-
1
-
-
33845407784
-
Reconstitution, activities, and structure of the eukaryotic RNA exosome
-
Liu Q., Greimann J.C., Lima C.D. Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell 2006, 127:1223-1237.
-
(2006)
Cell
, vol.127
, pp. 1223-1237
-
-
Liu, Q.1
Greimann, J.C.2
Lima, C.D.3
-
2
-
-
34247844604
-
RNA channelling by the archaeal exosome
-
Lorentzen E., Dziembowski A., Lindner D., Seraphin B., Conti E. RNA channelling by the archaeal exosome. EMBO Rep. 2007, 8:470-476.
-
(2007)
EMBO Rep.
, vol.8
, pp. 470-476
-
-
Lorentzen, E.1
Dziembowski, A.2
Lindner, D.3
Seraphin, B.4
Conti, E.5
-
3
-
-
0034745504
-
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
-
Koonin E.V., Wolf Y.I., Aravind L. Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res. 2001, 11:240-252.
-
(2001)
Genome Res.
, vol.11
, pp. 240-252
-
-
Koonin, E.V.1
Wolf, Y.I.2
Aravind, L.3
-
4
-
-
0034435974
-
A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation
-
Symmons M.F., Jones G.H., Luisi B.F. A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation. Structure 2000, 8:1215-1226.
-
(2000)
Structure
, vol.8
, pp. 1215-1226
-
-
Symmons, M.F.1
Jones, G.H.2
Luisi, B.F.3
-
5
-
-
33646591595
-
The Pyrococcus exosome complex: structural and functional characterization
-
Ramos C.R., Oliveira C.L., Torriani I.L., Oliveira C.C. The Pyrococcus exosome complex: structural and functional characterization. J. Biol. Chem. 2006, 281:6751-6759.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 6751-6759
-
-
Ramos, C.R.1
Oliveira, C.L.2
Torriani, I.L.3
Oliveira, C.C.4
-
6
-
-
27644496002
-
Structural basis of 3' end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core
-
Lorentzen E., Conti E. Structural basis of 3' end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core. Mol. Cell 2005, 20:473-481.
-
(2005)
Mol. Cell
, vol.20
, pp. 473-481
-
-
Lorentzen, E.1
Conti, E.2
-
7
-
-
27644435644
-
Structural framework for the mechanism of archaeal exosomes in RNA processing
-
Buttner K., Wenig K., Hopfner K.P. Structural framework for the mechanism of archaeal exosomes in RNA processing. Mol. Cell 2005, 20:461-471.
-
(2005)
Mol. Cell
, vol.20
, pp. 461-471
-
-
Buttner, K.1
Wenig, K.2
Hopfner, K.P.3
-
8
-
-
22144493835
-
The archaeal exosome core is a hexameric ring structure with three catalytic subunits
-
Lorentzen E., Walter P., Fribourg S., Evguenieva-Hackenberg E., Klug G., Conti E. The archaeal exosome core is a hexameric ring structure with three catalytic subunits. Nat. Struct. Mol. Biol. 2005, 12:575-581.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 575-581
-
-
Lorentzen, E.1
Walter, P.2
Fribourg, S.3
Evguenieva-Hackenberg, E.4
Klug, G.5
Conti, E.6
-
9
-
-
84861650431
-
Heterogeneous complexes of the RNA exosome in Sulfolobus solfataricus
-
Witharana C., Roppelt V., Lochnit G., Klug G., Evguenieva-Hackenberg E. Heterogeneous complexes of the RNA exosome in Sulfolobus solfataricus. Biochimie 2012, 94:1578-1587.
-
(2012)
Biochimie
, vol.94
, pp. 1578-1587
-
-
Witharana, C.1
Roppelt, V.2
Lochnit, G.3
Klug, G.4
Evguenieva-Hackenberg, E.5
-
10
-
-
77956105539
-
Quantitative analysis of processive RNA degradation by the archaeal RNA exosome
-
Hartung S., Niederberger T., Hartung M., Tresch A., Hopfner K.P. Quantitative analysis of processive RNA degradation by the archaeal RNA exosome. Nucleic Acids Res. 2010, 38:5166-5176.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5166-5176
-
-
Hartung, S.1
Niederberger, T.2
Hartung, M.3
Tresch, A.4
Hopfner, K.P.5
-
11
-
-
0035283033
-
Exoribonuclease superfamilies: structural analysis and phylogenetic distribution
-
Zuo Y., Deutscher M.P. Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res. 2001, 29:1017-1026.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1017-1026
-
-
Zuo, Y.1
Deutscher, M.P.2
-
12
-
-
40849106786
-
Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family
-
Lorentzen E., Basquin J., Tomecki R., Dziembowski A., Conti E. Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family. Mol. Cell 2008, 29:717-728.
-
(2008)
Mol. Cell
, vol.29
, pp. 717-728
-
-
Lorentzen, E.1
Basquin, J.2
Tomecki, R.3
Dziembowski, A.4
Conti, E.5
-
13
-
-
33748414894
-
Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex
-
Frazao C., McVey C.E., Amblar M., Barbas A., Vonrhein C., Arraiano C.M., Carrondo M.A. Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex. Nature 2006, 443:110-114.
-
(2006)
Nature
, vol.443
, pp. 110-114
-
-
Frazao, C.1
McVey, C.E.2
Amblar, M.3
Barbas, A.4
Vonrhein, C.5
Arraiano, C.M.6
Carrondo, M.A.7
-
14
-
-
84867500127
-
The CR3 motif of Rrp44p is important for interaction with the core exosome and exosome function
-
Schaeffer D., Reis F.P., Johnson S.J., Arraiano C.M., van Hoof A. The CR3 motif of Rrp44p is important for interaction with the core exosome and exosome function. Nucleic Acids Res. 2012, 40:9298-9307.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 9298-9307
-
-
Schaeffer, D.1
Reis, F.P.2
Johnson, S.J.3
Arraiano, C.M.4
van Hoof, A.5
-
15
-
-
57749189164
-
Endonucleolytic RNA cleavage by a eukaryotic exosome
-
Lebreton A., Tomecki R., Dziembowski A., Seraphin B. Endonucleolytic RNA cleavage by a eukaryotic exosome. Nature 2008, 456:993-996.
