Strength of hydrogen bonds in α helices

Journal of Computational Chemistry

Volumn 18, Issue 9, 1997, Pages 1245-1252

  Arora, Nidhi ^a   Jayaram, B ^a  

^a INDIAN INSTITUTE OF TECHNOLOGY DELHI   (India)

Author keywords

Energetics; Hydrogen bonding; Protein folding; helix stability

Indexed keywords

EID: 0000550720     PISSN: 01928651     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1096-987X(19970715)18:9<1245::AID-JCC12>3.0.CO;2-4     Document Type: Article

References (43)

1. G. C. Pimentel and A. I. McClellan, In The Hydrogen Bond, W. H. Freeman and Company, San Francisco and London, 1960.
2. K. A. Dill, Biochemistry, 29, 7133 (1990).
3. A. E. Mirsky and L. Pauling, Proc. Natl. Acad. SCi., USA, 22, 439 (1936).
4. K. U. Linderstonn-Lang, In Lane Medical Lectures, Vol. 6, Stanford Univ. Press, Stanford, CA, 1952, p. 53.
5. L. Pauling and R. B. Corey, Proc. Natl. Acad. SCI., USA, 37, 235 (1951).
6. L. Pauling, R. B. Corey and H. R. Branson, Proc. Natl. Acad. SCi., USA, 37, 205 (1951).
7. L. Pauling, In The Nature of the Chemical Bond, 3rd ed., Cornell University Press, Ithaca, NY, 1960, p. 498.
8. E. N. Baker and R. E. Hubbard, Prog. Biophys. Mol. Biol., 44, 97 (1984).
9. D. F. Stickle, L. G. Presta, K. A. Dill, and G. D. Rose, J. Mol. Biol, 226, 1143 (1992).
10. J. A. Schellman, Compt. Rend. Trav. Lab. Carlsberg Ser. Chim., 29, 223 (1955).
11. J. A. Schellman, J. Phys. Chem., 62, 1485 (1958).
12. S. I. Mizushima, T. Shimanouchi, M. Tsuboi, and T. Arakawa, J. Am. Chem. Soc., 79, 5357 (1957).
13. I. M. Klotz and J. S. Franzen, J. Am. Chem. Soc., 84, 3461 (1962).
14. J. N. Spencer, R. C. Garrett, F. J. Meyer, J. E. Merkle, C. R. Powell, M. T. Tran, and S. K. Berger, Can. J. Chem., 58, 1372 (1980).
15. W. L. Jorgensen, J. Am. Chem. Soc., 111, 3770 (1989).
16. J. M. Scholtz, S. Marqusee, R. L. Baldwin, E. J. York, J. M. Stewart, M. Santoro, and D. W. Bolen, Proc. Natl. Acad. Sci., USA, 88, 2854 (1991).
17. T. Ooi and M. Oobatake, Proc. Natl. Acad. Sci., USA, 88, 2859 (1991).
18. A. Ben Naim, J. Phys. Chem., 95, 1437 (1991).
19. A. R. Fersht and L. Serrano, Curr. Opin. Struct. Biol., 3, 75 (1993).
20. B. A. Shirley, P. Stranssens, U. Hahn, and C. N. Pace, Biochemistry, 31, 725 (1992).
21. C. N. Pace, B. A. Shirley, M. McNutt, and K. Gajiwala, FASEB J., 10, 75 (1996).
22. B. Honig and A. Nicholls, Science, 268, 1144 (1995).
23. A. Yang and B. Honig, J. Mol. Biol., 252, 351 (1995).
24. K. Osapay, W. S. Young, D. Bashford, C. L. Brooks III, and D. A. Case, J. Phys. Chem., 100, 2698 (1996).
25. M. Vasquez, G. Nemethy, and H. A. Scheraga, Chem. Rev., 94, 2183 (1994).
26. T. J. Marrone, M. K. Gilson, and J. A. McCammon, J. Phys. Chem., 100, 1439 (1996).
27. B. Jayaram, A. Das, and N. Aneja, J. Mol. Struct. (THEOCHEM), 361, 249 (1996).
28. B. Jayaram, In Proceedings of the Ninth Conversation in Biomolecular Stereodynamics, R. H. Sarma, Ed., Adenine Press, New York, 1995; Biol. Struct. Dynam., 1, 109 (1996).
29. B. Jayaram, In Proceedings of the Ninth Conversation in Biomolecular Stereodynamics, R. H. Sarma, Ed., Adenine Press, New York, 1995; Biol. Struct. Dynam., 1, 109 (1996).
30. N. Arora and B. Jayaram, Biopolymers, manuscript under revision.
31. Insight II, version 2.3.0, Delphi version 2.5, Biosym Technologies, San Diego, CA, 1993; implemented on a Silicon Graphics Indigo workstation at UT Delhi, India.
32. G. E. Schultz and R. H. Schirmer, In Principles of Protein Structure, Springer-Verlag, New York, 1979, p. 18.
33. W. D. Cornell, P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, Jr., D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell, and P. A. Kollman, J. Am. Chem. Soc., 117, 5179 (1995).
34. B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus, J. Comput. Chem., 4, 187 (1983).
35. F. A. Momany, L. M. Carruthers, R. F. McGuire, and H. A. Scheraga, J. Phys. Chem., 78, 1595 (1974).
36. F. A. Momany, R. F. McGuire, A. W. Burgess, and H. A. Scheraga, J. Phys. Chem., 79, 2361 (1975).
37. (a) W. F. van Gunsteren and H. J. C. Berendsen, Groningen Molecular Simulation (GROMOS) Library Manual, Biomos, Groningen, The Netherlands, 1987
38. (b) W. F. van Gunsteren, Intensive Course on Molecular Modelling: Drug Design and Biomolecular Systems, conducted at CMMACS, Bangalore, India, Oct. 9-13, 1995.
39. W. L. Jorgensen and J. Tirado-Rives, J. Am. Chem. Soc., 110, 1657 (1988).
40. B. E. Hingerty, R. H. Richie, T. L. Ferrell, and J. E. Turner, Biopolymers, 24, 427 (1985).
41. J. Ramstein and R. Lavery, Proc. Natl. Acad. Sci. USA, 85, 7231 (1988).
42. J. C. Slater and J. G. Kirkwood, Phys. Rev., 37, 682 (1931).
43. J. B. O. Mitchell and S. L. Price, J. Comput. Chem., 11, 1217 (1990).