-
1
-
-
0033214175
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
-
Allmang C., Kufel J., Chanfreau G., Mitchell P., Patfalksi E., and Tollervey D. Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J. 18 (1999) 5399-5410
-
(1999)
EMBO J.
, vol.18
, pp. 5399-5410
-
-
Allmang, C.1
Kufel, J.2
Chanfreau, G.3
Mitchell, P.4
Patfalksi, E.5
Tollervey, D.6
-
2
-
-
0036023943
-
A complex prediction: three-dimensional model of the yeast exosome
-
Aloy P., Ciccarelli F.D., Leutwein C., Gavin A.C., Superti-Furga G., Bork P., Bottcher B., and Russell R.B. A complex prediction: three-dimensional model of the yeast exosome. EMBO Rep. 3 (2002) 628-635
-
(2002)
EMBO Rep.
, vol.3
, pp. 628-635
-
-
Aloy, P.1
Ciccarelli, F.D.2
Leutwein, C.3
Gavin, A.C.4
Superti-Furga, G.5
Bork, P.6
Bottcher, B.7
Russell, R.B.8
-
3
-
-
0000577868
-
The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex
-
Anderson J.S., and Parker R. The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J. 17 (1998) 1497-1506
-
(1998)
EMBO J.
, vol.17
, pp. 1497-1506
-
-
Anderson, J.S.1
Parker, R.2
-
4
-
-
33749265977
-
Sequence-specific RNA binding mediated by the RNase PH domain of components of the exosome
-
Anderson J.R., Mukherjee D., Muthukumaraswamy K., Moraes K.C., Wilusz C.J., and Wilusz J. Sequence-specific RNA binding mediated by the RNase PH domain of components of the exosome. RNA 12 (2006) 1810-1816
-
(2006)
RNA
, vol.12
, pp. 1810-1816
-
-
Anderson, J.R.1
Mukherjee, D.2
Muthukumaraswamy, K.3
Moraes, K.C.4
Wilusz, C.J.5
Wilusz, J.6
-
5
-
-
33845425178
-
Ski7p protein interacts with the exosome and the Ski complex for 3′ to 5′ mRNA decay in yeast
-
Araki Y., Takahashi S., Kobayashi T., Kajiho H., Hoshino S., and Katada T. Ski7p protein interacts with the exosome and the Ski complex for 3′ to 5′ mRNA decay in yeast. J. Biol. Chem. 277 (2001) 21624-21629
-
(2001)
J. Biol. Chem.
, vol.277
, pp. 21624-21629
-
-
Araki, Y.1
Takahashi, S.2
Kobayashi, T.3
Kajiho, H.4
Hoshino, S.5
Katada, T.6
-
6
-
-
0029053016
-
Degradation of mRNA in Eukaryotes
-
Beelman C.A., and Parker R. Degradation of mRNA in Eukaryotes. Cell 81 (1995) 179-183
-
(1995)
Cell
, vol.81
, pp. 179-183
-
-
Beelman, C.A.1
Parker, R.2
-
7
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D54 (1998) 905-921
-
(1998)
Acta Crystallogr.