-
(2008)
Nature
, vol.456
, pp. 993-996
-
-
Lebreton, A.1
Tomecki, R.2
Dziembowski, A.3
Seraphin, B.4
-
16
-
-
62049085366
-
The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome
-
Schneider C., Leung E., Brown J., Tollervey D. The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome. Nucleic Acids Res. 2009, 37:1127-1140.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1127-1140
-
-
Schneider, C.1
Leung, E.2
Brown, J.3
Tollervey, D.4
-
17
-
-
58149236691
-
The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities
-
Schaeffer D., Tsanova B., Barbas A., Reis F.P., Dastidar E.G., Sanchez-Rotunno M., Arraiano C.M., van Hoof A. The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities. Nat. Struct. Mol. Biol. 2009, 16:56-62.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 56-62
-
-
Schaeffer, D.1
Tsanova, B.2
Barbas, A.3
Reis, F.P.4
Dastidar, E.G.5
Sanchez-Rotunno, M.6
Arraiano, C.M.7
van Hoof, A.8
-
18
-
-
1942533451
-
Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease
-
Arcus V.L., Backbro K., Roos A., Daniel E.L., Baker E.N. Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease. J. Biol. Chem. 2004, 279:16471-16478.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 16471-16478
-
-
Arcus, V.L.1
Backbro, K.2
Roos, A.3
Daniel, E.L.4
Baker, E.N.5
-
19
-
-
0034649546
-
PIN domains in nonsense-mediated mRNA decay and RNAi
-
Clissold P.M., Ponting C.P. PIN domains in nonsense-mediated mRNA decay and RNAi. Curr. Biol. 2000, 10:R888-R890.
-
(2000)
Curr. Biol.
, vol.10
-
-
Clissold, P.M.1
Ponting, C.P.2
-
20
-
-
70350336247
-
The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation
-
Bonneau F., Basquin J., Ebert J., Lorentzen E., Conti E. The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation. Cell 2009, 139:547-559.
-
(2009)
Cell
, vol.139
, pp. 547-559
-
-
Bonneau, F.1
Basquin, J.2
Ebert, J.3
Lorentzen, E.4
Conti, E.5
-
21
-
-
79952304472
-
Different nuclease requirements for exosome-mediated degradation of normal and nonstop mRNAs
-
Schaeffer D., van Hoof A. Different nuclease requirements for exosome-mediated degradation of normal and nonstop mRNAs. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:2366-2371.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 2366-2371
-
-
Schaeffer, D.1
van Hoof, A.2
-
22
-
-
84867500127
-
The CR3 motif of Rrp44p is important for interaction with the core exosome and exosome function
-
Schaeffer D., Reis F.P., Johnson S.J., Arraiano C.M., van Hoof A. The CR3 motif of Rrp44p is important for interaction with the core exosome and exosome function. Nucleic Acids Res. 2012, 40:9298-9307.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 9298-9307
-
-
Schaeffer, D.1
Reis, F.P.2
Johnson, S.J.3
Arraiano, C.M.4
van Hoof, A.5
-
23
-
-
79960473450
-
Activities of human RRP6 and structure of the human RRP6 catalytic domain
-
Januszyk K., Liu Q., Lima C.D. Activities of human RRP6 and structure of the human RRP6 catalytic domain. RNA (New York, N.Y.) 2011, 17:1566-1577.
-
(2011)
RNA (New York, N.Y.)
, vol.17
, pp. 1566-1577
-
-
Januszyk, K.1
Liu, Q.2
Lima, C.D.3
-
24
-
-
33747041640
-
Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain
-
Midtgaard S.F., Assenholt J., Jonstrup A.T., Van L.B., Jensen T.H., Brodersen D.E. Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:11898-11903.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 11898-11903
-
-
Midtgaard, S.F.1
Assenholt, J.2
Jonstrup, A.T.3
Van, L.B.4
Jensen, T.H.5
Brodersen, D.E.6
-
25
-
-
79953017227
-
The C-terminal region of the exosome-associated protein Rrp47 is specifically required for box C/D small nucleolar RNA 3'-maturation
-
Costello J.L., Stead J.A., Feigenbutz M., Jones R.M., Mitchell P. The C-terminal region of the exosome-associated protein Rrp47 is specifically required for box C/D small nucleolar RNA 3'-maturation. J. Biol. Chem. 2011, 286:4535-4543.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 4535-4543
-
-
Costello, J.L.1
Stead, J.A.2
Feigenbutz, M.3
Jones, R.M.4
Mitchell, P.5
-
26
-
-
34548712987
-
The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein
-
Stead J.A., Costello J.L., Livingstone M.J., Mitchell P. The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein. Nucleic Acids Res. 2007, 35:5556-5567.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 5556-5567
-
-
Stead, J.A.1
Costello, J.L.2
Livingstone, M.J.3
Mitchell, P.4
-
27
-
-
33846068920
-
A single subunit, Dis3, is essentially responsible for yeast exosome core activity
-
Dziembowski A., Lorentzen E., Conti E., Seraphin B. A single subunit, Dis3, is essentially responsible for yeast exosome core activity. Nat. Struct. Mol. Biol. 2007, 14:15-22.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 15-22
-
-
Dziembowski, A.1
Lorentzen, E.2
Conti, E.3
Seraphin, B.4
-
28
-
-
80051730960
-
Interaction profiling identifies the human nuclear exosome targeting complex
-
Lubas M., Christensen M.S., Kristiansen M.S., Domanski M., Falkenby L.G., Lykke-Andersen S., Andersen J.S., Dziembowski A., Jensen T.H. Interaction profiling identifies the human nuclear exosome targeting complex. Mol. Cell 2011, 43:624-637.
