메뉴 건너뛰기




Volumn 18, Issue 21, 2004, Pages 2652-2662

Genome-wide mRNA surveillance is coupled to mRNA export

Author keywords

DNA repair; Lrp1; mRNA export; mRNA surveillance; Nuclear exosome; Rrp6

Indexed keywords

BIOLOGICAL FACTOR; DNA; DNA REPAIR PROTEIN; LRP1 PROTEIN; MESSENGER RNA; MESSENGER RNA SURVEILLANCE FACTOR; PROTEIN; RRP6 PROTEIN; UNCLASSIFIED DRUG;

EID: 7544236961     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.1241204     Document Type: Article
Times cited : (89)

References (55)
  • 1
    • 0033567131 scopus 로고    scopus 로고
    • The yeast exosome and human PM-Scl are related complexes of 3′ → 5′ exonucleases
    • Allmang, C., Petfalski, E., Podtelejnikov, A., Mann, M., Tollervey, D., and Mitchell, P. 1999. The yeast exosome and human PM-Scl are related complexes of 3′ → 5′ exonucleases. Genes Dev. 13: 2148-2158.
    • (1999) Genes Dev. , vol.13 , pp. 2148-2158
    • Allmang, C.1    Petfalski, E.2    Podtelejnikov, A.3    Mann, M.4    Tollervey, D.5    Mitchell, P.6
  • 2
    • 0026655521 scopus 로고
    • Isolation and characterization of RAT1: An essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA
    • Amberg, D.C., Goldstein, A.L., and Cole, C.N. 1992. Isolation and characterization of RAT1: An essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA. Genes & Dev. 6: 1173-1189.
    • (1992) Genes & Dev. , vol.6 , pp. 1173-1189
    • Amberg, D.C.1    Goldstein, A.L.2    Cole, C.N.3
  • 3
    • 0000577868 scopus 로고    scopus 로고
    • The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex
    • Anderson, J.S. and Parker, R.P. 1998. The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J. 17: 1497-1506.
    • (1998) EMBO J. , vol.17 , pp. 1497-1506
    • Anderson, J.S.1    Parker, R.P.2
  • 4
    • 0037180825 scopus 로고    scopus 로고
    • The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila
    • Andrulis, E.D., Werner, J., Nazarian, A., Erdjument-Bromage, H., Tempst, P., and Lis, J.T. 2002. The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila. Nature 420: 837-841.
    • (2002) Nature , vol.420 , pp. 837-841
    • Andrulis, E.D.1    Werner, J.2    Nazarian, A.3    Erdjument-Bromage, H.4    Tempst, P.5    Lis, J.T.6
  • 5
    • 0029040211 scopus 로고
    • A novel gene, Translin, encodes a recombination hotspot binding protein associated with chromosomal translocations
    • Aoki, K., Suzuki, K., Sugano, T., Tasaka, T., Nakahara, K., Kuge, O., Omori, A., and Kasai, M. 1995. A novel gene, Translin, encodes a recombination hotspot binding protein associated with chromosomal translocations. Nat. Genet. 10: 167-174.
    • (1995) Nat. Genet. , vol.10 , pp. 167-174
    • Aoki, K.1    Suzuki, K.2    Sugano, T.3    Tasaka, T.4    Nakahara, K.5    Kuge, O.6    Omori, A.7    Kasai, M.8
  • 6
    • 4344714328 scopus 로고    scopus 로고
    • The yeast Apq12 protein affects nucleocytoplasmic mRNA transport
    • Baker, K.E., Coller, J., and Parker, R. 2004. The yeast Apq12 protein affects nucleocytoplasmic mRNA transport. RNA. 10: 1352-1358.
    • (2004) RNA , vol.10 , pp. 1352-1358
    • Baker, K.E.1    Coller, J.2    Parker, R.3
  • 8
    • 0032557455 scopus 로고    scopus 로고
    • Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′ end formation
    • Briggs, M.W., Burkard, K.T., and Butler, J.S. 1998. Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′ end formation. J. Biol. Chem. 273: 13255-13263.
