-
1
-
-
0002543237
-
Fundamental dimensions of polypeptide chains
-
Corey R.B., Pauling L. Fundamental dimensions of polypeptide chains. Proc. Roy. Soc. Lond. 141:1953;10
-
(1953)
Proc. Roy. Soc. Lond.
, vol.141
, pp. 10
-
-
Corey, R.B.1
Pauling, L.2
-
2
-
-
0022701772
-
Using known substructures in protein model building and crystallography
-
Jones T.A., Thirup S. Using known substructures in protein model building and crystallography. EMBO J. 5:1986;819-822
-
(1986)
EMBO J.
, vol.5
, pp. 819-822
-
-
Jones, T.A.1
Thirup, S.2
-
3
-
-
0029619259
-
Knowledge-based protein secondary structure assignment
-
Frishman D., Argos P. Knowledge-based protein secondary structure assignment. Proteins: Struct. Funct. Genet. 23:1995;566-579
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.23
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
4
-
-
0036568279
-
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
-
Pollastri G., Prezybylski D., Rost B., Baldi P. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins: Struct. Funct. Genet. 47:2002;228-235
-
(2002)
Proteins: Struct. Funct. Genet.
, vol.47
, pp. 228-235
-
-
Pollastri, G.1
Prezybylski, D.2
Rost, B.3
Baldi, P.4
-
5
-
-
0031557395
-
An automated classification and analysis of the structure of protein loop
-
Oliva B., Bates P.A., Querol E., Avils F.X., Sternberg M.J.E. An automated classification and analysis of the structure of protein loop. J. Mol. Biol. 266:1997;814-830
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 814-830
-
-
Oliva, B.1
Bates, P.A.2
Querol, E.3
Avils, F.X.4
Sternberg, M.J.E.5
-
6
-
-
0033603394
-
New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification
-
Wojcik J., Mornon J.P., Chomilier J. New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification. J. Mol. Biol. 89:1999;1469-1490
-
(1999)
J. Mol. Biol.
, vol.89
, pp. 1469-1490
-
-
Wojcik, J.1
Mornon, J.P.2
Chomilier, J.3
-
7
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser A., Do R.K., Sali A. Modeling of loops in protein structures. Protein Sci. 9:2000;1753-1773
-
(2000)
Protein Sci.
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
8
-
-
0027645984
-
The importance of short structural motifs in protein structure analysis
-
Unger R., Sussman J.L. The importance of short structural motifs in protein structure analysis. J. Comput. Aided Mol. Des. 7:1993;457-472
-
(1993)
J. Comput. Aided Mol. Des.
, vol.7
, pp. 457-472
-
-
Unger, R.1
Sussman, J.L.2
-
9
-
-
0031660702
-
Geometrical and sequence characteristics of alpha-helices in globular proteins
-
Kumar S., Bansal M. Geometrical and sequence characteristics of alpha-helices in globular proteins. Biophys. J. 75:1998;1935-1944
-
(1998)
Biophys. J.
, vol.75
, pp. 1935-1944
-
-
Kumar, S.1
Bansal, M.2
-
12
-
-
0025326949
-
Automatic definition of recurrent local structure motifs in proteins
-
Rooman M.J., Rodriguez J., Wodak S.J. Automatic definition of recurrent local structure motifs in proteins. J. Mol. Biol. 213:1990;327-336
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 327-336
-
-
Rooman, M.J.1
Rodriguez, J.2
Wodak, S.J.3
-
13
-
-
0026469666
-
Generation of a substructure library for the description and classification of protein secondary structure. I. Overview of the methods and results
-
Prestrelski S.J., Williams A.L. Jr, Liebman M.N. Generation of a substructure library for the description and classification of protein secondary structure. I. Overview of the methods and results. Proteins: Struct. Funct. Genet. 14:1992;430-439
-
(1992)
Proteins: Struct. Funct. Genet.