-
(2011)
Mol. Cell
, vol.43
, pp. 624-637
-
-
Lubas, M.1
Christensen, M.S.2
Kristiansen, M.S.3
Domanski, M.4
Falkenby, L.G.5
Lykke-Andersen, S.6
Andersen, J.S.7
Dziembowski, A.8
Jensen, T.H.9
-
29
-
-
41549133010
-
The Leishmania tarentolae exosome: purification and structural analysis by electron microscopy
-
Cristodero M., Bottcher B., Diepholz M., Scheffzek K., Clayton C. The Leishmania tarentolae exosome: purification and structural analysis by electron microscopy. Mol. Biochem. Parasitol. 2008, 159:24-29.
-
(2008)
Mol. Biochem. Parasitol.
, vol.159
, pp. 24-29
-
-
Cristodero, M.1
Bottcher, B.2
Diepholz, M.3
Scheffzek, K.4
Clayton, C.5
-
30
-
-
34250777933
-
A core subunit of the RNA-processing/degrading exosome specifically influences cuticular wax biosynthesis in Arabidopsis
-
Hooker T.S., Lam P., Zheng H., Kunst L. A core subunit of the RNA-processing/degrading exosome specifically influences cuticular wax biosynthesis in Arabidopsis. Plant Cell 2007, 19:904-913.
-
(2007)
Plant Cell
, vol.19
, pp. 904-913
-
-
Hooker, T.S.1
Lam, P.2
Zheng, H.3
Kunst, L.4
-
31
-
-
0033567131
-
The yeast exosome and human PM-Scl are related complexes of 3' -> 5' exonucleases
-
Allmang C., Petfalski E., Podtelejnikov A., Mann M., Tollervey D., Mitchell P. The yeast exosome and human PM-Scl are related complexes of 3' -> 5' exonucleases. Genes Dev. 1999, 13:2148-2158.
-
(1999)
Genes Dev.
, vol.13
, pp. 2148-2158
-
-
Allmang, C.1
Petfalski, E.2
Podtelejnikov, A.3
Mann, M.4
Tollervey, D.5
Mitchell, P.6
-
32
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh W.K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., Weissman J.S., O'Shea E.K. Global analysis of protein localization in budding yeast. Nature 2003, 425:686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
33
-
-
34250339672
-
C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing
-
Schilders G., van Dijk E., Pruijn G.J. C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing. Nucleic Acids Res. 2007, 35:2564-2572.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2564-2572
-
-
Schilders, G.1
van Dijk, E.2
Pruijn, G.J.3
-
34
-
-
77954877566
-
The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L
-
Tomecki R., Kristiansen M.S., Lykke-Andersen S., Chlebowski A., Larsen K.M., Szczesny R.J., Drazkowska K., Pastula A., Andersen J.S., Stepien P.P., Dziembowski A., Jensen T.H. The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L. EMBO J. 2010, 29:2342-2357.
-
(2010)
EMBO J.
, vol.29
, pp. 2342-2357
-
-
Tomecki, R.1
Kristiansen, M.S.2
Lykke-Andersen, S.3
Chlebowski, A.4
Larsen, K.M.5
Szczesny, R.J.6
Drazkowska, K.7
Pastula, A.8
Andersen, J.S.9
Stepien, P.P.10
Dziembowski, A.11
Jensen, T.H.12
-
35
-
-
77954867631
-
Dis3-like 1: a novel exoribonuclease associated with the human exosome
-
Staals R.H., Bronkhorst A.W., Schilders G., Slomovic S., Schuster G., Heck A.J., Raijmakers R., Pruijn G.J. Dis3-like 1: a novel exoribonuclease associated with the human exosome. EMBO J. 2010, 29:2358-2367.
-
(2010)
EMBO J.
, vol.29
, pp. 2358-2367
-
-
Staals, R.H.1
Bronkhorst, A.W.2
Schilders, G.3
Slomovic, S.4
Schuster, G.5
Heck, A.J.6
Raijmakers, R.7
Pruijn, G.J.8
-
36
-
-
33744816815
-
Subunit architecture of multimeric complexes isolated directly from cells
-
Hernandez H., Dziembowski A., Taverner T., Seraphin B., Robinson C.V. Subunit architecture of multimeric complexes isolated directly from cells. EMBO Rep. 2006, 7:605-610.
-
(2006)
EMBO Rep.
, vol.7
, pp. 605-610
-
-
Hernandez, H.1
Dziembowski, A.2
Taverner, T.3
Seraphin, B.4
Robinson, C.V.5
-
37
-
-
37349038984
-
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome
-
Chekanova J.A., Gregory B.D., Reverdatto S.V., Chen H., Kumar R., Hooker T., Yazaki J., Li P., Skiba N., Peng Q., Alonso J., Brukhin V., Grossniklaus U., Ecker J.R., Belostotsky D.A. Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell 2007, 131:1340-1353.
-
(2007)
Cell
, vol.131
, pp. 1340-1353
-
-
Chekanova, J.A.1
Gregory, B.D.2
Reverdatto, S.V.3
Chen, H.4
Kumar, R.5
Hooker, T.6
Yazaki, J.7
Li, P.8
Skiba, N.9
Peng, Q.10
Alonso, J.11
Brukhin, V.12
Grossniklaus, U.13
Ecker, J.R.14
Belostotsky, D.A.15
-
38
-
-
0032557455
-
Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation
-
Briggs M.W., Burkard K.T., Butler J.S. Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation. J. Biol. Chem. 1998, 273:13255-13263.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 13255-13263
-
-
Briggs, M.W.1
Burkard, K.T.2
Butler, J.S.3
-
39
-
-
64849104681
-
Interdependent nucleocytoplasmic trafficking and interactions of Dis3 with Rrp6, the core exosome and importin-alpha3
-
Graham A.C., Davis S.M., Andrulis E.D. Interdependent nucleocytoplasmic trafficking and interactions of Dis3 with Rrp6, the core exosome and importin-alpha3. Traffic 2009, 10:499-513.
-
(2009)
Traffic
, vol.10
, pp. 499-513
-
-
Graham, A.C.1
Davis, S.M.2
Andrulis, E.D.3
-
40
-
-
33845342890
-
The subcellular localisation of trypanosome RRP6 and its association with the exosome
-
Haile S., Cristodero M., Clayton C., Estevez A.M. The subcellular localisation of trypanosome RRP6 and its association with the exosome. Mol. Biochem. Parasitol. 2007, 151:52-58.