, vol.D54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
8
-
-
0033960962
-
A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p
-
Burkard K.T., and Butler J.S. A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p. Mol. Cell. Biol. 20 (2000) 604-616
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 604-616
-
-
Burkard, K.T.1
Butler, J.S.2
-
9
-
-
27644435644
-
Structural framework for the mechanism of Archaeal exosomes in RNA processing
-
Buttner K., Wenig K., and Hopfner K.-P. Structural framework for the mechanism of Archaeal exosomes in RNA processing. Mol. Cell 20 (2005) 461-471
-
(2005)
Mol. Cell
, vol.20
, pp. 461-471
-
-
Buttner, K.1
Wenig, K.2
Hopfner, K.-P.3
-
10
-
-
13844267637
-
Determining the structure of an unliganded and fully glycosylated SIV gp120 envelope glycoprotein
-
Chen B., Vogan E.M., Gong H., Skehel J.J., Wiley D.C., and Harrison S.C. Determining the structure of an unliganded and fully glycosylated SIV gp120 envelope glycoprotein. Structure 13 (2005) 197-211
-
(2005)
Structure
, vol.13
, pp. 197-211
-
-
Chen, B.1
Vogan, E.M.2
Gong, H.3
Skehel, J.J.4
Wiley, D.C.5
Harrison, S.C.6
-
11
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
Chen C., Gherzi R., Ong S., Chan E.L., Raijmakers R., Pruijn G.J.M., Stoecklin G., Moroni C., Mann M., and Karin M. AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107 (2001) 451-464
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.1
Gherzi, R.2
Ong, S.3
Chan, E.L.4
Raijmakers, R.5
Pruijn, G.J.M.6
Stoecklin, G.7
Moroni, C.8
Mann, M.9
Karin, M.10
-
12
-
-
12344330602
-
An important role for RNase R in mRNA decay
-
Cheng Z.F., and Deutscher M.P. An important role for RNase R in mRNA decay. Mol. Cell 17 (2005) 313-318
-
(2005)
Mol. Cell
, vol.17
, pp. 313-318
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
13
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project
-
Collaborative Computational Project. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D50 (1994) 760-763
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 760-763
-
-
-
15
-
-
33746414364
-
Considerations for the refinement of low-resolution crystal structuers
-
DeLaBarre B., and Brunger A.T. Considerations for the refinement of low-resolution crystal structuers. Acta Crystallogr. D Biol. Crystallogr. 62 (2006) 923-932
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 923-932
-
-
DeLaBarre, B.1
Brunger, A.T.2
-
17
-
-
0042317221
-
The roles of intersubunit interactions in exosome stability
-
Estevez A.M., Lehner B., Sanderson C.M., Ruppert T., and Clayton C. The roles of intersubunit interactions in exosome stability. J. Biol. Chem. 278 (2003) 34943-34951
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 34943-34951
-
-
Estevez, A.M.1
Lehner, B.2
Sanderson, C.M.3
Ruppert, T.4
Clayton, C.5
-
18
-
-
0142217167
-
An exosome-like complex in Solufolobus solfataricus
-
Evguenieve-Hackenberg E., Walter P., Hochleitner E., Lottspeich F., and Klug G. An exosome-like complex in Solufolobus solfataricus. EMBO Rep. 4 (2003) 889-893
-
(2003)
EMBO Rep.
, vol.4
, pp. 889-893
-
-
Evguenieve-Hackenberg, E.1
Walter, P.2
Hochleitner, E.3
Lottspeich, F.4
Klug, G.5
-
19
-
-
33644854765
-
Differential distribution of exosome subunits at the nuclear lamina and in cytoplasmic foci
-
Graham A.C., Kiss D.L., and Andrulis E.D. Differential distribution of exosome subunits at the nuclear lamina and in cytoplasmic foci. Mol. Biol. Cell 17 (2006) 1399-1409
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 1399-1409
-
-
Graham, A.C.1
Kiss, D.L.2
Andrulis, E.D.3
-
20
-
-
0025262173
-
Selenomethionyl proteins produced for anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure
-
Hendrickson W.A., Horton J.R., and LeMaster D.M. Selenomethionyl proteins produced for anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure. EMBO J. 9 (1990) 1665-1672
-
(1990)
EMBO J.
, vol.9
, pp. 1665-1672
-
-
Hendrickson, W.A.1
Horton, J.R.2
LeMaster, D.M.3
-
21
-
-
33744816815
-
Subunit architecture of multimeric complexes isolated directly from cells
-
Hernandez H., Dziembowski A., Taverner T., Seraphin B., and Robinson C.V. Subunit architecture of multimeric complexes isolated directly from cells. EMBO Rep. 7 (2006) 605-610
-
(2006)
EMBO Rep.
