-
1
-
-
0033214175
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
-
Allmang C, Kufel J, Chanfreau G, Mitchell P, Petfalski E, Tollervey D (1999a) Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J 18: 5399-5410
-
(1999)
EMBO J
, vol.18
, pp. 5399-5410
-
-
Allmang, C.1
Kufel, J.2
Chanfreau, G.3
Mitchell, P.4
Petfalski, E.5
Tollervey, D.6
-
2
-
-
0033567131
-
The yeast exosome and human PM-Scl are related complexes of 3-5 exonucleases
-
Allmang C, Petfalski E, Podtelejnikov A, Mann M, Tollervey D, Mitchell P (1999b) The yeast exosome and human PM-Scl are related complexes of 3-5 exonucleases. Genes Dev 13: 2148-2158
-
(1999)
Genes Dev
, vol.13
, pp. 2148-2158
-
-
Allmang, C.1
Petfalski, E.2
Podtelejnikov, A.3
Mann, M.4
Tollervey, D.5
Mitchell, P.6
-
3
-
-
12544252211
-
A single mutation in Escherichia coli ribonuclease II inactivates the enzyme without affecting RNA binding
-
Amblar M, Arraiano CM (2005) A single mutation in Escherichia coli ribonuclease II inactivates the enzyme without affecting RNA binding. FEBS J 272: 363-374
-
(2005)
FEBS J
, vol.272
, pp. 363-374
-
-
Amblar, M.1
Arraiano, C.M.2
-
4
-
-
70350336247
-
The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation
-
Bonneau F, Basquin J, Ebert J, Lorentzen E, Conti E (2009) The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation. Cell 139: 547-559
-
(2009)
Cell
, vol.139
, pp. 547-559
-
-
Bonneau, F.1
Basquin, J.2
Ebert, J.3
Lorentzen, E.4
Conti, E.5
-
5
-
-
0035794216
-
Three novel components of the human exosome
-
Brouwer R, Allmang C, Raijmakers R, van AY, Vree Egberts W, Petfalski E, van Venrooij WJ, Tollervey D, Pruijn GJ (2001a) Three novel components of the human exosome. J Biol Chem 276: 6177-6184
-
(2001)
J Biol Chem
, vol.276
, pp. 6177-6184
-
-
Brouwer, R.1
Allmang, C.2
Raijmakers, R.3
Van, A.Y.4
Vree Egberts, W.5
Petfalski, E.6
Van Venrooij, W.J.7
Tollervey, D.8
Pruijn, G.J.9
-
6
-
-
0035080095
-
The human exosome: An autoantigenic complex of exoribonucleases in myo-sitis and scleroderma
-
Brouwer R, Pruijn GJ, van Venrooij WJ (2001b) The human exosome: an autoantigenic complex of exoribonucleases in myo-sitis and scleroderma. Arthritis Res 3: 102-106
-
(2001)
Arthritis Res
, vol.3
, pp. 102-106
-
-
Brouwer, R.1
Pruijn, G.J.2
Van Venrooij, W.J.3
-
7
-
-
57149094672
-
Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p
-
Callahan KP, Butler JS (2008) Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p. Nucleic Acids Res 36: 6645-6655
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6645-6655
-
-
Callahan, K.P.1
Butler, J.S.2
-
8
-
-
0034693061
-
Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells
-
Chekanova JA, Shaw RJ, Wills MA, Belostotsky DA (2000) Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells. J Biol Chem 275: 33158-33166
-
(2000)
J Biol Chem
, vol.275
, pp. 33158-33166
-
-
Chekanova, J.A.1
Shaw, R.J.2
Wills, M.A.3
Belostotsky, D.A.4
-
9
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, Pruijn GJ, Stoecklin G, Moroni C, Mann M, Karin M (2001) AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107: 451-464
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.Y.1
Gherzi, R.2
Ong, S.E.3
Chan, E.L.4
Raijmakers, R.5
Pruijn, G.J.6
Stoecklin, G.7
Moroni, C.8
Mann, M.9
Karin, M.10
-
10
-
-
0034649546
-
PIN domains in nonsense-mediated mRNA decay and RNAi
-
Clissold PM, Ponting CP (2000) PIN domains in nonsense-mediated mRNA decay and RNAi. Curr Biol 10: R888-R890
-
(2000)
Curr Biol
, vol.10
-
-
Clissold, P.M.1
Ponting, C.P.2
-
11
-
-
33846068920
-
A single subunit, Dis3, is essentially responsible for yeast exosome core activity
-
Dziembowski A, Lorentzen E, Conti E, Seraphin B (2007) A single subunit, Dis3, is essentially responsible for yeast exosome core activity. Nat Struct Mol Biol 14: 15-22
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 15-22
-
-
Dziembowski, A.1
Lorentzen, E.2
Conti, E.3
Seraphin, B.4
-
12
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
13
-
-
33748414894
-
Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex
-
Frazao C, McVey CE, Amblar M, Barbas A, Vonrhein C, Arraiano CM, Carrondo MA (2006) Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex. Nature 443: 110-114
-
(2006)
Nature
, vol.443
, pp. 110-114
-
-
Frazao, C.1
McVey, C.E.2
Amblar, M.3
Barbas, A.4
Vonrhein, C.5
Arraiano, C.M.6
Carrondo, M.A.7
-
14
-
-
33750490399
-
Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex
-
Glavan F, Behm-Ansmant I, Izaurralde E, Conti E (2006) Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex. EMBO J 25: 5117-5125
-
(2006)
EMBO J
, vol.25
, pp. 5117-5125
-
-
Glavan, F.1
Behm-Ansmant, I.2
Izaurralde, E.3
Conti, E.4
-
15
-
-
65349174674
-
Core exosome-indepen-dent roles for Rrp6 in cell cycle progression
-
Graham AC, Kiss DL, Andrulis ED (2009) Core exosome-indepen-dent roles for Rrp6 in cell cycle progression. Mol Biol Cell 20: 2242-2253
-
(2009)
Mol Biol Cell
, vol.20
, pp. 2242-2253
-
-
Graham, A.C.1
Kiss, D.L.2
Andrulis, E.D.3
-
16
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
LaCava J, Houseley J, Saveanu C, Petfalski E, Thompson E, Jacquier A, Tollervey D (2005) RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121: 713-724
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
Lacava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
Tollervey, D.7
-
18
-
-
0141819096
-
Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities
-
Lejeune F, Li X, Maquat LE (2003) Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities. Mol Cell 12: 675-687
-
(2003)
Mol Cell
, vol.12
, pp. 675-687
-
-
Lejeune, F.1
Li, X.2
Maquat, L.E.3
-
20
-
-
33845407784
-
Reconstitution, activities, and structure of the eukaryotic RNA exosome
-
Liu Q, Greimann JC, Lima CD (2006) Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell 127: 1223-1237
-
(2006)
Cell
, vol.127
, pp. 1223-1237
-
-
Liu, Q.1
Greimann, J.C.2
Lima, C.D.3
-
21
-
-
22144493835
-
The archaeal exosome core is a hexameric ring structure with three catalytic subunits
-
Lorentzen E, Walter P, Fribourg S, Evguenieva-Hackenberg E, Klug G, Conti E (2005) The archaeal exosome core is a hexameric ring structure with three catalytic subunits. Nat Struct Mol Biol 12: 575-581
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 575-581
-
-
Lorentzen, E.1
Walter, P.2
Fribourg, S.3
Evguenieva-Hackenberg, E.4
Klug, G.5
Conti, E.6
-
22
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 3-5 exoribonucleases
-
Mitchell P, Petfalski E, Shevchenko A, Mann M, Tollervey D (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3-5 exoribonucleases. Cell 91: 457-466
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
23
-
-
10544256607
-
Dis3, implicated in mitotic control, binds directly to Ran and enhances the GEF activity of RCC1
-
Noguchi E, Hayashi N, Azuma Y, Seki T, Nakamura M, Nakashima N, Yanagida M, He X, Mueller U, Sazer S, Nishimoto T (1996) Dis3, implicated in mitotic control, binds directly to Ran and enhances the GEF activity of RCC1. EMBO J 15: 5595-5605
-
(1996)
EMBO J
, vol.15
, pp. 5595-5605
-
-
Noguchi, E.1
Hayashi, N.2
Azuma, Y.3
Seki, T.4
Nakamura, M.5
Nakashima, N.6
Yanagida, M.7
He, X.8
Mueller, U.9
Sazer, S.10
Nishimoto, T.11
-
24
-
-
0036977391
-
Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring
-
Raijmakers R, Vree Egberts W, van Venrooij WJ, Pruijn GJ (2002) Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring. J Mol Biol 323: 653-663
-
(2002)
J Mol Biol
, vol.323
, pp. 653-663
-
-
Raijmakers, R.1
Vree Egberts, W.2
Van Venrooij, W.J.3
Pruijn, G.J.4
-
25
-
-
58149236691
-
The exosome contains domains with specific endoribonuclease, exoribonu-clease and cytoplasmic mRNA decay activities
-
Schaeffer D, Tsanova B, Barbas A, Reis FP, Dastidar EG, Sanchez-Rotunno M, Arraiano CM, van Hoof A (2009) The exosome contains domains with specific endoribonuclease, exoribonu-clease and cytoplasmic mRNA decay activities. Nat Struct Mol Biol 16: 56-62
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 56-62
-
-
Schaeffer, D.1
Tsanova, B.2
Barbas, A.3
Reis, F.P.4
Dastidar, E.G.5