, vol.14
, pp. 430-439
-
-
Prestrelski, S.J.1
Williams Jr., A.L.2
Liebman, M.N.3
-
14
-
-
0026754015
-
Accurate modeling of protein conformation by automatic segment matching
-
Levitt M. Accurate modeling of protein conformation by automatic segment matching. J. Mol. Biol. 226:1992;507-533
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 507-533
-
-
Levitt, M.1
-
15
-
-
0029860175
-
Local structural motifs of proteins backbones are classified by self-organizing neural networks
-
Schuchhardt J., Schneider G., Reichelt J., Schomburg D., Wrede P. Local structural motifs of proteins backbones are classified by self-organizing neural networks. Protein Eng. 9:1996;833-842
-
(1996)
Protein Eng.
, vol.9
, pp. 833-842
-
-
Schuchhardt, J.1
Schneider, G.2
Reichelt, J.3
Schomburg, D.4
Wrede, P.5
-
16
-
-
0031052447
-
Patterns, structures, and amino acid frequencies in structural building blocks, a protein secondary structure classification scheme
-
Fetrow J.S., Palumbo M.J., Berg G. Patterns, structures, and amino acid frequencies in structural building blocks, a protein secondary structure classification scheme. Proteins: Struct. Funct. Genet. 27:1997;249-271
-
(1997)
Proteins: Struct. Funct. Genet.
, vol.27
, pp. 249-271
-
-
Fetrow, J.S.1
Palumbo, M.J.2
Berg, G.3
-
17
-
-
0032555696
-
Prediction of local structure in proteins using a library of sequence-structure motifs
-
Bystroff C., Baker D. Prediction of local structure in proteins using a library of sequence-structure motifs. J. Mol. Biol. 281:1998;565-577
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 565-577
-
-
Bystroff, C.1
Baker, D.2
-
18
-
-
0034669774
-
Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks
-
de Brevern A.G., Etchebest C., Hazout S. Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks. Proteins: Struct. Funct. Genet. 41:2000;271-287
-
(2000)
Proteins: Struct. Funct. Genet.
, vol.41
, pp. 271-287
-
-
De Brevern, A.G.1
Etchebest, C.2
Hazout, S.3
-
19
-
-
0034284383
-
Recurrent oligomers in proteins: An optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies
-
Micheletti C., Seno F., Maritan A. Recurrent oligomers in proteins: an optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies. Proteins: Struct. Funct. Genet. 40:2000;662-674
-
(2000)
Proteins: Struct. Funct. Genet.
, vol.40
, pp. 662-674
-
-
Micheletti, C.1
Seno, F.2
Maritan, A.3
-
20
-
-
0036406112
-
Small libraries of protein fragments model native protein structures accurately
-
Kolodny R., Koehl P., Guibas L., Levitt M. Small libraries of protein fragments model native protein structures accurately. J. Mol. Biol. 323:2002;297-307
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 297-307
-
-
Kolodny, R.1
Koehl, P.2
Guibas, L.3
Levitt, M.4
-
22
-
-
0033405214
-
Hidden Markov model approach for identifying the modular framework of the protein backbone
-
Camproux A.C., Tuffery P., Chevrolat J.P., Boisvieux J.F., Hazout S. Hidden Markov model approach for identifying the modular framework of the protein backbone. Protein Eng. 12:1999;1063-1073
-
(1999)
Protein Eng.
, vol.12
, pp. 1063-1073
-
-
Camproux, A.C.1
Tuffery, P.2
Chevrolat, J.P.3
Boisvieux, J.F.4
Hazout, S.5
-
23
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Rabiner L.R. A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE. 77:1989;257-285
-
(1989)
Proc. IEEE
, vol.77
, pp. 257-285
-
-
Rabiner, L.R.1
-
24
-
-
0026351935
-
Conformation of beta hairpins in protein structures: Classification and diversity in homologous structures
-
Sibanda B.L., Thornton J.M. Conformation of beta hairpins in protein structures: classification and diversity in homologous structures. Methods Enzymol. 202:1991;59-82
-
(1991)
Methods Enzymol.
