-
1
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
-
Berman, H., Henrick, K., Nakamura, H. & Markley, J.L. The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data. Nucleic Acids. Res. 35, D301-D303 (2007).
-
(2007)
Nucleic Acids. Res
, vol.35
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
Markley, J.L.4
-
2
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
Wu, C.H. et al. The Universal Protein Resource (UniProt): An expanding universe of protein information. Nucleic Acids. Res. 34, D187-D191 (2006).
-
(2006)
Nucleic Acids. Res
, vol.34
-
-
Wu, C.H.1
-
3
-
-
0027122748
-
-
Chothia, C. Proteins. One thousand families for the molecular biologist. Nature 357, 543-544 (1992).
-
Chothia, C. Proteins. One thousand families for the molecular biologist. Nature 357, 543-544 (1992).
-
-
-
-
4
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia, C. & Lesk, A.M. The relation between the divergence of sequence and structure in proteins. EMBO J. 5, 823-826 (1986).
-
(1986)
EMBO J
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
5
-
-
0025645820
-
An assessment of COMPOSER: A rule-based approach to modelling protein structure
-
Topham, C.M. et al. An assessment of COMPOSER: A rule-based approach to modelling protein structure. Biochem. Soc. Symp. 57 1-9 (1990).
-
(1990)
Biochem. Soc. Symp
, vol.57
, pp. 1-9
-
-
Topham, C.M.1
-
6
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A. & Blundell, T.L. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234, 779-815 (1993).
-
(1993)
J. Mol. Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
7
-
-
0029004590
-
Protein modelling by e-mail
-
Peitsch, M.C. Protein modelling by e-mail. BioTechnology 13, 658-660 (1995).
-
(1995)
BioTechnology
, vol.13
, pp. 658-660
-
-
Peitsch, M.C.1
-
8
-
-
0242330730
-
Assessment of homology-based predictions in CASP5
-
Tramontano, A. & Morea, V. Assessment of homology-based predictions in CASP5. Proteins 53 (Suppl. 6): 352-368 (2003).
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 352-368
-
-
Tramontano, A.1
Morea, V.2
-
9
-
-
30344447955
-
Assessment of predictions submitted for the CASP6 comparative modeling category
-
Tress, M., Ezkurdia, I., Grana, O., Lopez, G. & Valencia, A. Assessment of predictions submitted for the CASP6 comparative modeling category. Proteins 61 (Suppl. 7): 27-45 (2005).
-
(2005)
Proteins
, vol.61
, Issue.SUPPL. 7
, pp. 27-45
-
-
Tress, M.1
Ezkurdia, I.2
Grana, O.3
Lopez, G.4
Valencia, A.5
-
10
-
-
36749086922
-
Assessment of CASP7 structure predictions for template free targets
-
Jauch, R., Yeo, H.C., Kolatkar, P.R. & Clarke, N.D. Assessment of CASP7 structure predictions for template free targets. Proteins 69 (Suppl. 8): 57-67 (2007).
-
(2007)
Proteins
, vol.69
, Issue.SUPPL. 8
, pp. 57-67
-
-
Jauch, R.1
Yeo, H.C.2
Kolatkar, P.R.3
Clarke, N.D.4
-
11
-
-
36749099341
-
Assessment of CASP7 predictions for template-based modeling targets
-
Kopp, J., Bordoli, L., Battey, J.N., Kiefer, F. & Schwede, T. Assessment of CASP7 predictions for template-based modeling targets. Proteins 69 (Suppl. 8): 38-56 (2007).
-
(2007)
Proteins
, vol.69
, Issue.SUPPL. 8
, pp. 38-56
-
-
Kopp, J.1
Bordoli, L.2
Battey, J.N.3
Kiefer, F.4
Schwede, T.5
-
12
-
-
36749031066
-
Progress from CASP6 to CASP7
-
Kryshtafovych, A., Fidelis, K. & Moult, J. Progress from CASP6 to CASP7. Proteins 69 (Suppl. 8): 194-207 (2007).