, vol.7
, pp. 605-610
-
-
Hernandez, H.1
Dziembowski, A.2
Taverner, T.3
Seraphin, B.4
Robinson, C.V.5
-
22
-
-
0033375911
-
Mechanisms of mRNA surveillance in eukaryotes
-
Hilleren P., and Parker R. Mechanisms of mRNA surveillance in eukaryotes. Annu. Rev. Genet. 33 (1999) 229-260
-
(1999)
Annu. Rev. Genet.
, vol.33
, pp. 229-260
-
-
Hilleren, P.1
Parker, R.2
-
23
-
-
0037117474
-
A protein subunit of human RNase P, Rpp14, and its interacting partner, OIP2, have 3′→5′ exoribonuclease activity
-
Jiang T., and Altman S. A protein subunit of human RNase P, Rpp14, and its interacting partner, OIP2, have 3′→5′ exoribonuclease activity. Proc. Natl. Acad. Sci. USA 99 (2002) 5295-5300
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5295-5300
-
-
Jiang, T.1
Altman, S.2
-
24
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47 (1991) 110-118
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 110-118
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
25
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
LaCava J., Houseley J., Saveanu C., Petfalski E., Thompson E., Jacquier A., and Tollervey D. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121 (2005) 713-724
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
LaCava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
Tollervey, D.7
-
26
-
-
23144448512
-
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures
-
Landau M., Mayrose I., Rosenberg Y., Glaser F., Martz E., Pupko T., and Ben-Tal N. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids. Res. 33 (2005) W299-W302
-
(2005)
Nucleic Acids. Res.
, vol.33
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
Glaser, F.4
Martz, E.5
Pupko, T.6
Ben-Tal, N.7
-
27
-
-
0030831990
-
Structure-based analysis of catalysis and substrate definition in the HIT protein family
-
Lima C.D., Klein M.D., and Hendrickson W.A. Structure-based analysis of catalysis and substrate definition in the HIT protein family. Science 278 (1997) 286-290
-
(1997)
Science
, vol.278
, pp. 286-290
-
-
Lima, C.D.1
Klein, M.D.2
Hendrickson, W.A.3
-
28
-
-
22144493835
-
The archaeal exosome core is a hexameric ring structure with three catalytic subunits
-
Lorentzen E., Walter P., Fribourg S., Evguenieve-Hackenberg E., Klug G., and Conti E. The archaeal exosome core is a hexameric ring structure with three catalytic subunits. Nat. Struct. Mol. Biol. 12 (2005) 575-581
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 575-581
-
-
Lorentzen, E.1
Walter, P.2
Fribourg, S.3
Evguenieve-Hackenberg, E.4
Klug, G.5
Conti, E.6
-
29
-
-
27644496002
-
Structural basis of 3′ end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core
-
Lorentzen E., and Conti E. Structural basis of 3′ end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core. Mol. Cell 20 (2005) 473-481
-
(2005)
Mol. Cell
, vol.20
, pp. 473-481
-
-
Lorentzen, E.1
Conti, E.2
-
30
-
-
33646523370
-
The exosome and the proteasome: nano-compartments for degradation
-
Lorentzen E., and Conti E. The exosome and the proteasome: nano-compartments for degradation. Cell 125 (2006) 651-654
-
(2006)
Cell
, vol.125
, pp. 651-654
-
-
Lorentzen, E.1
Conti, E.2
-
31
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′→5′ exoribonucleases
-
Mitchell P., Petfalsky E., Shevchenki A., Mann M., and Tollervey D. The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′→5′ exoribonucleases. Cell 91 (1997) 457-466
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalsky, E.2
Shevchenki, A.3
Mann, M.4
Tollervey, D.5
-
32
-
-
24644502657
-
From birth to death: the complex lives of eukaryotic mRNAs
-
Moore M.J. From birth to death: the complex lives of eukaryotic mRNAs. Science 309 (2005) 1514-1518
-
(2005)
Science
, vol.309
, pp. 1514-1518
-
-
Moore, M.J.1
-
33
-
-
0033638223
-
Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast
-
Mossessova E., and Lima C.D. Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast. Mol. Cell 5 (2000) 865-876
-
(2000)
Mol. Cell
, vol.5
, pp. 865-876
-
-
Mossessova, E.1
Lima, C.D.2
-
34
-
-
0026319199
-
Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A., Sharp K.A., and Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins. 11 (1991) 281-296
-
(1991)
Proteins.