-
(2007)
Mol. Biochem. Parasitol.
, vol.151
, pp. 52-58
-
-
Haile, S.1
Cristodero, M.2
Clayton, C.3
Estevez, A.M.4
-
41
-
-
42349090712
-
Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana
-
Lange H., Holec S., Cognat V., Pieuchot L., Le Ret M., Canaday J., Gagliardi D. Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana. Mol. Cell. Biol. 2008, 28:3038-3044.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 3038-3044
-
-
Lange, H.1
Holec, S.2
Cognat, V.3
Pieuchot, L.4
Le Ret, M.5
Canaday, J.6
Gagliardi, D.7
-
42
-
-
33750440205
-
Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricus
-
Walter P., Klein F., Lorentzen E., Ilchmann A., Klug G., Evguenieva-Hackenberg E. Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Microbiol. 2006, 62:1076-1089.
-
(2006)
Mol. Microbiol.
, vol.62
, pp. 1076-1089
-
-
Walter, P.1
Klein, F.2
Lorentzen, E.3
Ilchmann, A.4
Klug, G.5
Evguenieva-Hackenberg, E.6
-
43
-
-
0342276245
-
Reversible synthesis of polyribonucleotides with an enzyme from Escherichia coli
-
Littauer U.Z., Kornberg A. Reversible synthesis of polyribonucleotides with an enzyme from Escherichia coli. J. Biol. Chem. 1957, 226:1077-1092.
-
(1957)
J. Biol. Chem.
, vol.226
, pp. 1077-1092
-
-
Littauer, U.Z.1
Kornberg, A.2
-
44
-
-
0034693061
-
Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells
-
Chekanova J.A., Shaw R.J., Wills M.A., Belostotsky D.A. Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells. J. Biol. Chem. 2000, 275:33158-33166.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 33158-33166
-
-
Chekanova, J.A.1
Shaw, R.J.2
Wills, M.A.3
Belostotsky, D.A.4
-
45
-
-
0037077311
-
Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II
-
Cheng Z.F., Deutscher M.P. Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II. J. Biol. Chem. 2002, 277:21624-21629.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 21624-21629
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
46
-
-
62049085767
-
Insights into how RNase R degrades structured RNA: analysis of the nuclease domain
-
Vincent H.A., Deutscher M.P. Insights into how RNase R degrades structured RNA: analysis of the nuclease domain. J. Mol. Biol. 2009, 387:570-583.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 570-583
-
-
Vincent, H.A.1
Deutscher, M.P.2
-
47
-
-
84862991581
-
Elastic coupling between RNA degradation and unwinding by an exoribonuclease
-
Lee G., Bratkowski M.A., Ding F., Ke A., Ha T. Elastic coupling between RNA degradation and unwinding by an exoribonuclease. Science (New York, N.Y.) 2012, 336:1726-1729.
-
(2012)
Science (New York, N.Y.)
, vol.336
, pp. 1726-1729
-
-
Lee, G.1
Bratkowski, M.A.2
Ding, F.3
Ke, A.4
Ha, T.5
-
48
-
-
0030702085
-
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'->5' exoribonucleases
-
Mitchell P., Petfalski E., Shevchenko A., Mann M., Tollervey D. The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'->5' exoribonucleases. Cell 1997, 91:457-466.
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
49
-
-
84867395423
-
Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel
-
Wasmuth E.V., Lima C.D. Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel. Mol. Cell 2012, 48:133-144.
-
(2012)
Mol. Cell
, vol.48
, pp. 133-144
-
-
Wasmuth, E.V.1
Lima, C.D.2
-
50
-
-
78649469070
-
RNA channelling by the eukaryotic exosome
-
Malet H., Topf M., Clare D.K., Ebert J., Bonneau F., Basquin J., Drazkowska K., Tomecki R., Dziembowski A., Conti E., Saibil H.R., Lorentzen E. RNA channelling by the eukaryotic exosome. EMBO Rep. 2010, 11:936-942.
-
(2010)
EMBO Rep.
, vol.11
, pp. 936-942
-
-
Malet, H.1
Topf, M.2
Clare, D.K.3
Ebert, J.4
Bonneau, F.5
Basquin, J.6
Drazkowska, K.7
Tomecki, R.8
Dziembowski, A.9
Conti, E.10
Saibil, H.R.11
Lorentzen, E.12
-
51
-
-
0034653440
-
Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast
-
van Hoof A., Lennertz P., Parker R. Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast. EMBO J. 2000, 19:1357-1365.
-
(2000)
EMBO J.
, vol.19
, pp. 1357-1365
-
-
van Hoof, A.1
Lennertz, P.2
Parker, R.3
-
52
-
-
84869082850
-
Transcriptome-wide analysis of exosome targets
-
Schneider C., Kudla G., Wlotzka W., Tuck A., Tollervey D. Transcriptome-wide analysis of exosome targets. Mol. Cell 2012, 48:422-433.
-
(2012)
Mol. Cell
, vol.48
, pp. 422-433
-
-
Schneider, C.1
Kudla, G.2
Wlotzka, W.3
Tuck, A.4
Tollervey, D.5
-
53
-
-
41549107524
-
RNA recognition by 3'-to-5' exonucleases: the substrate perspective
-
Ibrahim H., Wilusz J., Wilusz C.J. RNA recognition by 3'-to-5' exonucleases: the substrate perspective. Biochim. Biophys. Acta 2008, 1779:256-265.
-
(2008)
Biochim. Biophys. Acta
, vol.1779
, pp. 256-265
-
-
Ibrahim, H.1
Wilusz, J.2
Wilusz, C.J.3
-
54
-
-
34447300418
-
The exosome subunit Rrp44 plays a direct role in RNA substrate recognition
-
Schneider C., Anderson J.T., Tollervey D. The exosome subunit Rrp44 plays a direct role in RNA substrate recognition. Mol. Cell 2007, 27:324-331.