, vol.202
, pp. 59-82
-
-
Sibanda, B.L.1
Thornton, J.M.2
-
25
-
-
0030595369
-
Analysis of domain structural class using an automated class assignment protocol
-
Michie A.D., Orengo C.A., Thornton J.M. Analysis of domain structural class using an automated class assignment protocol. J. Mol. Biol. 262:1996;168-185
-
(1996)
J. Mol. Biol.
, vol.262
, pp. 168-185
-
-
Michie, A.D.1
Orengo, C.A.2
Thornton, J.M.3
-
26
-
-
0037246767
-
The CATH database: An extended protein family resource for structural and functional genomics
-
Pearl F.M., Bennett C.F., Bray J.E., Harrison A.P., Martin N., Shepherd A., et al. The CATH database: an extended protein family resource for structural and functional genomics. Nucl. Acids Res. 31:2003;452-455
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 452-455
-
-
Pearl, F.M.1
Bennett, C.F.2
Bray, J.E.3
Harrison, A.P.4
Martin, N.5
Shepherd, A.6
-
27
-
-
0029063717
-
The complexity and accuracy of discrete state models of protein structure
-
Park B.H., Levitt M. The complexity and accuracy of discrete state models of protein structure. J. Mol. Biol. 249:1995;493-507
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 493-507
-
-
Park, B.H.1
Levitt, M.2
-
28
-
-
0037907566
-
Reducing the computational complexity of protein folding via fragment folding and assembly
-
Haspel N., Tsai C.J., Wolfson H., Nussinov R. Reducing the computational complexity of protein folding via fragment folding and assembly. Protein Sci. 12:2003;1177-1187
-
(2003)
Protein Sci.
, vol.12
, pp. 1177-1187
-
-
Haspel, N.1
Tsai, C.J.2
Wolfson, H.3
Nussinov, R.4
-
29
-
-
0034604368
-
HMMSTR: A hidden Markov model for local sequence-structure correlations in proteins
-
Bystroff C., Thorsson V., Baker D. HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins. J. Mol. Biol. 301:2000;173-190
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 173-190
-
-
Bystroff, C.1
Thorsson, V.2
Baker, D.3
-
30
-
-
0043222570
-
Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA
-
Bystroff C., Shao Y. Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA. Bioinformatics. 18:2002;S54-S61
-
(2002)
Bioinformatics
, vol.18
-
-
Bystroff, C.1
Shao, Y.2
-
32
-
-
0035703089
-
Rosetta in CASP4: Progress in ab initio protein structure prediction
-
Bonneau R., Tsai J., Ruczinki I., Chivian D., Rohl C., Strauss C.E.M., Baker D. Rosetta in CASP4: progress in ab initio protein structure prediction. Proteins: Struct. Funct. Genet. 37:2001;119-126
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.37
, pp. 119-126
-
-
Bonneau, R.1
Tsai, J.2
Ruczinki, I.3
Chivian, D.4
Rohl, C.5
Strauss, C.E.M.6
Baker, D.7
-
33
-
-
0035588264
-
Exploring the use of a structural alphabet for structural prediction of protein loops
-
Camproux A.C., de Brevern A.G., Hazout S., Tuffery P. Exploring the use of a structural alphabet for structural prediction of protein loops. Theor. Chem. Accts. 106:2001;28-35
-
(2001)
Theor. Chem. Accts.
, vol.106
, pp. 28-35
-
-
Camproux, A.C.1
De Brevern, A.G.2
Hazout, S.3
Tuffery, P.4
-
34
-
-
0036893073
-
Extension of a local backbone description using a structural alphabet: A new approach to the sequence-structure relationship
-
de Brevern A.G., Valadie H., Hazout S., Etchebest C. Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship. Protein Sci. 11:2002;2871-2886
-
(2002)
Protein Sci.