    • (1998) J. Biol. Chem. , vol.273 , pp. 13255-13263
    • Briggs, M.W.1    Burkard, K.T.2    Butler, J.S.3
  • 9
    • 0033960962 scopus 로고    scopus 로고
    • A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Np13p
    • Burkard, K.T. and Butler, J.S. 2000. A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Np13p. Mol. Cell. Biol. 20: 604-616.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 604-616
    • Burkard, K.T.1    Butler, J.S.2
  • 10
    • 0036469214 scopus 로고    scopus 로고
    • The yin and yang of the exosome
    • Butler, J.S. 2002. The yin and yang of the exosome. Trends Cell. Biol. 12: 90-96.
    • (2002) Trends Cell. Biol. , vol.12 , pp. 90-96
    • Butler, J.S.1
  • 11
    • 2342501365 scopus 로고    scopus 로고
    • Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization
    • Casolari, J.M., Brown, C.R., Komili, S., West, J., Hieronymus, H., and Silver, P.A. 2004. Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization. Cell 117: 427-439.
    • (2004) Cell , vol.117 , pp. 427-439
    • Casolari, J.M.1    Brown, C.R.2    Komili, S.3    West, J.4    Hieronymus, H.5    Silver, P.A.6
  • 12
    • 0032907104 scopus 로고    scopus 로고
    • A complex containing RNA polymerase II, Paf1p, Cdc73p, Hpr1p, and Ccr4p plays a role in protein kinase C signaling
    • Chang, M., French-Cornay, D., Fan, H.Y., Klein, H., Denis, C.L., and Jaehning, J.A. 1999. A complex containing RNA polymerase II, Paf1p, Cdc73p, Hpr1p, and Ccr4p plays a role in protein kinase C signaling. Mol. Cell. Biol. 19: 1056-1067.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1056-1067
    • Chang, M.1    French-Cornay, D.2    Fan, H.Y.3    Klein, H.4    Denis, C.L.5    Jaehning, J.A.6
  • 13
    • 0031439267 scopus 로고    scopus 로고
    • The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability
    • Chavez, S. and Aguilera, A. 1997. The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability. Genes & Dev. 11: 3459-3470.
    • (1997) Genes & Dev. , vol.11 , pp. 3459-3470
    • Chavez, S.1    Aguilera, A.2
  • 14
    • 0035918307 scopus 로고    scopus 로고
    • Trax (translin-associated factor X), a primarily cytoplasmic protein, inhibits the binding of TB-RBP (translin) to RNA
    • Chennathukuzhi, V.M., Kurihara, Y., Bray, J.D., and Hecht, N.B. 2001. Trax (translin-associated factor X), a primarily cytoplasmic protein, inhibits the binding of TB-RBP (translin) to RNA. J. Biol. Chem. 276: 13256-13263.
    • (2001) J. Biol. Chem. , vol.276 , pp. 13256-13263
    • Chennathukuzhi, V.M.1    Kurihara, Y.2    Bray, J.D.3    Hecht, N.B.4
  • 15
    • 0042632964 scopus 로고    scopus 로고
    • Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae
    • Das, B., Butler, J.S., and Sherman, F. 2003. Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae. Mol. Cell. Biol. 23: 5502-5515.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 5502-5515
    • Das, B.1    Butler, J.S.2    Sherman, F.3
  • 16
    • 1842610010 scopus 로고    scopus 로고
    • Nucleocytoplasmic transport: Integrating mRNA production and turnover with export through the nuclear pore
    • Dimaano, C. and Ullman, K.S. 2004. Nucleocytoplasmic transport: Integrating mRNA production and turnover with export through the nuclear pore. Mol. Cell. Biol. 24: 3069-3076.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 3069-3076
    • Dimaano, C.1    Ullman, K.S.2
  • 17
    • 0036436084 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae C1D is implicated in both non-homologous DNA end joining and homologous recombination
    • Erdemir, T., Bilican, B., Cagatay, T., Goding, C.R., and Yavuzer, U. 2002. Saccharomyces cerevisiae C1D is implicated in both non-homologous DNA end joining and homologous recombination. Mol. Microbiol. 46: 947-957.
