-
1
-
-
0025370815
-
Dominant forces in protein folding
-
10.1021/bi00483a001, 2207096
-
Dill KA. Dominant forces in protein folding. Biochemistry 1990, 29(31):7133-7155. 10.1021/bi00483a001, 2207096.
-
(1990)
Biochemistry
, vol.29
, Issue.31
, pp. 7133-7155
-
-
Dill, K.A.1
-
2
-
-
76549252207
-
The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain
-
10.1073/pnas.37.4.205, 1063337, 14816373
-
Pauling L, Corey RB, Branson HR. The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain. Proc Natl Acad Sci USA 1951, 37(4):205-211. 10.1073/pnas.37.4.205, 1063337, 14816373.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.4
, pp. 205-211
-
-
Pauling, L.1
Corey, R.B.2
Branson, H.R.3
-
3
-
-
0004792589
-
Atomic coordinates and structure factors for two helical configurations of polypeptide chains
-
10.1073/pnas.37.5.235, 1063348, 14834145
-
Pauling L, Corey RB. Atomic coordinates and structure factors for two helical configurations of polypeptide chains. Proc Natl Acad Sci USA 1951, 37(5):235-240. 10.1073/pnas.37.5.235, 1063348, 14834145.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.5
, pp. 235-240
-
-
Pauling, L.1
Corey, R.B.2
-
4
-
-
0000839285
-
The structure of synthetic polypeptides
-
10.1073/pnas.37.5.241, 1063349, 14834146
-
Pauling L, Corey RB. The structure of synthetic polypeptides. Proc Natl Acad Sci USA 1951, 37(5):241-250. 10.1073/pnas.37.5.241, 1063349, 14834146.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.5
, pp. 241-250
-
-
Pauling, L.1
Corey, R.B.2
-
5
-
-
76549238253
-
The pleated sheet, a new layer configuration of polypeptide chains
-
10.1073/pnas.37.5.251, 1063350, 14834147
-
Pauling L, Corey RB. The pleated sheet, a new layer configuration of polypeptide chains. Proc Natl Acad Sci USA 1951, 37(5):251-256. 10.1073/pnas.37.5.251, 1063350, 14834147.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.5
, pp. 251-256
-
-
Pauling, L.1
Corey, R.B.2
-
6
-
-
0345138230
-
The structure of feather rachis keratin
-
10.1073/pnas.37.5.256, 1063351, 14834148
-
Pauling L, Corey RB. The structure of feather rachis keratin. Proc Natl Acad Sci USA 1951, 37(5):256-261. 10.1073/pnas.37.5.256, 1063351, 14834148.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.5
, pp. 256-261
-
-
Pauling, L.1
Corey, R.B.2
-
7
-
-
0000013308
-
The structure of hair, muscle, and related proteins
-
10.1073/pnas.37.5.261, 1063352, 14834149
-
Pauling L, Corey RB. The structure of hair, muscle, and related proteins. Proc Natl Acad Sci USA 1951, 37(5):261-271. 10.1073/pnas.37.5.261, 1063352, 14834149.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.5
, pp. 261-271
-
-
Pauling, L.1
Corey, R.B.2
-
8
-
-
0000766709
-
The structure of fibrous proteins of the collagen-gelatin group
-
10.1073/pnas.37.5.272, 1063353, 14834150
-
Pauling L, Corey RB. The structure of fibrous proteins of the collagen-gelatin group. Proc Natl Acad Sci USA 1951, 37(5):272-281. 10.1073/pnas.37.5.272, 1063353, 14834150.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.5
, pp. 272-281
-
-
Pauling, L.1
Corey, R.B.2
-
9
-
-
0006347847
-
The polypeptide-chain configuration in hemoglobin and other globular proteins
-
10.1073/pnas.37.5.282, 1063354, 14834151
-
Pauling L, Corey RB. The polypeptide-chain configuration in hemoglobin and other globular proteins. Proc Natl Acad Sci USA 1951, 37(5):282-285. 10.1073/pnas.37.5.282, 1063354, 14834151.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.5
, pp. 282-285
-
-
Pauling, L.1
Corey, R.B.2
-
10
-
-
0000573263
-
Configurations of Polypeptide Chains With Favored Orientations Around Single Bonds: Two New Pleated Sheets
-
10.1073/pnas.37.11.729, 1063460, 16578412
-
Pauling L, Corey RB. Configurations of Polypeptide Chains With Favored Orientations Around Single Bonds: Two New Pleated Sheets. Proc Natl Acad Sci USA 1951, 37(11):729-740. 10.1073/pnas.37.11.729, 1063460, 16578412.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.11
, pp. 729-740
-
-
Pauling, L.1
Corey, R.B.2
-
11
-
-
0001266102
-
A three-dimensional model of the myoglobin molecule obtained by x-ray analysis
-
10.1038/181662a0, 13517261
-
Kendrew JC, Bodo G, Dintzis HM, Parrish RG, Wyckoff H, Phillips DC. A three-dimensional model of the myoglobin molecule obtained by x-ray analysis. Nature 1958, 181(4610):662-666. 10.1038/181662a0, 13517261.