Sanchez-Rotunno, M.6
Arraiano, C.M.7
Van Hoof, A.8
-
26
-
-
29244475356
-
MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation
-
Schilders G, Raijmakers R, Raats JM, Pruijn GJ (2005) MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation. Nucleic Acids Res 33: 6795-6804
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6795-6804
-
-
Schilders, G.1
Raijmakers, R.2
Raats, J.M.3
Pruijn, G.J.4
-
27
-
-
33747874661
-
Cell and molecular biology of the exosome: How to make or break an RNA
-
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ (2006) Cell and molecular biology of the exosome: how to make or break an RNA. Int Rev Cytol 251: 159-208
-
(2006)
Int Rev Cytol
, vol.251
, pp. 159-208
-
-
Schilders, G.1
Van Dijk, E.2
Raijmakers, R.3
Pruijn, G.J.4
-
28
-
-
62049085366
-
The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome
-
Schneider C, Leung E, Brown J, Tollervey D (2009) The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome. Nucleic Acids Res 37: 1127-1140
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1127-1140
-
-
Schneider, C.1
Leung, E.2
Brown, J.3
Tollervey, D.4
-
29
-
-
0031970587
-
Human dis3p, which binds to either GTP-or GDP-Ran, complements Saccharomyces cerevisiae dis3
-
Shiomi T, Fukushima K, Suzuki N, Nakashima N, Noguchi E, Nishimoto T (1998) Human dis3p, which binds to either GTP-or GDP-Ran, complements Saccharomyces cerevisiae dis3. J Biochem 123: 883-890
-
(1998)
J Biochem
, vol.123
, pp. 883-890
-
-
Shiomi, T.1
Fukushima, K.2
Suzuki, N.3
Nakashima, N.4
Noguchi, E.5
Nishimoto, T.6
-
30
-
-
77952170843
-
Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells
-
Slomovic S, Fremder E, Staals RH, Pruijn GJ, Schuster G (2010) Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells. Proc Natl Acad Sci USA 107: 7407-7412
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 7407-7412
-
-
Slomovic, S.1
Fremder, E.2
Staals, R.H.3
Pruijn, G.J.4
Schuster, G.5
-
32
-
-
38649115643
-
Stable PNPase RNAi silencing: Its effect on the processing and adenylation of human mitochondrial RNA
-
Slomovic S, Schuster G (2008) Stable PNPase RNAi silencing: its effect on the processing and adenylation of human mitochondrial RNA. RNA 14: 310-323
-
(2008)
RNA
, vol.14
, pp. 310-323
-
-
Slomovic, S.1
Schuster, G.2
-
33
-
-
58149344947
-
Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes
-
Synowsky SA, van WM, Raijmakers R, Heck AJ (2009) Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes. J Mol Biol 385: 1300-1313
-
(2009)
J Mol Biol
, vol.385
, pp. 1300-1313
-
-
Synowsky, S.A.1
Van Wm Raijmakers, R.2
Heck, A.J.3
-
35
-
-
77954877566
-
The human core exosome interacts with differentially localized processive RNases: HDIS3 and hDIS3L
-
Tomecki R, Kristiansen MS, Lykke-Andersen S, Chlebowski A, Larsen KM, Szczesny RJ, Draskowska K, Pastula A, Andersen JS, Stepien PP, Dziembowski A, Jensen TH (2010) The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L. EMBO J 29: 2342-2357
-
(2010)
EMBO J
, vol.29
, pp. 2342-2357
-
-
Tomecki, R.1
Kristiansen, M.S.2
Lykke-Andersen, S.3
Chlebowski, A.4
Larsen, K.M.5
Szczesny, R.J.6
Draskowska, K.7
Pastula, A.8
Andersen, J.S.9
Stepien, P.P.10
Dziembowski, A.11
Jensen, T.H.12
-
36
-
-
34250888278
-
Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways
-
van Dijk EL, Schilders G, Pruijn GJ (2007) Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways. RNA 13: 1027-1035
-
(2007)
RNA
, vol.13
, pp. 1027-1035
-
-
Van Dijk, E.L.1
Schilders, G.2
Pruijn, G.J.3
-
37
-
-
0037155584
-
Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
-
van Hoof A., Frischmeyer PA, Dietz HC, Parker R, Allmang C (2002) Exosome-mediated recognition and degradation of mRNAs lacking a termination codon. Science 295: 2262-2264
-
(2002)
Science
, vol.295
, pp. 2262-2264
-
-
Van Hoof, A.1
Frischmeyer, P.A.2
Dietz, H.C.3
Parker, R.4
Allmang, C.5
-
38
-
-
65449188232
-
Jalview Version 2\a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ (2009) Jalview Version 2\a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
|