, vol.11
, pp. 2871-2886
-
-
De Brevern, A.G.1
Valadie, H.2
Hazout, S.3
Etchebest, C.4
-
35
-
-
0001079105
-
On the use of sequence homologies to predict protein structure: Identical pentapeptides have completely different conformations
-
Kabsch W., Sander C. On the use of sequence homologies to predict protein structure: identical pentapeptides have completely different conformations. Proc. Natl Acad. Sci. USA. 81:1984;1075-1078
-
(1984)
Proc. Natl Acad. Sci. USA
, vol.81
, pp. 1075-1078
-
-
Kabsch, W.1
Sander, C.2
-
36
-
-
0043180474
-
PISCES: A protein sequence culling server
-
Wang C., Dunbrack R.L. Jr. PISCES: a protein sequence culling server. Bioinformatics. 19:2003;1589-1591
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, C.1
Dunbrack Jr., R.L.2
-
37
-
-
0033464218
-
Analyzing patterns between regular secondary structures using short structural building blocks defined by a hidden Markov model
-
Camproux A.C., Tuffery P., Buffat L., Andr C., Boisvieux J.F., Hazout S. Analyzing patterns between regular secondary structures using short structural building blocks defined by a hidden Markov model. Theor. Chem. Accts. 101:1999;33-40
-
(1999)
Theor. Chem. Accts.
, vol.101
, pp. 33-40
-
-
Camproux, A.C.1
Tuffery, P.2
Buffat, L.3
Andr, C.4
Boisvieux, J.F.5
Hazout, S.6
-
38
-
-
0002629270
-
Maximum likelihood estimation from incomplete data via the EM algorithm (with discussion)
-
Dempster A.P., Laird N.M., Rubin D.B. Maximum likelihood estimation from incomplete data via the EM algorithm (with discussion). J. Roy. Stat. Soc. ser. B. 39:1977;1-38
-
(1977)
J. Roy. Stat. Soc. Ser. B
, vol.39
, pp. 1-38
-
-
Dempster, A.P.1
Laird, N.M.2
Rubin, D.B.3
-
39
-
-
0000353178
-
A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains
-
Baum L.E., Petrie T., Soules G., Weiss N. A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains. Ann. Math. Stat. 41:1970;164-171
-
(1970)
Ann. Math. Stat.
, vol.41
, pp. 164-171
-
-
Baum, L.E.1
Petrie, T.2
Soules, G.3
Weiss, N.4
-
40
-
-
0001312813
-
A stochastic approximation type EM algorithm for the mixture problem
-
Celeux G., Diebolt J. A stochastic approximation type EM algorithm for the mixture problem. Stochastics Stochastics Rep. 41:1992;119-134
-
(1992)
Stochastics Stochastics Rep.
, vol.41
, pp. 119-134
-
-
Celeux, G.1
Diebolt, J.2
-
41
-
-
0000120766
-
Estimating the dimension of a model
-
Schwartz G. Estimating the dimension of a model. Ann. Stat. 6:1978;461-464
-
(1978)
Ann. Stat.
, vol.6
, pp. 461-464
-
-
Schwartz, G.1
-
42
-
-
0019598027
-
On some criteria for estimating the order of a Markov chain
-
Katz R.W. On some criteria for estimating the order of a Markov chain. Technometrics. 23:1981;243-249
-
(1981)
Technometrics
, vol.23
, pp. 243-249
-
-
Katz, R.W.1
-
44
-
-
0029239673
-
XmMol: An X11 and motif program for macromolecular visualization and modeling
-
(see also p. 62)
-
Tuffery P. XmMol: an X11 and motif program for macromolecular visualization and modeling. J. Mol. Graph. 13:1995;67-72. (see also p. 62)
-
(1995)
J. Mol. Graph.
, vol.13
, pp. 67-72
-
-
Tuffery, P.1
|