-
(1958)
Nature
, vol.181
, Issue.4610
, pp. 662-666
-
-
Kendrew, J.C.1
Bodo, G.2
Dintzis, H.M.3
Parrish, R.G.4
Wyckoff, H.5
Phillips, D.C.6
-
13
-
-
0001861319
-
How to Fold Graciously
-
University of Illinois Press, Urbana, IL
-
Levinthal C. How to Fold Graciously. Mossbauer Spectroscopy in Biological Systems: 1969; Allerton House, Monticello, IL 22-24. University of Illinois Press, Urbana, IL.
-
Mossbauer Spectroscopy in Biological Systems: 1969; Allerton House, Monticello, IL
, pp. 22-24
-
-
Levinthal, C.1
-
14
-
-
0037398844
-
Minimalist models for protein folding and design
-
10.1016/S0959-440X(03)00030-7, 12727508
-
Head-Gordon T, Brown S. Minimalist models for protein folding and design. Curr Opin Struct Biol 2003, 13(2):160-167. 10.1016/S0959-440X(03)00030-7, 12727508.
-
(2003)
Curr Opin Struct Biol
, vol.13
, Issue.2
, pp. 160-167
-
-
Head-Gordon, T.1
Brown, S.2
-
15
-
-
17044393884
-
Coarse-grained models for proteins
-
10.1016/j.sbi.2005.02.005, 15837171
-
Tozzini V. Coarse-grained models for proteins. Curr Opin Struct Biol 2005, 15(2):144-150. 10.1016/j.sbi.2005.02.005, 15837171.
-
(2005)
Curr Opin Struct Biol
, vol.15
, Issue.2
, pp. 144-150
-
-
Tozzini, V.1
-
16
-
-
34147169516
-
Potential energy functions for protein design
-
10.1016/j.sbi.2007.03.006, 17387014
-
Boas FE, Harbury PB. Potential energy functions for protein design. Curr Opin Struct Biol 2007, 17(2):199-204. 10.1016/j.sbi.2007.03.006, 17387014.
-
(2007)
Curr Opin Struct Biol
, vol.17
, Issue.2
, pp. 199-204
-
-
Boas, F.E.1
Harbury, P.B.2
-
17
-
-
33746592898
-
Knowledge-based potentials in protein design
-
10.1016/j.sbi.2006.06.013, 16843652
-
Poole AM, Ranganathan R. Knowledge-based potentials in protein design. Curr Opin Struct Biol 2006, 16(4):508-513. 10.1016/j.sbi.2006.06.013, 16843652.
-
(2006)
Curr Opin Struct Biol
, vol.16
, Issue.4
, pp. 508-513
-
-
Poole, A.M.1
Ranganathan, R.2
-
18
-
-
0017021957
-
Medium- and Long-Range Interaction Parameters between Amino Acids for Predicting Three-Dimensional Structures of Proteins
-
10.1021/ma60054a013, 1004017
-
Tanaka S, Scheraga HA. Medium- and Long-Range Interaction Parameters between Amino Acids for Predicting Three-Dimensional Structures of Proteins. Macromolecules 1976, 9(6):945-950. 10.1021/ma60054a013, 1004017.
