메뉴 건너뛰기




Volumn 38, Issue SUPPL.1, 2009, Pages

The Pfam protein families database

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

EID: 75549090603     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp985     Document Type: Article
Times cited : (2556)

References (24)
  • 1
    • 13444250007 scopus 로고    scopus 로고
    • ADDA: a domain database with global coverage of the protein universe
    • Heger, A., Wilton, C.A., Sivakumar, A. and Holm, L. (2005) ADDA: a domain database with global coverage of the protein universe. Nucleic Acids Res., 33, D188-D191.
    • (2005) Nucleic Acids Res. , vol.33
    • Heger, A.1    Wilton, C.A.2    Sivakumar, A.3    Holm, L.4
  • 6
    • 55749113550 scopus 로고    scopus 로고
    • Profile Comparer: a program for scoring and aligning profile hidden Markov models
    • Madera, M. (2008) Profile Comparer: a program for scoring and aligning profile hidden Markov models. Bioinformatics, 24, 2630-2631.
    • (2008) Bioinformatics , vol.24 , pp. 2630-2631
    • Madera, M.1
  • 7
    • 34248590379 scopus 로고    scopus 로고
    • SCOOP: a simple method for identification of novel protein superfamily relationships
    • Bateman, A. and Finn, R.D. (2007) SCOOP: a simple method for identification of novel protein superfamily relationships. Bioinformatics, 23, 809-814.
    • (2007) Bioinformatics , vol.23 , pp. 809-814
    • Bateman, A.1    Finn, R.D.2
  • 8
    • 36549060028 scopus 로고    scopus 로고
    • Pfam: a domain-centric method for analyzing proteins and proteomes
    • Mistry, J. and Finn, R. (2007) Pfam: a domain-centric method for analyzing proteins and proteomes. Methods Mol. Biol., 396, 43-58.
    • (2007) Methods Mol. Biol. , vol.396 , pp. 43-58
    • Mistry, J.1    Finn, R.2
  • 9
    • 0033957841 scopus 로고    scopus 로고
    • ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons
    • Corpet, F., Servant, F., Gouzy, J. and Kahn, D. (2000) ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res., 28, 267-269.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 267-269
    • Corpet, F.1    Servant, F.2    Gouzy, J.3    Kahn, D.4
  • 12
    • 0033940118 scopus 로고    scopus 로고
    • RSDB: representative protein sequence databases have high information content
    • Park, J., Holm, L., Heger, A. and Chothia, C. (2000) RSDB: representative protein sequence databases have high information content. Bioinformatics, 16, 458-464.
    • (2000) Bioinformatics , vol.16 , pp. 458-464
    • Park, J.1    Holm, L.2    Heger, A.3    Chothia, C.4
  • 14
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent, W.J. (2002) BLAT-the BLAST-like alignment tool. Genome Res., 12, 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 15
    • 0036857358 scopus 로고    scopus 로고
    • QuickTree: building huge Neighbour-Joining trees of protein sequences
    • Howe, K., Bateman, A. and Durbin, R. (2002) QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics, 18, 1546-1547.
    • (2002) Bioinformatics , vol.18 , pp. 1546-1547
    • Howe, K.1    Bateman, A.2    Durbin, R.3
  • 16
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
    • Price, M.N., Dehal, P.S. and Arkin, A.P. (2009) FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. Evol., 26, 1641-1650.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 17
    • 16344373015 scopus 로고    scopus 로고
    • Protein homology detection by HMM-HMM comparison
    • Soding, J. (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics, 21, 951-960.
    • (2005) Bioinformatics , vol.21 , pp. 951-960
    • Soding, J.1
  • 19
    • 35348873256 scopus 로고    scopus 로고
    • Predicting active site residue annotations in the Pfam database
    • Mistry, J., Bateman, A. and Finn, R.D. (2007) Predicting active site residue annotations in the Pfam database. BMC Bioinformatics, 8, 298.
    • (2007) BMC Bioinformatics , vol.8 , pp. 298
    • Mistry, J.1    Bateman, A.2    Finn, R.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.