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
35
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
36
-
-
4344573414
-
The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm
-
Raijmakers R., Schilders G., and Pruijn G.J. The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm. Eur. J. Cell Biol. 83 (2004) 175-183
-
(2004)
Eur. J. Cell Biol.
, vol.83
, pp. 175-183
-
-
Raijmakers, R.1
Schilders, G.2
Pruijn, G.J.3
-
37
-
-
0036977391
-
Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring
-
Raijmakers R., Egberts W.V., van Venrooij W.J., and Pruijn G.J. Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring. J. Biol. Chem. 323 (2002) 653-663
-
(2002)
J. Biol. Chem.
, vol.323
, pp. 653-663
-
-
Raijmakers, R.1
Egberts, W.V.2
van Venrooij, W.J.3
Pruijn, G.J.4
-
38
-
-
0034435974
-
A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation
-
Symmons M.F., Jones G.H., and Luisi B.F. A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation. Structure 8 (2000) 1215-1226
-
(2000)
Structure
, vol.8
, pp. 1215-1226
-
-
Symmons, M.F.1
Jones, G.H.2
Luisi, B.F.3
-
39
-
-
0347383761
-
SOLVE and RESOLVE: automated structure solution and density modification
-
Terwilliger T.C. SOLVE and RESOLVE: automated structure solution and density modification. Methods Enzymol. 374 (2003) 22-37
-
(2003)
Methods Enzymol.
, vol.374
, pp. 22-37
-
-
Terwilliger, T.C.1
-
40
-
-
0033981301
-
Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
-
van Hoof A., Lennertz P., and Parker R. Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Mol. Cell. Biol. 20 (2000) 441-452
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 441-452
-
-
van Hoof, A.1
Lennertz, P.2
Parker, R.3
-
41
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
Vanacova S., Wolf J., Martin G., Blank D., Dettwiler S., Friedlein A., Langen H., Keith G., and Keller W. A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol. 3 (2005) e189
-
(2005)
PLoS Biol.
, vol.3
-
-
Vanacova, S.1
Wolf, J.2
Martin, G.3
Blank, D.4
Dettwiler, S.5
Friedlein, A.6
Langen, H.7
Keith, G.8
Keller, W.9
-
42
-
-
0035861864
-
Functional link between the mammalian exosome and mRNA decapping
-
Wang Z., and Kiledjian M. Functional link between the mammalian exosome and mRNA decapping. Cell 107 (2001) 751-762
-
(2001)
Cell
, vol.107
, pp. 751-762
-
-
Wang, Z.1
Kiledjian, M.2
-
43
-
-
4444324795
-
Bringing the role of mRNA decay in the control of gene expression into focus
-
Wilusz C.J., and Wilusz J. Bringing the role of mRNA decay in the control of gene expression into focus. Trends Genet. 20 (2004) 491-497
-
(2004)
Trends Genet.
, vol.20
, pp. 491-497
-
-
Wilusz, C.J.1
Wilusz, J.2
-
44
-
-
20444368036
-
Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
Wyers F., Rougemaille M., Badis G., Roussell J., Doufour M., Boulay J., Regnault B., Devaux F., Namane A., Seraphin B., et al. Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 121 (2005) 725-737
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
Roussell, J.4
Doufour, M.5
Boulay, J.6
Regnault, B.7
Devaux, F.8
Namane, A.9
Seraphin, B.10
|