메뉴 건너뛰기




Volumn 38, Issue 3, 2000, Pages 247-260

An alternative view of protein fold space

Author keywords

Combinatorial extension; Protein fold space; Protein structure comparison; Protein structure neighbors; Protein structure similarity; Substructure similarity

Indexed keywords

M PROTEIN;

EID: 0034651866     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(20000215)38:3<247::AID-PROT2>3.0.CO;2-T     Document Type: Article
Times cited : (85)

References (34)
  • 1
    • 0019332167 scopus 로고
    • How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
    • Lesk AM, Chothia C. How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J Mol Biol 1980;136:225-270.
    • (1980) J Mol Biol , vol.136 , pp. 225-270
    • Lesk, A.M.1    Chothia, C.2
  • 2
    • 0022706389 scopus 로고
    • The relation between the divergence of sequence and structure in proteins
    • Chothia C, Lesk AM. The relation between the divergence of sequence and structure in proteins EMBO J 1986;5:823-826.
    • (1986) EMBO J , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.M.2
  • 4
    • 0027057526 scopus 로고
    • A database of protein structure families with common folding motifs
    • Holm L, Ouzounis C, Sander C, Tuparev G, Vriend G. A database of protein structure families with common folding motifs. Protein Sci 1992;1:1691-1698.
    • (1992) Protein Sci , vol.1 , pp. 1691-1698
    • Holm, L.1    Ouzounis, C.2    Sander, C.3    Tuparev, G.4    Vriend, G.5
  • 5
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • Holm L, Sander C. Mapping the protein universe. Science 1996;273: 595-603.
    • (1996) Science , vol.273 , pp. 595-603
    • Holm, L.1    Sander, C.2
  • 6
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 7
    • 0031865006 scopus 로고    scopus 로고
    • Touring protein fold space with Dali/FSSP
    • Holm L, Sander C. Touring protein fold space with Dali/FSSP. Nucleic Acids Res 1998;26:316-319.
    • (1998) Nucleic Acids Res , vol.26 , pp. 316-319
    • Holm, L.1    Sander, C.2
  • 8
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm L, Sander C. Protein structure comparison by alignment of distance matrices. J Mol Biol 1993;233:123-138.
    • (1993) J Mol Biol , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 12
    • 0028232955 scopus 로고
    • Searching protein structure databases has come of age
    • Holm L, Sander C. Searching protein structure databases has come of age. Proteins 1994;19:165-173.
    • (1994) Proteins , vol.19 , pp. 165-173
    • Holm, L.1    Sander, C.2
  • 13
    • 0029982530 scopus 로고    scopus 로고
    • The structural alignment between two proteins: Is there a unique answer?
    • Godzik A. The structural alignment between two proteins: is there a unique answer? Protein Sci 1996;5:1325-1338.
    • (1996) Protein Sci , vol.5 , pp. 1325-1338
    • Godzik, A.1
  • 14
    • 0028838717 scopus 로고
    • Threading a database of protein cores
    • Madej T, Gibrat JF, Bryant SH. Threading a database of protein cores. Proteins 1995;23:356-369.
    • (1995) Proteins , vol.23 , pp. 356-369
    • Madej, T.1    Gibrat, J.F.2    Bryant, S.H.3
  • 15
    • 0015597839 scopus 로고
    • Nucleation, rapid folding, and globular interchain regions in proteins
    • Wetlaufer DB. Nucleation, rapid folding, and globular interchain regions in proteins. Proc Nat Acad Sci USA 1973;70:697-701.
    • (1973) Proc Nat Acad Sci USA , vol.70 , pp. 697-701
    • Wetlaufer, D.B.1
  • 16
    • 0028891784 scopus 로고
    • Identification and analysis of domains in proteins
    • Islam SA, Luo J, Sternberg MJ. Identification and analysis of domains in proteins. Protein Eng 1995;8:513-525.
    • (1995) Protein Eng , vol.8 , pp. 513-525
    • Islam, S.A.1    Luo, J.2    Sternberg, M.J.3
  • 17
    • 0028943588 scopus 로고
    • Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions
    • Siddiqui AS, Barton GJ. Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions. Protein Sci 1995;4:872-884.
    • (1995) Protein Sci , vol.4 , pp. 872-884
    • Siddiqui, A.S.1    Barton, G.J.2
  • 18
    • 0030348027 scopus 로고    scopus 로고
    • A database of globular protein structural domains
    • Sowdhamini R, Ruffino SD, Blundell TL. A database of globular protein structural domains. Fold Des 1996;1:209-220.
    • (1996) Fold Des , vol.1 , pp. 209-220
    • Sowdhamini, R.1    Ruffino, S.D.2    Blundell, T.L.3
  • 19
    • 0032951163 scopus 로고    scopus 로고
    • Protein structural domain identification
    • Taylor WR. Protein structural domain identification. Protein Eng 1999;12:203-216.
    • (1999) Protein Eng , vol.12 , pp. 203-216
    • Taylor, W.R.1
  • 20
    • 0033562691 scopus 로고    scopus 로고