-
(2007)
Proteins
, vol.69
, Issue.SUPPL. 8
, pp. 194-207
-
-
Kryshtafovych, A.1
Fidelis, K.2
Moult, J.3
-
13
-
-
3242813635
-
Utility of homology models in the drug discovery process
-
Hillisch, A., Pineda, L.F. & Hilgenfeld, R. Utility of homology models in the drug discovery process. Drug Discov. Today 9, 659-669 (2004).
-
(2004)
Drug Discov. Today
, vol.9
, pp. 659-669
-
-
Hillisch, A.1
Pineda, L.F.2
Hilgenfeld, R.3
-
14
-
-
3142758686
-
Automated protein structure homology modeling: A progress report
-
Kopp, J. & Schwede, T. Automated protein structure homology modeling: A progress report. Pharmacogenomics 5, 405-416 (2004).
-
(2004)
Pharmacogenomics
, vol.5
, pp. 405-416
-
-
Kopp, J.1
Schwede, T.2
-
15
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom, M.A. et al. Comparative protein structure modeling of genes and genomes. Annu. Rev. Biophys. Biomol. Struct. 29, 291-325 (2000).
-
(2000)
Annu. Rev. Biophys. Biomol. Struct
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
-
16
-
-
0036330267
-
About the use of protein models
-
Peitsch, M.C. About the use of protein models. Bioinformatics 18, 934-938 (2002).
-
(2002)
Bioinformatics
, vol.18
, pp. 934-938
-
-
Peitsch, M.C.1
-
17
-
-
61849092610
-
-
eds. Schwede T. & Peitsch M.C, World Scientific Publishing, Singapore
-
Tramontano, A. In Computational Structural Biology (eds. Schwede T. & Peitsch M.C.) (World Scientific Publishing, Singapore, 2008).
-
(2008)
Computational Structural Biology
-
-
Tramontano, A.1
-
18
-
-
0035812694
-
Protein structure prediction and structural genomics
-
Baker, D. & Sali, A. Protein structure prediction and structural genomics. Science 294, 93-96 (2001).
-
(2001)
Science
, vol.294
, pp. 93-96
-
-
Baker, D.1
Sali, A.2
-
19
-
-
38549154569
-
Loop modeling: Sampling, filtering, and scoring
-
Soto, C.S., Fasnacht, M., Zhu, J., Forrest, L. & Honig, B. Loop modeling: Sampling, filtering, and scoring. Proteins 70, 834-843 (2008).
-
(2008)
Proteins
, vol.70
, pp. 834-843
-
-
Soto, C.S.1
Fasnacht, M.2
Zhu, J.3
Forrest, L.4
Honig, B.5
-
20
-
-
2442449534
-
Modeling structurally variable regions in homologous proteins with rosetta
-
Rohl, C.A., Strauss, C.E., Chivian, D. & Baker, D. Modeling structurally variable regions in homologous proteins with rosetta. Proteins 55, 656-677 (2004).
-
(2004)
Proteins
, vol.55
, pp. 656-677
-
-
Rohl, C.A.1
Strauss, C.E.2
Chivian, D.3
Baker, D.4
-
21
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser, A., Do, R.K. & Sali, A. Modeling of loops in protein structures. Protein Sci. 9, 1753-1773 (2000).
-
(2000)
Protein Sci
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
22
-
-
0042511005
-
A graph-theory algorithm for rapid protein side-chain prediction
-
Canutescu, A.A., Shelenkov, A.A. & Dunbrack, R.L. Jr. A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci. 12, 2001-2014 (2003).
-
(2003)
Protein Sci
, vol.12
, pp. 2001-2014
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack Jr., R.L.3
-
23
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost, B. Twilight zone of protein sequence alignments. Protein Eng. 12, 85-94 (1999).
-
(1999)
Protein Eng
, vol.12
, pp. 85-94
-
-
Rost, B.1
-
24
-
-
33744779891
-
Sequence comparison and protein structure prediction
-
Dunbrack, R.L. Jr. Sequence comparison and protein structure prediction. Curr. Opin. Struct. Biol. 16, 374-384 (2006).
