838717
-
Threading a database of protein cores
-
Madej,T., Gibrat,J.-F. and Bryant,S.H. (1995) Threading a database of protein cores. PROTEINS: Structure, Function and Genetics, 23, 356-369.
-
(1995)
PROTEINS: Structure, Function and Genetics
, vol.23
, pp. 356-369
-
-
Madej, T.1
Gibrat, J.-F.2
Bryant, S.H.3
-
17
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom,M.A., Stuart,A.C., Fiser,A., Sanchez,R., Melo,F. and Sali,A. (2000) Comparative protein structure modeling of genes and genomes. Ann. Rev. Biophys. Biomol. Struct., 29, 291-325.
-
(2000)
Ann. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
18
-
-
0032962457
-
Twilightzone of protein sequence alignments
-
Rost,B. (1999) Twilightzone of protein sequence alignments. Protein Eng., 12, 85-94.
-
(1999)
Protein Eng.
, vol.12
, pp. 85-94
-
-
Rost, B.1
-
19
-
-
0034237578
-
Large-scale comparison of protein sequence alignment algorithms with structure alignments
-
Sander,J.M., Arthur,J.W. and Dunbrack,R.L. (2000) Large-scale comparison of protein sequence alignment algorithms with structure alignments. PROTEINS: Structure, Function and Genetics, 40, 6-22.
-
(2000)
PROTEINS: Structure, Function and Genetics
, vol.40
, pp. 6-22
-
-
Sander, J.M.1
Arthur, J.W.2
Dunbrack, R.L.3
-
20
-
-
0030908273
-
Advances in protein-structure comparative modeling
-
Sanchez,R. and Sali,A. (1997a) Advances in protein-structure comparative modeling. Curr. Opin. Struct. Biol., 7, 206-214.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 206-214
-
-
Sanchez, R.1
Sali, A.2
-
21
-
-
0031307019
-
Evaluation of comparative protein structure modeling by MODELLER-3
-
Sanchez,R. and Sali,A. (1997b) Evaluation of comparative protein structure modeling by MODELLER-3. PROTEINS: Structure, Function and Genetics, Suppl. 1, 50-58.
-
(1997)
PROTEINS: Structure, Function and Genetics
, Issue.SUPPL. 1
, pp. 50-58
-
-
Sanchez, R.1
Sali, A.2
-
22
-
-
0028943588
-
Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions
-
Siddiqui,A.S. and Barton,G.J. (1995) Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions. Protein Sci., 4, 872-884.
-
(1995)
Protein Sci.
, vol.4
, pp. 872-884
-
-
Siddiqui, A.S.1
Barton, G.J.2
-
23
-
-
0035102149
-
3Dee: A database of protein structural domains
-
Siddiqui,A.S., Dengler,U. and Barton,G.J. (2001) 3Dee: a database of protein structural domains. Bioinformatics, 17, 200-201.
-
(2001)
Bioinformatics
, vol.17
, pp. 200-201
-
-
Siddiqui, A.S.1
Dengler, U.2
Barton, G.J.3
-
24
-
-
0028914725
-
An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins
-
Sowdhamini,R. and Blundell,T.L. (1995) An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins. Protein Sci., 4, 506-520.
-
(1995)
Protein Sci.
, vol.4
, pp. 506-520
-
-
Sowdhamini, R.1
Blundell, T.L.2
-
25
-
-
0032951163
-
Protein structural domain identification
-
Taylor,W.R. (1999) Protein structural domain identification. Protein Eng., 12, 203-216.
-
(1999)
Protein Eng.
, vol.12
, pp. 203-216
-
-
Taylor, W.R.1
-
26
-
-
0027968068
-
CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
27
-
-
0035748717
-
Comparative modeling of CASP4 target proteins: Combining results of sequence search with three-dimensional structure assessment
-
Venclovas, C. (2001) Comparative modeling of CASP4 target proteins: combining results of sequence search with three-dimensional structure assessment. PROTEINS: Structure, Function and Genetics, Suppl. 5, 47-54.
-
(2001)
PROTEINS: Structure, Function and Genetics
, Issue.SUPPL. 5
, pp. 47-54
-
-
Venclovas, C.1
-
28
-
-
0035703310
-
Processing and evaluation of predictions in CASP4
-
Zemla,A., Venclovas,C., Moult,J. and Fidelis,K. (2001) Processing and evaluation of predictions in CASP4. PROTEINS: Structure, Function and Genetics, Suppl. 5, 13-21.
-
(2001)
PROTEINS: Structure, Function and Genetics
, Issue.SUPPL. 5
, pp. 13-21
-
-
Zemla, A.1
Venclovas, C.2
Moult, J.3
Fidelis, K.4
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