Confidence measures for protein fold recognition

Bioinformatics

Volumn 18, Issue 6, 2002, Pages 802-812

  Sommer, Ingolf ^a   Zien, Alexander ^a   Von Öhsen, Niklas ^a   Zimmer, Ralf ^a   Lengauer, Thomas ^a  

^a FRAUNHOFER INSTITUTE FOR ALGORITHMS AND SCIENTIFIC COMPUTING SCAI   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONFIDENCE INTERVAL; CONTROLLED STUDY; INTERMETHOD COMPARISON; MATHEMATICAL COMPUTING; MOLECULAR RECOGNITION; PREDICTION; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STRUCTURE; SCORING SYSTEM; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STATISTICAL ANALYSIS;

EID: 0036305769     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.6.802     Document Type: Article

References (29)

1. Fast protein fold recognition via sequence to structure alignment and contact capacity potentials
2. Local alignment statistics
3. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
4. Amino acid substitution matrices from an information theoretic perspective
5. A phase transition for the score in matching random sequences allowing deletions
6. Assessing the accuracy of prediction algorithms for classification: An overview
7. Protein structure prediction
8. Correct structure prediction?
9. The protein data bank
10. The ASTRAL compendium for protein structure and sequence analysis
11. Evaluation of current techniques for ab initio protein structure prediction
12. CAFASP-1: Critical assessment of fully automated structure prediction methods
13. The 2000 Olympic Games of protein structure prediction; Fully automated programs are being evaluated vis-a-vis human teams in the protein structure prediction experiment CAFASP2
14. An improved algorithm for matching biological sequences
15. Profile analysis: Detection of distantly related proteins
16. Position-based sequence weights
17. Progress in protein structure prediction
18. KIND-a non-redundant protein database
19. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
20. Maximum entropy weighting of aligned sequences of protein or DNA
21. A unified statistical framework for sequence comparison and structure comparison
22. Accurate formula for p-values of gapped local sequence and profile alignments
23. SCOP: A structural classification of proteins database for the investigation of sequences and structures
24. Sequence comparisons using multiple sequences detect twice as many remote homologues as pairwise methods
25. Empirical statistical estimates for sequence similarity searches
26. Identification of common molecular subsequences
27. Improving profile-profile alignment via log average scoring
28. Rapid and accurate estimates of statistical significance for sequence base searches
29. A simple iterative approach to parameter optimization