-
(2006)
Curr. Opin. Struct. Biol
, vol.16
, pp. 374-384
-
-
Dunbrack Jr., R.L.1
-
25
-
-
33749344929
-
Improving the quality of protein structure models by selecting from alignment alternatives
-
Sommer, I., Toppo, S., Sander, O., Lengauer, T. & Tosatto, S.C. Improving the quality of protein structure models by selecting from alignment alternatives. BMC Bioinformatics 7, 364 (2006).
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 364
-
-
Sommer, I.1
Toppo, S.2
Sander, O.3
Lengauer, T.4
Tosatto, S.C.5
-
26
-
-
0041743084
-
Predicting reliable regions in protein alignments from sequence profiles
-
Tress, M.L., Jones, D. & Valencia, A. Predicting reliable regions in protein alignments from sequence profiles. J. Mol. Biol. 330 705-718 (2003).
-
(2003)
J. Mol. Biol
, vol.330
, pp. 705-718
-
-
Tress, M.L.1
Jones, D.2
Valencia, A.3
-
27
-
-
0029995476
-
Near-optimal sequence alignment
-
Vingron, M. Near-optimal sequence alignment. Curr. Opin. Struct. Biol. 6, 346-352 (1996).
-
(1996)
Curr. Opin. Struct. Biol
, vol.6
, pp. 346-352
-
-
Vingron, M.1
-
28
-
-
0032540222
-
Assessing protein structures with a non-local atomic interaction energy
-
Melo, F. & Feytmans, E. Assessing protein structures with a non-local atomic interaction energy. J. Mol. Biol. 277, 1141-1152 (1998).
-
(1998)
J. Mol. Biol
, vol.277
, pp. 1141-1152
-
-
Melo, F.1
Feytmans, E.2
-
29
-
-
0025341310
-
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins
-
Sippl, M.J. Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. J. Mol. Biol. 213, 859-883 (1990).
-
(1990)
J. Mol. Biol
, vol.213
, pp. 859-883
-
-
Sippl, M.J.1
-
30
-
-
0036838311
-
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
-
Zhou, H. & Zhou, Y. Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction. Protein Sci. 11, 2714-2726 (2002).
-
(2002)
Protein Sci
, vol.11
, pp. 2714-2726
-
-
Zhou, H.1
Zhou, Y.2
-
31
-
-
34547576789
-
Local quality assessment in homology models using statistical potentials and support vector machines
-
Fasnacht, M., Zhu, J. & Honig, B. Local quality assessment in homology models using statistical potentials and support vector machines. Protein Sci. 16, 1557-1568 (2007).
-
(2007)
Protein Sci
, vol.16
, pp. 1557-1568
-
-
Fasnacht, M.1
Zhu, J.2
Honig, B.3
-
32
-
-
33645504195
-
Identification of correct regions in protein models using structural, alignment, and consensus information
-
Wallner, B. & Elofsson, A. Identification of correct regions in protein models using structural, alignment, and consensus information. Protein Sci. 15, 900-913 (2006).
-
(2006)
Protein Sci
, vol.15
, pp. 900-913
-
-
Wallner, B.1
Elofsson, A.2
-
33
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S. & Thornton, J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 283-291 (1993).
-
(1993)
J. Appl. Cryst
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
34
-
-
0030047142
-
Errors in protein structures
-
Hooft, R.W., Vriend, G., Sander, C. & Abola, E.E. Errors in protein structures. Nature 381, 272 (1996).
-
(1996)
Nature
, vol.381
, pp. 272
-
-
Hooft, R.W.1
Vriend, G.2
Sander, C.3
Abola, E.E.4
-
35
-
-
13844255392
-
Protein complexes: Structure prediction challenges for the 21st century
-
Aloy, P., Pichaud, M. & Russell, R.B. Protein complexes: Structure prediction challenges for the 21st century. Curr. Opin. Struct. Biol. 15, 15-22 (2005).
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 15-22
-
-
Aloy, P.1
Pichaud, M.2
Russell, R.B.3
-
36
-
-
36749088906
-
Determining the architectures of macromolecular assemblies
-
Alber, F. et al. Determining the architectures of macromolecular assemblies. Nature 450, 683-694 (2007).