-
(1976)
Macromolecules
, vol.9
, Issue.6
, pp. 945-950
-
-
Tanaka, S.1
Scheraga, H.A.2
-
19
-
-
0018801078
-
Refined models for computer simulation of protein folding. Applications to the study of conserved secondary structure and flexible hinge points during the folding of pancreatic trypsin inhibitor
-
10.1016/0022-2836(79)90494-7, 513136
-
Robson B, Osguthorpe DJ. Refined models for computer simulation of protein folding. Applications to the study of conserved secondary structure and flexible hinge points during the folding of pancreatic trypsin inhibitor. J Mol Biol 1979, 132(1):19-51. 10.1016/0022-2836(79)90494-7, 513136.
-
(1979)
J Mol Biol
, vol.132
, Issue.1
, pp. 19-51
-
-
Robson, B.1
Osguthorpe, D.J.2
-
20
-
-
33845377127
-
Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation
-
Miyazawa S, Jernigan RL. Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation. Macromolecules 1985, 18(3):534-552.
-
(1985)
Macromolecules
, vol.18
, Issue.3
, pp. 534-552
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
21
-
-
0027318317
-
An empirical energy function for threading protein sequence through the folding motif
-
10.1002/prot.340160110, 8497488
-
Bryant SH, Lawrence CE. An empirical energy function for threading protein sequence through the folding motif. Proteins 1993, 16(1):92-112. 10.1002/prot.340160110, 8497488.
-
(1993)
Proteins
, vol.16
, Issue.1
, pp. 92-112
-
-
Bryant, S.H.1
Lawrence, C.E.2
-
22
-
-
0028892389
-
Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets
-
10.1002/pro.5560041016, 2142984, 8535247
-
Godzik A, Kolinski A, Skolnick J. Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets. Protein Sci 1995, 4(10):2107-2117. 10.1002/pro.5560041016, 2142984, 8535247.
-
(1995)
Protein Sci
, vol.4
, Issue.10
, pp. 2107-2117
-
-
Godzik, A.1
Kolinski, A.2
Skolnick, J.3
-
23
-
-
0030596063
-
How to derive a protein folding potential? A new approach to an old problem
-
10.1006/jmbi.1996.0704, 9000638
-
Mirny LA, Shakhnovich EI. How to derive a protein folding potential? A new approach to an old problem. J Mol Biol 1996, 264(5):1164-1179. 10.1006/jmbi.1996.0704, 9000638.
-
(1996)
J Mol Biol
, vol.264
, Issue.5
, pp. 1164-1179
-
-
Mirny, L.A.1
Shakhnovich, E.I.2
-
24
-
-
0029919190
-
Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading
-
10.1006/jmbi.1996.0114, 8604144
-
Miyazawa S, Jernigan RL. Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading. J Mol Biol 1996, 256(3):623-644. 10.1006/jmbi.1996.0114, 8604144.
-
(1996)
J Mol Biol
, vol.256
, Issue.3
, pp. 623-644
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
25
-
-
0029987862
-
Energy functions that discriminate X-ray and near native folds from well-constructed decoys
-
10.1006/jmbi.1996.0256, 8627632
-
Park B, Levitt M. Energy functions that discriminate X-ray and near native folds from well-constructed decoys. J Mol Biol 1996, 258(2):367-392. 10.1006/jmbi.1996.0256, 8627632.