-
(2007)
Mol. Cell
, vol.27
, pp. 324-331
-
-
Schneider, C.1
Anderson, J.T.2
Tollervey, D.3
-
55
-
-
77956034926
-
Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism
-
Tomecki R., Dziembowski A. Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism. RNA (New York, N.Y.) 2010, 16:1692-1724.
-
(2010)
RNA (New York, N.Y.)
, vol.16
, pp. 1692-1724
-
-
Tomecki, R.1
Dziembowski, A.2
-
56
-
-
0032481316
-
Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae
-
de la Cruz J., Kressler D., Tollervey D., Linder P. Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae. EMBO J. 1998, 17:1128-1140.
-
(1998)
EMBO J.
, vol.17
, pp. 1128-1140
-
-
de la Cruz, J.1
Kressler, D.2
Tollervey, D.3
Linder, P.4
-
57
-
-
0037708880
-
A panoramic view of yeast noncoding RNA processing
-
Peng W.T., Robinson M.D., Mnaimneh S., Krogan N.J., Cagney G., Morris Q., Davierwala A.P., Grigull J., Yang X., Zhang W., Mitsakakis N., Ryan O.W., Datta N., Jojic V., Pal C., Canadien V., Richards D., Beattie B., Wu L.F., Altschuler S.J., Roweis S., Frey B.J., Emili A., Greenblatt J.F., Hughes T.R. A panoramic view of yeast noncoding RNA processing. Cell 2003, 113:919-933.
-
(2003)
Cell
, vol.113
, pp. 919-933
-
-
Peng, W.T.1
Robinson, M.D.2
Mnaimneh, S.3
Krogan, N.J.4
Cagney, G.5
Morris, Q.6
Davierwala, A.P.7
Grigull, J.8
Yang, X.9
Zhang, W.10
Mitsakakis, N.11
Ryan, O.W.12
Datta, N.13
Jojic, V.14
Pal, C.15
Canadien, V.16
Richards, D.17
Beattie, B.18
Wu, L.F.19
Altschuler, S.J.20
Roweis, S.21
Frey, B.J.22
Emili, A.23
Greenblatt, J.F.24
Hughes, T.R.25
more..
-
58
-
-
20444368036
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
Wyers F., Rougemaille M., Badis G., Rousselle J.C., Dufour M.E., Boulay J., Regnault B., Devaux F., Namane A., Seraphin B., Libri D., Jacquier A. Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 2005, 121:725-737.
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
Rousselle, J.C.4
Dufour, M.E.5
Boulay, J.6
Regnault, B.7
Devaux, F.8
Namane, A.9
Seraphin, B.10
Libri, D.11
Jacquier, A.12
-
59
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
LaCava J., Houseley J., Saveanu C., Petfalski E., Thompson E., Jacquier A., Tollervey D. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 2005, 121:713-724.
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
LaCava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
Tollervey, D.7
-
60
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
Vanacova S., Wolf J., Martin G., Blank D., Dettwiler S., Friedlein A., Langen H., Keith G., Keller W. A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol. 2005, 3:e189.
-
(2005)
PLoS Biol.
, vol.3
-
-
Vanacova, S.1
Wolf, J.2
Martin, G.3
Blank, D.4
Dettwiler, S.5
Friedlein, A.6
Langen, H.7
Keith, G.8
Keller, W.9
-
61
-
-
79958267118
-
The RNA helicase Mtr4p modulates polyadenylation in the TRAMP complex
-
Jia H., Wang X., Liu F., Guenther U.P., Srinivasan S., Anderson J.T., Jankowsky E. The RNA helicase Mtr4p modulates polyadenylation in the TRAMP complex. Cell 2011, 145:890-901.
-
(2011)
Cell
, vol.145
, pp. 890-901
-
-
Jia, H.1
Wang, X.2
Liu, F.3
Guenther, U.P.4
Srinivasan, S.5
Anderson, J.T.6
Jankowsky, E.7
-
62
-
-
84860806396
-
RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex
-
Jia H., Wang X., Anderson J.T., Jankowsky E. RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:7292-7297.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 7292-7297
-
-
Jia, H.1
Wang, X.2
Anderson, J.T.3
Jankowsky, E.4
-
63
-
-
84864322244
-
Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins
-
Schmid M., Poulsen M.B., Olszewski P., Pelechano V., Saguez C., Gupta I., Steinmetz L.M., Moore C., Jensen T.H. Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Mol. Cell 2012, 47:267-280.
-
(2012)
Mol. Cell
, vol.47
, pp. 267-280
-
-
Schmid, M.1
Poulsen, M.B.2
Olszewski, P.3
Pelechano, V.4
Saguez, C.5
Gupta, I.6
Steinmetz, L.M.7
Moore, C.8
Jensen, T.H.9
-
64
-
-
34247628538
-
Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants
-
Rougemaille M., Gudipati R.K., Olesen J.R., Thomsen R., Seraphin B., Libri D., Jensen T.H. Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants. EMBO J. 2007, 26:2317-2326.
-
(2007)
EMBO J.
, vol.26
, pp. 2317-2326
-
-
Rougemaille, M.1
Gudipati, R.K.2
Olesen, J.R.3
Thomsen, R.4
Seraphin, B.5
Libri, D.6
Jensen, T.H.7
-
65
-
-
68249083958
-
Distinct roles of non-canonical poly(A) polymerases in RNA metabolism
-
San Paolo S., Vanacova S., Schenk L., Scherrer T., Blank D., Keller W., Gerber A.P. Distinct roles of non-canonical poly(A) polymerases in RNA metabolism. PLoS Genet. 2009, 5:e1000555.
-
(2009)
PLoS Genet.
, vol.5
-
-
San Paolo, S.1
Vanacova, S.2
Schenk, L.3
Scherrer, T.4
Blank, D.5
Keller, W.6
Gerber, A.P.7
-
66
-
-
80053569699
-
Pervasive transcription - lessons from yeast
-
Tisseur M., Kwapisz M., Morillon A. Pervasive transcription - lessons from yeast. Biochimie 2011, 93:1889-1896.