-
(2007)
Nature
, vol.450
, pp. 683-694
-
-
Alber, F.1
-
37
-
-
33748300566
-
The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability
-
Junne, T., Schwede, T., Goder, V. & Spiess, M. The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability. Mol. Biol. Cell 17, 4063-4068 (2006).
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 4063-4068
-
-
Junne, T.1
Schwede, T.2
Goder, V.3
Spiess, M.4
-
38
-
-
36749103110
-
Automated server predictions in CASP7
-
Battey, J.N. et al. Automated server predictions in CASP7. Proteins 69 (Suppl. 8): 68-82 (2007).
-
(2007)
Proteins
, vol.69
, Issue.SUPPL. 8
, pp. 68-82
-
-
Battey, J.N.1
-
39
-
-
0043123211
-
EVA: Evaluation of protein structure prediction servers
-
Koh, I.Y. et al. EVA: Evaluation of protein structure prediction servers. Nucleic Acids. Res. 31, 3311-3315 (2003).
-
(2003)
Nucleic Acids. Res
, vol.31
, pp. 3311-3315
-
-
Koh, I.Y.1
-
40
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
Arnold, K., Bordoli, L., Kopp, J. & Schwede, T. The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling. Bioinformatics 22, 195-201 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
41
-
-
0043123167
-
Tools for comparative protein structure modeling and analysis
-
Eswar, N. et al. Tools for comparative protein structure modeling and analysis. Nucleic Acids. Res. 31, 3375-3380 (2003).
-
(2003)
Nucleic Acids. Res
, vol.31
, pp. 3375-3380
-
-
Eswar, N.1
-
42
-
-
0035747672
-
Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM
-
Bates, P.A., Kelley, L.A., MacCallum, R.M. & Sternberg, M.J. Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins (Suppl. 5): 39-46 (2001).
-
(2001)
Proteins
, Issue.SUPPL. 5
, pp. 39-46
-
-
Bates, P.A.1
Kelley, L.A.2
MacCallum, R.M.3
Sternberg, M.J.4
-
43
-
-
34547574147
-
-
Fernandez-Fuentes, N., Madrid-Aliste, C.J., Rai, B.K., Fajardo, J.E. & Fiser, A. M4T: A comparative protein structure modeling server. Nucleic Acids Res. 35, W363-W368 (2007).
-
Fernandez-Fuentes, N., Madrid-Aliste, C.J., Rai, B.K., Fajardo, J.E. & Fiser, A. M4T: A comparative protein structure modeling server. Nucleic Acids Res. 35, W363-W368 (2007).
-
-
-
-
44
-
-
34547555664
-
Conducting research on the web: 2007 update for the bioinformatics links directory
-
Fox, J.A., McMillan, S. & Ouellette, B.F. Conducting research on the web: 2007 update for the bioinformatics links directory. Nucleic Acids Res. 35, W3-W5 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Fox, J.A.1
McMillan, S.2
Ouellette, B.F.3
-
45
-
-
0034096904
-
Protein structure computing in the genomic era
-
Schwede, T., Diemand, A., Guex, N. & Peitsch, M.C. Protein structure computing in the genomic era. Res. Microbiol. 151, 107-112 (2000).
-
(2000)
Res. Microbiol
, vol.151
, pp. 107-112
-
-
Schwede, T.1
Diemand, A.2
Guex, N.3
Peitsch, M.C.4
-
46
-
-
0348062818
-
The SWISS-MODEL repository of annotated three-dimensional protein structure homology models
-
Kopp, J. & Schwede, T. The SWISS-MODEL repository of annotated three-dimensional protein structure homology models. Nucleic Acids Res. 32, D230-D234 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kopp, J.1
Schwede, T.2
-
47
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
Schwede, T., Kopp, J., Guex, N. & Peitsch, M.C. SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res. 31, 3381-3385 (2003).
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
48
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex, N. & Peitsch, M.C. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18, 2714-2723 (1997).