-
(1996)
J Mol Biol
, vol.258
, Issue.2
, pp. 367-392
-
-
Park, B.1
Levitt, M.2
-
26
-
-
0029909384
-
An iterative method for extracting energy-like quantities from protein structures
-
10.1073/pnas.93.21.11628, 38109, 8876187
-
Thomas PD, Dill KA. An iterative method for extracting energy-like quantities from protein structures. Proc Natl Acad Sci USA 1996, 93(21):11628-11633. 10.1073/pnas.93.21.11628, 38109, 8876187.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, Issue.21
, pp. 11628-11633
-
-
Thomas, P.D.1
Dill, K.A.2
-
27
-
-
0030832809
-
Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches
-
10.1002/(SICI)1097-0134(199711)29:3<292::AID-PROT4>3.0.CO;2-D, 9365985
-
Bahar I, Kaplan M, Jernigan RL. Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches. Proteins 1997, 29(3):292-308. 10.1002/(SICI)1097-0134(199711)29:3<292::AID-PROT4>3.0.CO;2-D, 9365985.
-
(1997)
Proteins
, vol.29
, Issue.3
, pp. 292-308
-
-
Bahar, I.1
Kaplan, M.2
Jernigan, R.L.3
-
28
-
-
0031585984
-
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
-
10.1006/jmbi.1997.0959, 9149153
-
Simons KT, Kooperberg C, Huang E, Baker D. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J Mol Biol 1997, 268(1):209-225. 10.1006/jmbi.1997.0959, 9149153.
-
(1997)
J Mol Biol
, vol.268
, Issue.1
, pp. 209-225
-
-
Simons, K.T.1
Kooperberg, C.2
Huang, E.3
Baker, D.4
-
29
-
-
0030983768
-
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?
-
2143667, 9070450
-
Skolnick J, Jaroszewski L, Kolinski A, Godzik A. Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?. Protein Sci 1997, 6(3):676-688. 2143667, 9070450.
-
(1997)
Protein Sci
, vol.6
, Issue.3
, pp. 676-688
-
-
Skolnick, J.1
Jaroszewski, L.2
Kolinski, A.3
Godzik, A.4
-
30
-
-
0000171351
-
Pairwise contact potentials are unsuitable for protein folding
-
Vendruscolo M, Domany E. Pairwise contact potentials are unsuitable for protein folding. The Journal of Chemical Physics 1998, 109(24):11101-11108.
-
(1998)
The Journal of Chemical Physics
, vol.109
, Issue.24
, pp. 11101-11108
-
-
Vendruscolo, M.1
Domany, E.2
-
31
-
-
0033005899
-
Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes
-
2144252, 10048329
-
Betancourt MR, Thirumalai D. Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes. Protein Sci 1999, 8(2):361-369. 2144252, 10048329.
-
(1999)
Protein Sci
, vol.8
, Issue.2
, pp. 361-369
-
-
Betancourt, M.R.1
Thirumalai, D.2
-
32
-
-
0032960853
-
Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues
-
10.1002/(SICI)1097-0134(19990101)34:1<49::AID-PROT5>3.0.CO;2-L, 10336383
-
Miyazawa S, Jernigan RL. Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues. Proteins 1999, 34(1):49-68. 10.1002/(SICI)1097-0134(19990101)34:1<49::AID-PROT5>3.0.CO;2-L, 10336383.
-
(1999)
Proteins
, vol.34
, Issue.1
, pp. 49-68
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
33
-
-
0032929780
-
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins
-
10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.0.CO;2-A, 10336385
-
Simons KT, Ruczinski I, Kooperberg C, Fox BA, Bystroff C, Baker D. Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins 1999, 34(1):82-95. 10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.0.CO;2-A, 10336385.
-
(1999)
Proteins
, vol.34
, Issue.1
, pp. 82-95
-
-
Simons, K.T.1
Ruczinski, I.2
Kooperberg, C.3
Fox, B.A.4
Bystroff, C.5
Baker, D.6
-
34
-
-
0033970623
-
Derivation of protein-specific pair potentials based on weak sequence fragment similarity
-
10.1002/(SICI)1097-0134(20000101)38:1<3::AID-PROT2>3.0.CO;2-S, 10651034
-
Skolnick J, Kolinski A, Ortiz A. Derivation of protein-specific pair potentials based on weak sequence fragment similarity. Proteins 2000, 38(1):3-16. 10.1002/(SICI)1097-0134(20000101)38:1<3::AID-PROT2>3.0.CO;2-S, 10651034.