-
(2011)
Biochimie
, vol.93
, pp. 1889-1896
-
-
Tisseur, M.1
Kwapisz, M.2
Morillon, A.3
-
67
-
-
79960065233
-
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast
-
van Dijk E.L., Chen C.L., d'Aubenton-Carafa Y., Gourvennec S., Kwapisz M., Roche V., Bertrand C., Silvain M., Legoix-Ne P., Loeillet S., Nicolas A., Thermes C., Morillon A. XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast. Nature 2011, 475:114-117.
-
(2011)
Nature
, vol.475
, pp. 114-117
-
-
van Dijk, E.L.1
Chen, C.L.2
d'Aubenton-Carafa, Y.3
Gourvennec, S.4
Kwapisz, M.5
Roche, V.6
Bertrand, C.7
Silvain, M.8
Legoix-Ne, P.9
Loeillet, S.10
Nicolas, A.11
Thermes, C.12
Morillon, A.13
-
68
-
-
0035921929
-
RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts
-
Steinmetz E.J., Conrad N.K., Brow D.A., Corden J.L. RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts. Nature 2001, 413:327-331.
-
(2001)
Nature
, vol.413
, pp. 327-331
-
-
Steinmetz, E.J.1
Conrad, N.K.2
Brow, D.A.3
Corden, J.L.4
-
69
-
-
53949109201
-
Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast
-
Grzechnik P., Kufel J. Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast. Mol. Cell 2008, 32:247-258.
-
(2008)
Mol. Cell
, vol.32
, pp. 247-258
-
-
Grzechnik, P.1
Kufel, J.2
-
70
-
-
33748424364
-
Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3
-
Arigo J.T., Eyler D.E., Carroll K.L., Corden J.L. Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol. Cell 2006, 23:841-851.
-
(2006)
Mol. Cell
, vol.23
, pp. 841-851
-
-
Arigo, J.T.1
Eyler, D.E.2
Carroll, K.L.3
Corden, J.L.4
-
71
-
-
79955587252
-
The nuclear RNA polymerase II surveillance system targets polymerase III transcripts
-
Wlotzka W., Kudla G., Granneman S., Tollervey D. The nuclear RNA polymerase II surveillance system targets polymerase III transcripts. EMBO J. 2011, 30:1790-1803.
-
(2011)
EMBO J.
, vol.30
, pp. 1790-1803
-
-
Wlotzka, W.1
Kudla, G.2
Granneman, S.3
Tollervey, D.4
-
72
-
-
33748435751
-
Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance
-
Thiebaut M., Kisseleva-Romanova E., Rougemaille M., Boulay J., Libri D. Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance. Mol. Cell 2006, 23:853-864.
-
(2006)
Mol. Cell
, vol.23
, pp. 853-864
-
-
Thiebaut, M.1
Kisseleva-Romanova, E.2
Rougemaille, M.3
Boulay, J.4
Libri, D.5
-
73
-
-
84869093362
-
Extensive degradation of RNA precursors by the exosome in wild-type cells
-
Gudipati R.K., Xu Z., Lebreton A., Seraphin B., Steinmetz L.M., Jacquier A., Libri D. Extensive degradation of RNA precursors by the exosome in wild-type cells. Mol. Cell 2012, 48:409-421.
-
(2012)
Mol. Cell
, vol.48
, pp. 409-421
-
-
Gudipati, R.K.1
Xu, Z.2
Lebreton, A.3
Seraphin, B.4
Steinmetz, L.M.5
Jacquier, A.6
Libri, D.7
-
74
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker P., Nielsen J., Kammler S., Lykke-Andersen S., Christensen M.S., Mapendano C.K., Schierup M.H., Jensen T.H. RNA exosome depletion reveals transcription upstream of active human promoters. Science (New York, N.Y.) 2008, 322:1851-1854.
-
(2008)
Science (New York, N.Y.)
, vol.322
, pp. 1851-1854
-
-
Preker, P.1
Nielsen, J.2
Kammler, S.3
Lykke-Andersen, S.4
Christensen, M.S.5
Mapendano, C.K.6
Schierup, M.H.7
Jensen, T.H.8
-
75
-
-
79960681216
-
Rrp6, Rrp47 and cofactors of the nuclear exosome
-
Butler J.S., Mitchell P. Rrp6, Rrp47 and cofactors of the nuclear exosome. Adv. Exp. Med. Biol. 2010, 702:91-104.
-
(2010)
Adv. Exp. Med. Biol.
, vol.702
, pp. 91-104
-
-
Butler, J.S.1
Mitchell, P.2
-
76
-
-
29244475356
-
MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation
-
Schilders G., Raijmakers R., Raats J.M., Pruijn G.J. MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation. Nucleic Acids Res. 2005, 33:6795-6804.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6795-6804
-
-
Schilders, G.1
Raijmakers, R.2
Raats, J.M.3
Pruijn, G.J.4
-
77
-
-
79960681216
-
Rrp6, rrp47 and cofactors of the nuclear exosome
-
Butler J.S., Mitchell P. Rrp6, rrp47 and cofactors of the nuclear exosome. Adv. Exp. Med. Biol. 2011, 702:91-104.
-
(2011)
Adv. Exp. Med. Biol.
, vol.702
, pp. 91-104
-
-
Butler, J.S.1
Mitchell, P.2
-
78
-
-
0141669145
-
Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs
-
Mitchell P., Petfalski E., Houalla R., Podtelejnikov A., Mann M., Tollervey D. Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs. Mol. Cell. Biol. 2003, 23:6982-6992.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 6982-6992
-
-
Mitchell, P.1
Petfalski, E.2
Houalla, R.3
Podtelejnikov, A.4
Mann, M.5
Tollervey, D.6
-
79
-
-
50249112157
-
A yeast exosome cofactor, Mpp 6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts
-
Milligan L., Decourty L., Saveanu C., Rappsilber J., Ceulemans H., Jacquier A., Tollervey D. A yeast exosome cofactor, Mpp 6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts. Mol. Cell. Biol. 2008, 28:5446-5457.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 5446-5457
-
-
Milligan, L.1
Decourty, L.2
Saveanu, C.3
Rappsilber, J.4
Ceulemans, H.5
Jacquier, A.6
Tollervey, D.7
-
80
-
-
84864072645
-
Rrp6 is recruited to transcribed genes and accompanies the spliced mRNA to the nuclear pore
-
Hessle V., von Euler A., Gonzalez de Valdivia E., Visa N. Rrp6 is recruited to transcribed genes and accompanies the spliced mRNA to the nuclear pore. RNA (New York, N.Y.) 2012, 18:1466-1474.