    • (2002) Mol. Microbiol. , vol.46 , pp. 947-957
    • Erdemir, T.1    Bilican, B.2    Cagatay, T.3    Goding, C.R.4    Yavuzer, U.5
  • 18
    • 0742304306 scopus 로고    scopus 로고
    • Nuclear retention of unspliced mRNAs in yeast is mediated by perinuclear Mlp1
    • Galy, V., Gadal, O., Fromont-Racine, M., Romano, A., Jacquier, A., and Nehrbass, U. 2004. Nuclear retention of unspliced mRNAs in yeast is mediated by perinuclear Mlp1. Cell 116: 63-73.
    • (2004) Cell , vol.116 , pp. 63-73
    • Galy, V.1    Gadal, O.2    Fromont-Racine, M.3    Romano, A.4    Jacquier, A.5    Nehrbass, U.6
  • 22
    • 0037313537 scopus 로고    scopus 로고
    • Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery
    • Hieronymus, H. and Silver, P.A. 2003. Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery. Nat. Genet. 33: 155-161.
    • (2003) Nat. Genet. , vol.33 , pp. 155-161
    • Hieronymus, H.1    Silver, P.A.2
  • 23
    • 0037821181 scopus 로고    scopus 로고
    • Risk of cancer in patients with scleroderma: A population based cohort study
    • Hill, C.L., Nguyen, A.M., Roder, D., and Roberts-Thomson, P. 2003. Risk of cancer in patients with scleroderma: A population based cohort study. Ann. Rheum. Dis. 62: 728-731.
    • (2003) Ann. Rheum. Dis. , vol.62 , pp. 728-731
    • Hill, C.L.1    Nguyen, A.M.2    Roder, D.3    Roberts-Thomson, P.4
  • 24
    • 0035807308 scopus 로고    scopus 로고
    • Quality control of mRNA 3′-end processing is linked to the nuclear exosome
    • Hilleren, P., McCarthy, T., Rosbash, M., Parker, R., and Jensen, T.H. 2001. Quality control of mRNA 3′-end processing is linked to the nuclear exosome. Nature 413: 538-542.
    • (2001) Nature , vol.413 , pp. 538-542
    • Hilleren, P.1    McCarthy, T.2    Rosbash, M.3    Parker, R.4    Jensen, T.H.5
  • 25
    • 0141819093 scopus 로고    scopus 로고
    • Cotranscriptionally formed DNA:RNA hybrids mediate transcription elongation impairment and transcription-associated recombination
    • Huertas, P. and Aguilera, A. 2003. Cotranscriptionally formed DNA:RNA hybrids mediate transcription elongation impairment and transcription-associated recombination. Mol. Cell 12: 711-721.
    • (2003) Mol. Cell , vol.12 , pp. 711-721
    • Huertas, P.1    Aguilera, A.2
  • 26
    • 0034388027 scopus 로고    scopus 로고
    • Spt4 modulates Rad26 requirement in transcription-coupled nucleotide excision repair
    • Jansen, L.E., den Dulk, H., Brouns, R.M., de Ruijter, M., Brandsma, J.A., and Brouwer, J. 2000. Spt4 modulates Rad26 requirement in transcription-coupled nucleotide excision repair. EMBO J. 19: 6498-6507.
    • (2000) EMBO J. , vol.19 , pp. 6498-6507
    • Jansen, L.E.1    Den Dulk, H.2    Brouns, R.M.3    De Ruijter, M.4    Brandsma, J.A.5    Brouwer, J.6
  • 27
    • 0035022577 scopus 로고    scopus 로고
    • A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription
    • Jensen, T.H., Patricio, K., McCarthy, T., and Rosbash, M. 2001. A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription. Mol. Cell 7: 887-898.