-
(2000)
Proteins
, vol.38
, Issue.1
, pp. 3-16
-
-
Skolnick, J.1
Kolinski, A.2
Ortiz, A.3
-
35
-
-
0034237798
-
On the design and analysis of protein folding potentials
-
10.1002/(SICI)1097-0134(20000701)40:1<71::AID-PROT90>3.0.CO;2-3, 10813832
-
Tobi D, Shafran G, Linial N, Elber R. On the design and analysis of protein folding potentials. Proteins 2000, 40(1):71-85. 10.1002/(SICI)1097-0134(20000701)40:1<71::AID-PROT90>3.0.CO;2-3, 10813832.
-
(2000)
Proteins
, vol.40
, Issue.1
, pp. 71-85
-
-
Tobi, D.1
Shafran, G.2
Linial, N.3
Elber, R.4
-
36
-
-
0035427382
-
How to guarantee optimal stability for most representative structures in the Protein Data Bank
-
10.1002/prot.1075, 11391771
-
Bastolla U, Farwer J, Knapp EW, Vendruscolo M. How to guarantee optimal stability for most representative structures in the Protein Data Bank. Proteins 2001, 44(2):79-96. 10.1002/prot.1075, 11391771.
-
(2001)
Proteins
, vol.44
, Issue.2
, pp. 79-96
-
-
Bastolla, U.1
Farwer, J.2
Knapp, E.W.3
Vendruscolo, M.4
-
37
-
-
1842484092
-
Protein fragment reconstruction using various modeling techniques
-
Boniecki M, Rotkiewicz P, Skolnick J, Kolinski A. Protein fragment reconstruction using various modeling techniques. J Comput Aided Mol Des 2003, 17(11):725-738.
-
(2003)
J Comput Aided Mol Des
, vol.17
, Issue.11
, pp. 725-738
-
-
Boniecki, M.1
Rotkiewicz, P.2
Skolnick, J.3
Kolinski, A.4
-
38
-
-
34249938371
-
Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys
-
10.1002/prot.21362, 17393455
-
Feng Y, Kloczkowski A, Jernigan RL. Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys. Proteins 2007, 68(1):57-66. 10.1002/prot.21362, 17393455.
-
(2007)
Proteins
, vol.68
, Issue.1
, pp. 57-66
-
-
Feng, Y.1
Kloczkowski, A.2
Jernigan, R.L.3
-
39
-
-
0026539511
-
Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds
-
10.1016/0022-2836(92)90556-Y, 1569551
-
Casari G, Sippl MJ. Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds. J Mol Biol 1992, 224(3):725-732. 10.1016/0022-2836(92)90556-Y, 1569551.
-
(1992)
J Mol Biol
, vol.224
, Issue.3
, pp. 725-732
-
-
Casari, G.1
Sippl, M.J.2
-
40
-
-
78650958663
-
Backbones of folded proteins reveal novel invariant amino acid neighborhoods
-
Mittal A, Jayaram B. Backbones of folded proteins reveal novel invariant amino acid neighborhoods. J Biomol Struct Dyn 2011, 28(4):443-454.
-
(2011)
J Biomol Struct Dyn
, vol.28
, Issue.4
, pp. 443-454
-
-
Mittal, A.1
Jayaram, B.2
-
41
-
-
77957298312
-
A stoichiometry driven universal spatial organization of backbones of folded proteins: are there Chargaff's rules for protein folding?
-
Mittal A, Jayaram B, Shenoy S, Bawa TS. A stoichiometry driven universal spatial organization of backbones of folded proteins: are there Chargaff's rules for protein folding?. J Biomol Struct Dyn 2010, 28(2):133-142.