-
(2012)
RNA (New York, N.Y.)
, vol.18
, pp. 1466-1474
-
-
Hessle, V.1
von Euler, A.2
Gonzalez de Valdivia, E.3
Visa, N.4
-
81
-
-
7544236961
-
Genome-wide mRNA surveillance is coupled to mRNA export
-
Hieronymus H., Yu M.C., Silver P.A. Genome-wide mRNA surveillance is coupled to mRNA export. Genes Dev. 2004, 18:2652-2662.
-
(2004)
Genes Dev.
, vol.18
, pp. 2652-2662
-
-
Hieronymus, H.1
Yu, M.C.2
Silver, P.A.3
-
82
-
-
0041832131
-
Localization of nuclear retained mRNAs in Saccharomyces cerevisiae
-
Thomsen R., Libri D., Boulay J., Rosbash M., Jensen T.H. Localization of nuclear retained mRNAs in Saccharomyces cerevisiae. RNA (New York, N.Y.) 2003, 9:1049-1057.
-
(2003)
RNA (New York, N.Y.)
, vol.9
, pp. 1049-1057
-
-
Thomsen, R.1
Libri, D.2
Boulay, J.3
Rosbash, M.4
Jensen, T.H.5
-
83
-
-
84867400842
-
Nuclear retention prevents premature cytoplasmic appearance of mRNA
-
Kallehauge T.B., Robert M.C., Bertrand E., Jensen T.H. Nuclear retention prevents premature cytoplasmic appearance of mRNA. Mol. Cell 2012, 48:145-152.
-
(2012)
Mol. Cell
, vol.48
, pp. 145-152
-
-
Kallehauge, T.B.1
Robert, M.C.2
Bertrand, E.3
Jensen, T.H.4
-
84
-
-
0000577868
-
The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex
-
Anderson J.S., Parker R.P. The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex. EMBO J. 1998, 17:1497-1506.
-
(1998)
EMBO J.
, vol.17
, pp. 1497-1506
-
-
Anderson, J.S.1
Parker, R.P.2
-
85
-
-
37549048557
-
The yeast Ski complex is a hetero-tetramer
-
Synowsky S.A., Heck A.J. The yeast Ski complex is a hetero-tetramer. Protein Sci. 2008, 17:119-125.
-
(2008)
Protein Sci.
, vol.17
, pp. 119-125
-
-
Synowsky, S.A.1
Heck, A.J.2
-
86
-
-
23644443992
-
Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p
-
Wang L., Lewis M.S., Johnson A.W. Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p. RNA (New York, N.Y.) 2005, 11:1291-1302.
-
(2005)
RNA (New York, N.Y.)
, vol.11
, pp. 1291-1302
-
-
Wang, L.1
Lewis, M.S.2
Johnson, A.W.3
-
87
-
-
0033777266
-
Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA
-
van Hoof A., Staples R.R., Baker R.E., Parker R. Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA. Mol. Cell. Biol. 2000, 20:8230-8243.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 8230-8243
-
-
van Hoof, A.1
Staples, R.R.2
Baker, R.E.3
Parker, R.4
-
88
-
-
15444368560
-
Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome
-
Orban T.I., Izaurralde E. Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome. RNA (New York, N.Y.) 2005, 11:459-469.
-
(2005)
RNA (New York, N.Y.)
, vol.11
, pp. 459-469
-
-
Orban, T.I.1
Izaurralde, E.2
-
89
-
-
0035801392
-
Ski7p G protein interacts with the exosome and the Ski complex for 3'-to-5' mRNA decay in yeast
-
Araki Y., Takahashi S., Kobayashi T., Kajiho H., Hoshino S., Katada T. Ski7p G protein interacts with the exosome and the Ski complex for 3'-to-5' mRNA decay in yeast. EMBO J. 2001, 20:4684-4693.
-
(2001)
EMBO J.
, vol.20
, pp. 4684-4693
-
-
Araki, Y.1
Takahashi, S.2
Kobayashi, T.3
Kajiho, H.4
Hoshino, S.5
Katada, T.6
-
90
-
-
33645124787
-
Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication
-
van Hoof A. Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication. Genetics 2005, 171:1455-1461.
-
(2005)
Genetics
, vol.171
, pp. 1455-1461
-
-
van Hoof, A.1
-
92
-
-
78649720695
-
Cutting the nonsense: the degradation of PTC-containing mRNAs
-
Nicholson P., Muhlemann O. Cutting the nonsense: the degradation of PTC-containing mRNAs. Biochem. Soc. Trans. 2010, 38:1615-1620.
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 1615-1620
-
-
Nicholson, P.1
Muhlemann, O.2
-
93
-
-
0036715205
-
Non-stop decay-a new mRNA surveillance pathway
-
Vasudevan S., Peltz S.W., Wilusz C.J. Non-stop decay-a new mRNA surveillance pathway. Bioessays 2002, 24:785-788.
-
(2002)
Bioessays
, vol.24
, pp. 785-788
-
-
Vasudevan, S.1
Peltz, S.W.2
Wilusz, C.J.3
-
94
-
-
84861456756
-
Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3' end of aberrant mRNA
-
Tsuboi T., Kuroha K., Kudo K., Makino S., Inoue E., Kashima I., Inada T. Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3' end of aberrant mRNA. Mol. Cell 2012, 46:518-529.
-
(2012)
Mol. Cell
, vol.46
, pp. 518-529
-
-
Tsuboi, T.1
Kuroha, K.2
Kudo, K.3
Makino, S.4
Inoue, E.5
Kashima, I.6
Inada, T.7
-
95
-
-
33645277360
-
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
-
Doma M.K., Parker R. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 2006, 440:561-564.