    • (2001) Mol. Cell , vol.7 , pp. 887-898
    • Jensen, T.H.1    Patricio, K.2    McCarthy, T.3    Rosbash, M.4
  • 28
    • 0036645687 scopus 로고    scopus 로고
    • The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability
    • Jimeno, S., Rondon, A.G., Luna, R., and Aguilera, A. 2002. The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability. EMBO J. 21: 3526-3535.
    • (2002) EMBO J. , vol.21 , pp. 3526-3535
    • Jimeno, S.1    Rondon, A.G.2    Luna, R.3    Aguilera, A.4
  • 29
    • 0036289532 scopus 로고    scopus 로고
    • Eukaryotic mRNPs may represent post-transcriptional operons
    • Keene, J.D. and Tenenbaum, S.A. 2002. Eukaryotic mRNPs may represent post-transcriptional operons. Mol Cell 9: 1161-1167.
    • (2002) Mol. Cell , vol.9 , pp. 1161-1167
    • Keene, J.D.1    Tenenbaum, S.A.2
  • 30
    • 0043244876 scopus 로고    scopus 로고
    • Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage
    • Kettenberger, H., Armache, K.J., and Cramer, P. 2003. Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage. Cell 114: 347-357.
    • (2003) Cell , vol.114 , pp. 347-357
    • Kettenberger, H.1    Armache, K.J.2    Cramer, P.3
  • 31
    • 0001221269 scopus 로고    scopus 로고
    • Functional interaction of BRCA1-associated BARD1 wi1h polyadenylation factor CstF-50
    • Kleiman, F.E. and Manley, J.L. 1999. Functional interaction of BRCA1-associated BARD1 wi1h polyadenylation factor CstF-50. Science 285: 1576-1579.
    • (1999) Science , vol.285 , pp. 1576-1579
    • Kleiman, F.E.1    Manley, J.L.2
  • 32
    • 2942614836 scopus 로고    scopus 로고
    • Polyadenylation of rRNA in Saccharomyces cerevisiae
    • Kuai, L., Fang, F., Butler, J.S., and Sherman, F. 2004. Polyadenylation of rRNA in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. 101: 8581-8586.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 8581-8586
    • Kuai, L.1    Fang, F.2    Butler, J.S.3    Sherman, F.4
  • 34
    • 0036889142 scopus 로고    scopus 로고
    • Interactions between mRNA export commitment, 3′-end quality control, and nuclear degradation
    • Libri, D., Dower, K., Boulay, J., Thomsen, R., Rosbash, M., and Jensen, T.H. 2002. Interactions between mRNA export commitment, 3′-end quality control, and nuclear degradation. Mol. Cell. Biol. 22: 8254-8266.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 8254-8266
    • Libri, D.1    Dower, K.2    Boulay, J.3    Thomsen, R.4    Rosbash, M.5    Jensen, T.H.6
  • 36
    • 0242298316 scopus 로고    scopus 로고
    • DNA helicase gene interaction network defined using synthetic lethality analyzed by microarray
    • Ooi, S.L., Shoemaker, D.D., and Boeke, J.D. 2003. DNA helicase gene interaction network defined using synthetic lethality analyzed by microarray. Nat. Genet. 35: 277-286.
    • (2003) Nat. Genet. , vol.35 , pp. 277-286
    • Ooi, S.L.1    Shoemaker, D.D.2    Boeke, J.D.3
  • 38
    • 0038699144 scopus 로고    scopus 로고
    • Coupling transcription, splicing and mRNA export
    • Reed, R. 2003. Coupling transcription, splicing and mRNA export. Curr. Opin. Cell Biol. 15: 326-331.
