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Volumn 7, Issue 8, 1998, Pages 1772-1780

Selecting near-native conformations in homology modeling: The role of molecular mechanics and solvation terms

Author keywords

Free energy; Loop closure; Protein conformation; Side chain search

Indexed keywords

ARTICLE; ENTROPY; MOLECULAR DYNAMICS; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE; SOLVATION; STRUCTURE ANALYSIS;

EID: 0032461411     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1002/pro.5560070812     Document Type: Article
Times cited : (17)

References (11)
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  • 2
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    • Solvent accessibility as a predictive tool for the free energy of inhibitor binding to the HIV-1 protease
    • Nauchitel V, Villaverde MC, Sussman F. 1995. Solvent accessibility as a predictive tool for the free energy of inhibitor binding to the HIV-1 protease. Protein Sci 4:1356-1364.
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    • Nauchitel, V.1    Villaverde, M.C.2    Sussman, F.3
  • 4
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    • Protein folding and association - Insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nicholls A, Sharp KA, Honig B. 1991. Protein folding and association - insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins Struct Fund Genet 11:281-296.
    • (1991) Proteins Struct Fund Genet , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.A.2    Honig, B.3
  • 5
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    • On the attribution of binding energy in the antigen-antibody complexes McPC 603, D1.3 and HyHEL-5
    • Novotny J, Bruccoleri RE, Saul FA. 1989. On the attribution of binding energy in the antigen-antibody complexes McPC 603, D1.3 and HyHEL-5. Biochemistry 28:4735-4749.
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    • Novotny, J.1    Bruccoleri, R.E.2    Saul, F.A.3
  • 6
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    • Criteria that discriminate between native proteins and incorrectly folded models
    • Novotny J, Rashin AA, Bruccoleri RE. 1988. Criteria that discriminate between native proteins and incorrectly folded models. Proteins Struct Fund Genet 4:19-30.
    • (1988) Proteins Struct Fund Genet , vol.4 , pp. 19-30
    • Novotny, J.1    Rashin, A.A.2    Bruccoleri, R.E.3
  • 7
    • 0029987862 scopus 로고    scopus 로고
    • Energy functions that discriminate X-ray and near-native folds from well-constructed decoys
    • Park B, Levitt M. 1996. Energy functions that discriminate X-ray and near-native folds from well-constructed decoys. J Mol Biol 255:367-392.
    • (1996) J Mol Biol , vol.255 , pp. 367-392
    • Park, B.1    Levitt, M.2
  • 8
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    • Does conformational free energy distinguish loop conformations in proteins?
    • Pellequer JL, Chen SW. 1997. Does conformational free energy distinguish loop conformations in proteins? Biophys J 73:2359-2315.
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  • 9
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  • 10
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    • Protein structure prediction with a combined solvation free energy-molecular mechanics force-field
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    • Schiffer, C.A.1    Caldwell, J.W.2    Kollman, P.A.3    Stroud, R.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.