-
(2010)
J Biomol Struct Dyn
, vol.28
, Issue.2
, pp. 133-142
-
-
Mittal, A.1
Jayaram, B.2
Shenoy, S.3
Bawa, T.S.4
-
42
-
-
0038060686
-
Anisotropic coarse-grained statistical potentials improve the ability to identify nativelike protein structures
-
Buchete N-V, Straub JE, Thirumalai D. Anisotropic coarse-grained statistical potentials improve the ability to identify nativelike protein structures. The Journal of Chemical Physics 2003, 118(16):7658-7671.
-
(2003)
The Journal of Chemical Physics
, vol.118
, Issue.16
, pp. 7658-7671
-
-
Buchete, N.-V.1
Straub, J.E.2
Thirumalai, D.3
-
43
-
-
34548064535
-
Orientation-dependent potential of mean force for protein folding
-
10.1063/1.1940058, 16035863
-
Mukherjee A, Bhimalapuram P, Bagchi B. Orientation-dependent potential of mean force for protein folding. J Chem Phys 2005, 123(1):014901. 10.1063/1.1940058, 16035863.
-
(2005)
J Chem Phys
, vol.123
, Issue.1
, pp. 014901
-
-
Mukherjee, A.1
Bhimalapuram, P.2
Bagchi, B.3
-
44
-
-
57549110266
-
A knowledge-based structure-discriminating function that requires only main-chain atom coordinates
-
10.1186/1472-6807-8-46, 2600639, 18957132
-
Makino Y, Itoh N. A knowledge-based structure-discriminating function that requires only main-chain atom coordinates. BMC Struct Biol 2008, 8:46. 10.1186/1472-6807-8-46, 2600639, 18957132.
-
(2008)
BMC Struct Biol
, vol.8
, pp. 46
-
-
Makino, Y.1
Itoh, N.2
-
45
-
-
77949462824
-
New statistical potential for quality assessment of protein models and a survey of energy functions
-
10.1186/1471-2105-11-128, 2853469, 20226048
-
Rykunov D, Fiser A. New statistical potential for quality assessment of protein models and a survey of energy functions. BMC Bioinformatics 2010, 11:128. 10.1186/1471-2105-11-128, 2853469, 20226048.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 128
-
-
Rykunov, D.1
Fiser, A.2
-
46
-
-
0025341310
-
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins
-
10.1016/S0022-2836(05)80269-4, 2359125
-
Sippl MJ. Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. J Mol Biol 1990, 213(4):859-883. 10.1016/S0022-2836(05)80269-4, 2359125.
-
(1990)
J Mol Biol
, vol.213
, Issue.4
, pp. 859-883
-
-
Sippl, M.J.1
-
47
-
-
0348129526
-
The ASTRAL Compendium in 2004
-
Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. The ASTRAL Compendium in 2004. Nucleic Acids Res 2004, (32 Database):D189-192.
-
(2004)
Nucleic Acids Res
, Issue.32 DATABASE
-
-
Chandonia, J.M.1
Hon, G.2
Walker, N.S.3
Lo Conte, L.4
Koehl, P.5
Levitt, M.6
Brenner, S.E.7
-
48
-
-
0033853177
-
Decoys 'R' Us: a database of incorrect conformations to improve protein structure prediction
-
10.1110/ps.9.7.1399, 2144680, 10933507
-
Samudrala R, Levitt M. Decoys 'R' Us: a database of incorrect conformations to improve protein structure prediction. Protein Sci 2000, 9(7):1399-1401. 10.1110/ps.9.7.1399, 2144680, 10933507.
-
(2000)
Protein Sci
, vol.9
, Issue.7
, pp. 1399-1401
-
-
Samudrala, R.1
Levitt, M.2
-
49
-
-
0141978673
-
Comparative protein structure modeling by iterative alignment, model building and model assessment
-
10.1093/nar/gkg460, 165975, 12853614
-
John B, Sali A. Comparative protein structure modeling by iterative alignment, model building and model assessment. Nucleic Acids Res 2003, 31(14):3982-3992. 10.1093/nar/gkg460, 165975, 12853614.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.14
, pp. 3982-3992
-
-
John, B.1
Sali, A.2
-
50
-
-
33749578940
-
Statistical potential for assessment and prediction of protein structures
-
10.1110/ps.062416606, 2242414, 17075131
-
Shen MY, Sali A. Statistical potential for assessment and prediction of protein structures. Protein Sci 2006, 15(11):2507-2524. 10.1110/ps.062416606, 2242414, 17075131.