    • Identification of structural domains in proteins by a graph heuristic
    • Wernisch L, Hunting M, Wodak SJ. Identification of structural domains in proteins by a graph heuristic. Proteins 1999;35:338-352.
    • (1999) Proteins , vol.35 , pp. 338-352
    • Wernisch, L.1    Hunting, M.2    Wodak, S.J.3
  • 21
    • 0031889752 scopus 로고    scopus 로고
    • Domain assignment for protein structures using a consensus approach: Characterization and analysis
    • Jones S, Stewart M, Michie A, Swindells MB, Orengo C, Thornton JM. Domain assignment for protein structures using a consensus approach: characterization and analysis. Protein Sci 1998;7:233-242.
    • (1998) Protein Sci , vol.7 , pp. 233-242
    • Jones, S.1    Stewart, M.2    Michie, A.3    Swindells, M.B.4    Orengo, C.5    Thornton, J.M.6
  • 22
    • 0032189646 scopus 로고    scopus 로고
    • Dictionary of recurrent domains in protein structures
    • Holm L, Sander C. Dictionary of recurrent domains in protein structures. Proteins 1998;33:88-96.
    • (1998) Proteins , vol.33 , pp. 88-96
    • Holm, L.1    Sander, C.2
  • 23
    • 0028015988 scopus 로고
    • The protein threading problem with sequence amino acid interaction preferences is NP-complete
    • Lathrop RH. The protein threading problem with sequence amino acid interaction preferences is NP-complete. Protein Eng 1994;7: 1059-1068.
    • (1994) Protein Eng , vol.7 , pp. 1059-1068
    • Lathrop, R.H.1
  • 24
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • Shindyalov IN, Bourne PE. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng 1998;9:739-747.
    • (1998) Protein Eng , vol.9 , pp. 739-747
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 25
    • 0030710573 scopus 로고    scopus 로고
    • Protein data representation and query using optimized data decomposition
    • Shindyalov IN, Bourne PE. Protein data representation and query using optimized data decomposition. CABIOS 1997;13:487-496.
    • (1997) CABIOS , vol.13 , pp. 487-496
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 27
    • 0028593509 scopus 로고
    • Protein superfamilies and domain superfolds
    • Orengo CA, Jones DT, Thornton JM. Protein superfamilies and domain superfolds. Nature 1994;372:631-634.
    • (1994) Nature , vol.372 , pp. 631-634
    • Orengo, C.A.1    Jones, D.T.2    Thornton, J.M.3
  • 28
    • 0031815861 scopus 로고    scopus 로고
    • A re-estimation for the total numbers of protein folds and superfamilies
    • Wang ZX. A re-estimation for the total numbers of protein folds and superfamilies. Protein Eng 1998;11:621-626.
    • (1998) Protein Eng , vol.11 , pp. 621-626
    • Wang, Z.X.1
  • 29
    • 0030766163 scopus 로고    scopus 로고
    • Crystal structure of the activated insulin receptor tyrosine kinase in complex with peptide substrate and ATP analog
    • Hubbard SR. Crystal structure of the activated insulin receptor tyrosine kinase in complex with peptide substrate and ATP analog. EMBO J 1997;16:5572-5581.
    • (1997) EMBO J , vol.16 , pp. 5572-5581
    • Hubbard, S.R.1
  • 31
    • 0031940246 scopus 로고    scopus 로고
    • An atlas of protein topology cartoons available on the World-Wide Web
    • Westhead DR, Hatton DC, Thornton JM. An atlas of protein topology cartoons available on the World-Wide Web. TIBS 1998;23: 35-36.
    • (1998) TIBS , vol.23 , pp. 35-36
    • Westhead, D.R.1    Hatton, D.C.2    Thornton, J.M.3
  • 32
    • 0028085434 scopus 로고
    • Three-dimensional structure of the biotin carboxylase subunit of acetyl-CoA carboxylase
    • Waldrop GL, Rayment I, Holden HM Three-dimensional structure of the biotin carboxylase subunit of acetyl-CoA carboxylase. Biochemistry 1994;33:10249-10256.
    • (1994) Biochemistry , vol.33 , pp. 10249-10256
    • Waldrop, G.L.1    Rayment, I.2    Holden, H.M.3
  • 33
    • 0032773506 scopus 로고    scopus 로고
    • The immunoglobulin fold family: Sequence analysis and 3D structure comparisons
    • Halaby DM, Poupon A, Mornon J-P. The immunoglobulin fold family: sequence analysis and 3D structure comparisons. Protein Eng 1999;12:563-571.
    • (1999) Protein Eng , vol.12 , pp. 563-571
    • Halaby, D.M.1    Poupon, A.2    Mornon, J.-P.3
  • 34
    • 0031566432 scopus 로고    scopus 로고
    • Recognition of analogous and homologous protein folds: Analysis of sequence and structure conservation
    • Russell RB, Saqi MA, Sayle RA, Bates PA, Sternberg MJ. Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation. J Mol Biol 1997;269:423-439.
    • (1997) J Mol Biol , vol.269 , pp. 423-439
    • Russell, R.B.1    Saqi, M.A.2    Sayle, R.A.3    Bates, P.A.4    Sternberg, M.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.