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
49
-
-
0346494941
-
SCOP database in 2004: Refinements integrate structure and sequence family data
-
Andreeva, A. et al. SCOP database in 2004: Refinements integrate structure and sequence family data. Nucleic Acids Res. 32, D226-D229 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Andreeva, A.1
-
50
-
-
33846033844
-
The CATH domain structure database: New protocols and classification levels give a more comprehensive resource for exploring evolution
-
Greene, L.H. et al. The CATH domain structure database: New protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Res. 35, D291-D297 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Greene, L.H.1
-
51
-
-
38549146894
-
The Pfam protein families database
-
Finn, R.D. et al. The Pfam protein families database. Nucleic Acids Res. 36, D281-D288 (2008).
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
-
52
-
-
0034800374
-
InterProScan - an integration platform for the signature-recognition methods in InterPro
-
Zdobnov, E.M. & Apweiler, R. InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17, 847-848 (2001).
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
53
-
-
33846116032
-
New developments in the InterPro database
-
Mulder, N.J. et al. New developments in the InterPro database. Nucleic Acids Res. 35, D224-228 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Mulder, N.J.1
-
54
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones, D.T. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292, 195-202 (1999).
-
(1999)
J. Mol. Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
55
-
-
0242362157
-
Prediction of disordered regions in proteins from position specific score matrices
-
Jones, D.T. & Ward, J.J. Prediction of disordered regions in proteins from position specific score matrices. Proteins 53 (Suppl. 6): 573-578 (2003).
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 573-578
-
-
Jones, D.T.1
Ward, J.J.2
-
56
-
-
0028211273
-
A model recognition approach to the prediction of all-helical membrane protein structure and topology
-
Jones, D.T., Taylor, W.R. & Thornton, J.M. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry 33, 3038-3049 (1994).
-
(1994)
Biochemistry
, vol.33
, pp. 3038-3049
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
57
-
-
13844255387
-
Natively unfolded proteins
-
Fink, A.L. Natively unfolded proteins. Curr. Opin. Struct. Biol. 15, 35-41 (2005).
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 35-41
-
-
Fink, A.L.1
-
58
-
-
33847795359
-
Intrinsic disorder and functional proteomics
-
Radivojac, P. et al. Intrinsic disorder and functional proteomics. Biophys. J. 92, 1439-1456 (2007).
-
(2007)
Biophys. J
, vol.92
, pp. 1439-1456
-
-
Radivojac, P.1
-
59
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson, H.J. & Wright, P.E. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 6, 197-208 (2005).
-
(2005)
Nat. Rev. Mol. Cell Biol
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
60
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F. et al. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
61
-
-
13444293344
-
-
Wheeler, D.L. et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 33 Database Issue: D39-D45 (2005).
-
Wheeler, D.L. et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 33 Database Issue: D39-D45 (2005).
-
-
-
-
62
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
Soding, J. Protein homology detection by HMM-HMM comparison. Bioinformatics 21, 951-960 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Soding, J.1
-
63
-
-
0029644168
-
Adenylate kinase motions during catalysis: An energetic counterweight balancing substrate binding
-
Muller, C.W., Schlauderer, G.J., Reinstein, J. & Schulz, G.E. Adenylate kinase motions during catalysis: An energetic counterweight balancing substrate binding. Structure 4, 147-156 (1996).
-
(1996)
Structure
, vol.4
, pp. 147-156
-
-
Muller, C.W.1
Schlauderer, G.J.2
Reinstein, J.3
Schulz, G.E.4
-
64
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Söding, J., Biegert, A. & Lupas, A.N. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33, W244-248 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Söding, J.1
Biegert, A.2
Lupas, A.N.3
-
65
-
-
40549141792
-
QMEAN: A comprehensive scoring function for model quality assessment
-
Benkert, P., Tosatto, S.C. & Schomburg, D. QMEAN: A comprehensive scoring function for model quality assessment. Proteins 71, 261-277 (2008).
-
(2008)
Proteins
, vol.71
, pp. 261-277
-
-
Benkert, P.1
Tosatto, S.C.2
Schomburg, D.3
-
66
-
-
61849105975
-
-
van Gunsteren, W.F. et al. Biomolecular Simulations: The GROMOS96 Manual and User Guide (VdF Hochschulverlag ETHZ, Zürich, 1996).