    • (2003) Curr. Opin. Cell Biol. , vol.15 , pp. 326-331
    • Reed, R.1
  • 41
    • 0035846109 scopus 로고    scopus 로고
    • Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p
    • Strasser, K. and Hurt, E. 2001. Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p. Nature 413: 648-652.
    • (2001) Nature , vol.413 , pp. 648-652
    • Strasser, K.1    Hurt, E.2
  • 43
    • 0036363646 scopus 로고    scopus 로고
    • Mechanisms of transcription-coupled DNA repair
    • Svejstrup, J.Q. 2002. Mechanisms of transcription-coupled DNA repair. Nat. Rev. Mol. Cell. Biol. 3: 21-29.
    • (2002) Nat. Rev. Mol. Cell. Biol. , vol.3 , pp. 21-29
    • Svejstrup, J.Q.1
  • 44
    • 0037326318 scopus 로고    scopus 로고
    • Rescue of arrested RNA polymerase II complexes
    • -. 2003. Rescue of arrested RNA polymerase II complexes. J. Cell Sci. 116: 447-451.
    • (2003) J. Cell Sci. , vol.116 , pp. 447-451
  • 45
    • 0026486603 scopus 로고
    • Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription
    • Sweder, K.S. and Hanawalt, P.C. 1992. Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc. Natl. Acad. Sci. 89: 10696-10700.
    • (1992) Proc. Natl. Acad. Sci. , vol.89 , pp. 10696-10700
    • Sweder, K.S.1    Hanawalt, P.C.2
  • 46
    • 0041832131 scopus 로고    scopus 로고
    • Localization of nuclear retained mRNAs in Saccharomyces cerevisiae
    • Thomsen, R., Libri, D., Boulay, J., Rosbash, M., and Jensen, T.H. 2003. Localization of nuclear retained mRNAs in Saccharomyces cerevisiae. RNA 9: 1049-1057.
    • (2003) RNA , vol.9 , pp. 1049-1057
    • Thomsen, R.1    Libri, D.2    Boulay, J.3    Rosbash, M.4    Jensen, T.H.5
  • 48
    • 0035983990 scopus 로고    scopus 로고
    • Processing of 3′-extended read-through transcripts by the exosome can generate functional mRNAs
    • Torchet, C., Bousquet-Antonelli, C., Milligan, L., Thompson, E., Kufel, J., and Tollervey, D. 2002. Processing of 3′-extended read-through transcripts by the exosome can generate functional mRNAs. Mol. Cell 9: 1285-1296.
    • (2002) Mol. Cell , vol.9 , pp. 1285-1296
    • Torchet, C.1    Bousquet-Antonelli, C.2    Milligan, L.3    Thompson, E.4    Kufel, J.5    Tollervey, D.6
  • 49
    • 0033981301 scopus 로고    scopus 로고
    • Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
    • van Hoof, A., Lennertz, P., and Parker, R. 2000. Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Mol. Cell Biol. 20: 441-452.
    • (2000) Mol. Cell Biol. , vol.20 , pp. 441-452
    • Van Hoof, A.1    Lennertz, P.2    Parker, R.3
  • 50
    • 2342523175 scopus 로고    scopus 로고
    • mRNA export: An assembly line from genes to nuclear pores
    • Vinciguerra, P. and Stutz, F. 2004. mRNA export: An assembly line from genes to nuclear pores. Curr. Opin. Cell. Biol. 16: 285-292.
    • (2004) Curr. Opin. Cell. Biol. , vol.16 , pp. 285-292
    • Vinciguerra, P.1    Stutz, F.2
  • 55
    • 0036889334 scopus 로고    scopus 로고
    • Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p
    • Zenklusen, D., Vinciguerra, P., Wyss, J.C., and Stutz, F. 2002. Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p. Mol. Cell Biol. 22: 8241-8253.
    • (2002) Mol. Cell Biol. , vol.22 , pp. 8241-8253
    • Zenklusen, D.1    Vinciguerra, P.2    Wyss, J.C.3    Stutz, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.