-
(2006)
Nature
, vol.440
, pp. 561-564
-
-
Doma, M.K.1
Parker, R.2
-
96
-
-
84863869059
-
RNA degradation in Saccharomyces cerevisae
-
Parker R. RNA degradation in Saccharomyces cerevisae. Genetics 2012, 191:671-702.
-
(2012)
Genetics
, vol.191
, pp. 671-702
-
-
Parker, R.1
-
97
-
-
33646200678
-
ARE-mRNA degradation requires the 5'-3' decay pathway
-
Stoecklin G., Mayo T., Anderson P. ARE-mRNA degradation requires the 5'-3' decay pathway. EMBO Rep. 2006, 7:72-77.
-
(2006)
EMBO Rep.
, vol.7
, pp. 72-77
-
-
Stoecklin, G.1
Mayo, T.2
Anderson, P.3
-
98
-
-
34147223557
-
A+U-rich instability elements differentially activate 5'-3' and 3'-5' mRNA decay
-
Murray E.L., Schoenberg D.R. A+U-rich instability elements differentially activate 5'-3' and 3'-5' mRNA decay. Mol. Cell. Biol. 2007, 27:2791-2799.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 2791-2799
-
-
Murray, E.L.1
Schoenberg, D.R.2
-
99
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
Chen C.Y., Gherzi R., Ong S.E., Chan E.L., Raijmakers R., Pruijn G.J., Stoecklin G., Moroni C., Mann M., Karin M. AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 2001, 107:451-464.
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.Y.1
Gherzi, R.2
Ong, S.E.3
Chan, E.L.4
Raijmakers, R.5
Pruijn, G.J.6
Stoecklin, G.7
Moroni, C.8
Mann, M.9
Karin, M.10
-
100
-
-
0037080834
-
The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements
-
Mukherjee D., Gao M., O'Connor J.P., Raijmakers R., Pruijn G., Lutz C.S., Wilusz J. The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements. EMBO J. 2002, 21:165-174.
-
(2002)
EMBO J.
, vol.21
, pp. 165-174
-
-
Mukherjee, D.1
Gao, M.2
O'Connor, J.P.3
Raijmakers, R.4
Pruijn, G.5
Lutz, C.S.6
Wilusz, J.7
-
101
-
-
1642523679
-
Facilitation of mRNA deadenylation and decay by the exosome-bound, DExH protein RHAU
-
Tran H., Schilling M., Wirbelauer C., Hess D., Nagamine Y. Facilitation of mRNA deadenylation and decay by the exosome-bound, DExH protein RHAU. Mol. Cell 2004, 13:101-111.
-
(2004)
Mol. Cell
, vol.13
, pp. 101-111
-
-
Tran, H.1
Schilling, M.2
Wirbelauer, C.3
Hess, D.4
Nagamine, Y.5
-
102
-
-
79951494668
-
Initial genome sequencing and analysis of multiple myeloma
-
Chapman M.A., Lawrence M.S., Keats J.J., Cibulskis K., Sougnez C., Schinzel A.C., Harview C.L., Brunet J.P., Ahmann G.J., Adli M., Anderson K.C., Ardlie K.G., Auclair D., Baker A., Bergsagel P.L., Bernstein B.E., Drier Y., Fonseca R., Gabriel S.B., Hofmeister C.C., Jagannath S., Jakubowiak A.J., Krishnan A., Levy J., Liefeld T., Lonial S., Mahan S., Mfuko B., Monti S., Perkins L.M., Onofrio R., Pugh T.J., Rajkumar S.V., Ramos A.H., Siegel D.S., Sivachenko A., Stewart A.K., Trudel S., Vij R., Voet D., Winckler W., Zimmerman T., Carpten J., Trent J., Hahn W.C., Garraway L.A., Meyerson M., Lander E.S., Getz G., Golub T.R. Initial genome sequencing and analysis of multiple myeloma. Nature 2011, 471:467-472.
-
(2011)
Nature
, vol.471
, pp. 467-472
-
-
Chapman, M.A.1
Lawrence, M.S.2
Keats, J.J.3
Cibulskis, K.4
Sougnez, C.5
Schinzel, A.C.6
Harview, C.L.7
Brunet, J.P.8
Ahmann, G.J.9
Adli, M.10
Anderson, K.C.11
Ardlie, K.G.12
Auclair, D.13
Baker, A.14
Bergsagel, P.L.15
Bernstein, B.E.16
Drier, Y.17
Fonseca, R.18
Gabriel, S.B.19
Hofmeister, C.C.20
Jagannath, S.21
Jakubowiak, A.J.22
Krishnan, A.23
Levy, J.24
Liefeld, T.25
Lonial, S.26
Mahan, S.27
Mfuko, B.28
Monti, S.29
Perkins, L.M.30
Onofrio, R.31
Pugh, T.J.32
Rajkumar, S.V.33
Ramos, A.H.34
Siegel, D.S.35
Sivachenko, A.36
Stewart, A.K.37
Trudel, S.38
Vij, R.39
Voet, D.40
Winckler, W.41
Zimmerman, T.42
Carpten, J.43
Trent, J.44
Hahn, W.C.45
Garraway, L.A.46
Meyerson, M.47
Lander, E.S.48
Getz, G.49
Golub, T.R.50
more..
-
103
-
-
79551681406
-
The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates
-
Basu U., Meng F.L., Keim C., Grinstein V., Pefanis E., Eccleston J., Zhang T., Myers D., Wasserman C.R., Wesemann D.R., Januszyk K., Gregory R.I., Deng H., Lima C.D., Alt F.W. The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates. Cell 2011, 144:353-363.
-
(2011)
Cell
, vol.144
, pp. 353-363
-
-
Basu, U.1
Meng, F.L.2
Keim, C.3
Grinstein, V.4
Pefanis, E.5
Eccleston, J.6
Zhang, T.7
Myers, D.8
Wasserman, C.R.9
Wesemann, D.R.10
Januszyk, K.11
Gregory, R.I.12
Deng, H.13
Lima, C.D.14
Alt, F.W.15
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