-
van Gunsteren, W.F. et al. Biomolecular Simulations: The GROMOS96 Manual and User Guide (VdF Hochschulverlag ETHZ, Zürich, 1996).
-
-
-
-
67
-
-
9144257886
-
The Pfam protein families database
-
Bateman, A. et al. The Pfam protein families database. Nucleic Acids Res. 32, D138-D141 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
-
68
-
-
33644876022
-
The PROSITE database
-
Hulo, N. et al. The PROSITE database. Nucleic Acids Res. 34, D227-D230 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Hulo, N.1
-
69
-
-
0042342532
-
A mechanistic perspective on the chemistry of DNA repair glycosylases
-
Stivers, J.T. & Jiang, Y.L. A mechanistic perspective on the chemistry of DNA repair glycosylases. Chem. Rev. 103, 2729-2759 (2003).
-
(2003)
Chem. Rev
, vol.103
, pp. 2729-2759
-
-
Stivers, J.T.1
Jiang, Y.L.2
-
70
-
-
0028857681
-
The base excision repair pathway
-
Seeberg, E., Eide, L. & Bjoras, M. The base excision repair pathway. Trends Biochem. Sci. 20, 391-397 (1995).
-
(1995)
Trends Biochem. Sci
, vol.20
, pp. 391-397
-
-
Seeberg, E.1
Eide, L.2
Bjoras, M.3
-
71
-
-
33645057457
-
A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD
-
Alseth, I. et al. A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD. Mol. Microbiol. 59, 1602-1609 (2006).
-
(2006)
Mol. Microbiol
, vol.59
, pp. 1602-1609
-
-
Alseth, I.1
-
72
-
-
0033150672
-
Topological characteristics of helical repeat proteins
-
Groves, M.R. & Barford, D. Topological characteristics of helical repeat proteins. Curr. Opin. Struct. Biol. 9, 383-389 (1999).
-
(1999)
Curr. Opin. Struct. Biol
, vol.9
, pp. 383-389
-
-
Groves, M.R.1
Barford, D.2
-
73
-
-
34249862768
-
Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats
-
Dalhus, B. et al. Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats. Nucleic Acids Res. 35, 2451-2459 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2451-2459
-
-
Dalhus, B.1
-
74
-
-
0026492148
-
Membrane phospholipid degradation and protein kinase C for cell signalling
-
Nishizuka, Y. Membrane phospholipid degradation and protein kinase C for cell signalling. Neurosci. Res. 15, 3-5 (1992).
-
(1992)
Neurosci. Res
, vol.15
, pp. 3-5
-
-
Nishizuka, Y.1
-
75
-
-
0032104245
-
The extended protein kinase C superfamily
-
Mellor, H. & Parker, P.J. The extended protein kinase C superfamily. Biochem. J. 332 (Part 2): 281-292 (1998).
-
(1998)
Biochem. J
, vol.332
, Issue.PART 2
, pp. 281-292
-
-
Mellor, H.1
Parker, P.J.2
-
76
-
-
0028979464
-
Crystal structure of the cys2 activator-binding domain of protein kinase C delta in complex with phorbol ester
-
Zhang, G., Kazanietz, M.G., Blumberg, P.M. & Hurley, J.H. Crystal structure of the cys2 activator-binding domain of protein kinase C delta in complex with phorbol ester. Cell 81, 917-924 (1995).
-
(1995)
Cell
, vol.81
, pp. 917-924
-
-
Zhang, G.1
Kazanietz, M.G.2
Blumberg, P.M.3
Hurley, J.H.4
-
77
-
-
0032169688
-
PQS: A protein quaternary structure file server
-
Henrick, K. & Thornton, J.M. PQS: A protein quaternary structure file server. Trends Biochem. Sci. 23, 358-361 (1998).
-
(1998)
Trends Biochem. Sci
, vol.23
, pp. 358-361
-
-
Henrick, K.1
Thornton, J.M.2
-
78
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E. & Henrick, K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797 (2007).
-
(2007)
J. Mol. Biol
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
|