-
(2006)
Protein Sci
, vol.15
, Issue.11
, pp. 2507-2524
-
-
Shen, M.Y.1
Sali, A.2
-
51
-
-
0027650879
-
Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures
-
10.1007/BF02337562, 8229096
-
Sippl MJ. Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures. J Comput Aided Mol Des 1993, 7(4):473-501. 10.1007/BF02337562, 8229096.
-
(1993)
J Comput Aided Mol Des
, vol.7
, Issue.4
, pp. 473-501
-
-
Sippl, M.J.1
-
52
-
-
84888281422
-
Center of Applied Molecular Engineering
-
Sippl MJ. Center of Applied Molecular Engineering.
-
-
-
Sippl, M.J.1
-
53
-
-
0032488962
-
An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction
-
10.1006/jmbi.1997.1479, 9480776
-
Samudrala R, Moult J. An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction. J Mol Biol 1998, 275(5):895-916. 10.1006/jmbi.1997.1479, 9480776.
-
(1998)
J Mol Biol
, vol.275
, Issue.5
, pp. 895-916
-
-
Samudrala, R.1
Moult, J.2
-
54
-
-
46449132707
-
Specific interactions for ab initio folding of protein terminal regions with secondary structures
-
10.1002/prot.21968, 18260109
-
Yang Y, Zhou Y. Specific interactions for ab initio folding of protein terminal regions with secondary structures. Proteins 2008, 72(2):793-803. 10.1002/prot.21968, 18260109.
-
(2008)
Proteins
, vol.72
, Issue.2
, pp. 793-803
-
-
Yang, Y.1
Zhou, Y.2
-
55
-
-
0036838311
-
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
-
2373736, 12381853
-
Zhou H, Zhou Y. Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction. Protein Sci 2002, 11(11):2714-2726. 2373736, 12381853.
-
(2002)
Protein Sci
, vol.11
, Issue.11
, pp. 2714-2726
-
-
Zhou, H.1
Zhou, Y.2
-
56
-
-
77950558372
-
Restricted dead-end elimination: protein redesign with a bounded number of residue mutations
-
Safi M, Lilien RH. Restricted dead-end elimination: protein redesign with a bounded number of residue mutations. J Comput Chem 2010, 31(6):1207-1215.
-
(2010)
J Comput Chem
, vol.31
, Issue.6
, pp. 1207-1215
-
-
Safi, M.1
Lilien, R.H.2
-
57
-
-
34547840252
-
Dead-end elimination with backbone flexibility
-
10.1093/bioinformatics/btm197, 17646295
-
Georgiev I, Donald BR. Dead-end elimination with backbone flexibility. Bioinformatics 2007, 23(13):i185-194. 10.1093/bioinformatics/btm197, 17646295.
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Georgiev, I.1
Donald, B.R.2
-
58
-
-
50649095790
-
Macromolecular modeling with rosetta
-
10.1146/annurev.biochem.77.062906.171838, 18410248
-
Das R, Baker D. Macromolecular modeling with rosetta. Annu Rev Biochem 2008, 77:363-382. 10.1146/annurev.biochem.77.062906.171838, 18410248.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 363-382
-
-
Das, R.1
Baker, D.2
-
59
-
-
64549106038
-
Convergence and combination of methods in protein-protein docking
-
10.1016/j.sbi.2009.02.008, 2763924, 19327983
-
Vajda S, Kozakov D. Convergence and combination of methods in protein-protein docking. Curr Opin Struct Biol 2009, 19(2):164-170. 10.1016/j.sbi.2009.02.008, 2763924, 19327983.
-
(2009)
Curr Opin Struct Biol
, vol.19
, Issue.2
, pp. 164-170
-
-
Vajda, S.1
Kozakov, D.2
|