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Volumn 91, Issue 4, 1997, Pages 457-466

The exosome: A conserved eukaryotic RNA processing complex containing multiple 3'→5' exoribonucleases

Author keywords

[No Author keywords available]

Indexed keywords

EXORIBONUCLEASE; FUNGAL RNA;

EID: 0030702085     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)80432-8     Document Type: Article
Times cited : (783)

References (48)
  • 2
    • 0026579730 scopus 로고
    • Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA
    • Beltrame, M., and Tollervey, D. (1992). Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. EMBO J. 11, 1531-1542.
    • (1992) EMBO J. , vol.11 , pp. 1531-1542
    • Beltrame, M.1    Tollervey, D.2
  • 3
    • 0030070804 scopus 로고    scopus 로고
    • The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity
    • Boeck, R., Tarun, S., Jr., Rieger, M., Deardorff, J.A., Müller-Auer, S., and Sachs, A.B. (1996). The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity. J. Biol. Chem. 271, 432-438.
    • (1996) J. Biol. Chem. , vol.271 , pp. 432-438
    • Boeck, R.1    Tarun S., Jr.2    Rieger, M.3    Deardorff, J.A.4    Müller-Auer, S.5    Sachs, A.B.6
  • 4
    • 0029811599 scopus 로고    scopus 로고
    • PANS encodes a subunit of the Pab1p-dependent poly(A) nuclease in Saccharomyces cerevisiae
    • Brown, C.E., Tarun, S.Z., Jr., Boeck, R., and Sachs, A.B. (1996). PANS encodes a subunit of the Pab1p-dependent poly(A) nuclease in Saccharomyces cerevisiae. Mol. Cell. Biol. 16, 5744-5753.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 5744-5753
    • Brown, C.E.1    Tarun, S.Z.2    Boeck, R.3    Sachs, A.B.4
  • 5
    • 0028269435 scopus 로고
    • Copurification of E. coli RNAase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis, A.J., Van Houwe, G., Ehretsmann, C., and Krisch, H.M. (1994). Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation. Cell 76, 889-900.
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 6
    • 0025617209 scopus 로고
    • Ribonucleases, tRNA nucleotidyltransferase, and the 3′ processing of tRNA
    • Deutscher, M.P. (1990). Ribonucleases, tRNA nucleotidyltransferase, and the 3′ processing of tRNA. Prog. Nucl. Acids. Mol. Biol. 39, 209-240.
    • (1990) Prog. Nucl. Acids. Mol. Biol. , vol.39 , pp. 209-240
    • Deutscher, M.P.1
  • 7
    • 0027220698 scopus 로고
    • Promiscuous exoribonucleases of Escherichia coli
    • Deutscher, M.P. (1993). Promiscuous exoribonucleases of Escherichia coli. J. Bacteriol. 175, 4577-4583.
    • (1993) J. Bacteriol. , vol.175 , pp. 4577-4583
    • Deutscher, M.P.1
  • 8
    • 0026334860 scopus 로고
    • Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis
    • Deutscher, M.P., and Reuven, N.B. (1991). Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis. Proc. Natl. Acad. Sci. USA 88, 3277-3280.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 3277-3280
    • Deutscher, M.P.1    Reuven, N.B.2
  • 9
  • 10
    • 0029089849 scopus 로고
    • The novel nuclear gene DSS-1 of Saccharomyces cerevisiae is necessary for mitochondrial biogenesis
    • Dmochowska, A., Golik, P., and Stepien, P.P. (1995). The novel nuclear gene DSS-1 of Saccharomyces cerevisiae is necessary for mitochondrial biogenesis. Curr. Genet. 28, 108-112.
    • (1995) Curr. Genet. , vol.28 , pp. 108-112
    • Dmochowska, A.1    Golik, P.2    Stepien, P.P.3
  • 11
    • 0003395950 scopus 로고
    • Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12
    • Donovan, W.P., and Kushner, S.R. (1986). Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc. Natl. Acad. Sci. USA 83, 120-124.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 120-124
    • Donovan, W.P.1    Kushner, S.R.2
  • 12
    • 0020409975 scopus 로고
    • Saccharomyces cerevisiae contains a complex multiGene family related to the major heat shock inducible gene of Drosophila
    • Ingolia, T.D., Slater, M.R., and Craig, E.A. (1982). Saccharomyces cerevisiae contains a complex multiGene family related to the major heat shock inducible gene of Drosophila. Mol. Cell. Biol. 2, 1388-1398.
    • (1982) Mol. Cell. Biol. , vol.2 , pp. 1388-1398
    • Ingolia, T.D.1    Slater, M.R.2    Craig, E.A.3
  • 13
    • 0017567052 scopus 로고
    • Exoribonucleases in wild type Escherichia coli and RNase II-deficient mutants
    • Kasai, T., Gupta, R.S., and Schlessinger, D. (1977). Exoribonucleases in wild type Escherichia coli and RNase II-deficient mutants. J. Biol. Chem. 252, 8950-8956.
    • (1977) J. Biol. Chem. , vol.252 , pp. 8950-8956
    • Kasai, T.1    Gupta, R.S.2    Schlessinger, D.3
  • 14
    • 0026806544 scopus 로고
    • Characterization of Escherichia coli RNase PH
    • Kelly, K.O., and Deutscher, M.P. (1992). Characterization of Escherichia coli RNase PH. J. Biol. Chem. 267, 17153-17158.
    • (1992) J. Biol. Chem. , vol.267 , pp. 17153-17158
    • Kelly, K.O.1    Deutscher, M.P.2
  • 15
    • 0028181441 scopus 로고
    • Hidden Markov Models in computational biology: Applications to protein modeling
    • Krogh, A., Brown, M., Mian, S., Sjölander, K., and Haussler, D. (1994). Hidden Markov Models in computational biology: applications to protein modeling. J. Mol. Biol. 235, 1501-1531.
    • (1994) J. Mol. Biol. , vol.235 , pp. 1501-1531
    • Krogh, A.1    Brown, M.2    Mian, S.3    Sjölander, K.4    Haussler, D.5
  • 16
    • 0029814312 scopus 로고    scopus 로고
    • One-step PCR mediated strategy for the construction of conditionally expressed and epitope tagged yeast proteins
    • Lafontaine, D., and Tollervey, D. (1996). One-step PCR mediated strategy for the construction of conditionally expressed and epitope tagged yeast proteins. Nucl. Acids Res. 24, 3469-3472.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 3469-3472
    • Lafontaine, D.1    Tollervey, D.2
  • 17
    • 0030008174 scopus 로고    scopus 로고
    • Identification of an RNA-dependent ATPase activity in mammalian U5 snRNPs
    • Laggerbauer, B., Lauber, J., and Lührmann, R. (1996). Identification of an RNA-dependent ATPase activity in mammalian U5 snRNPs. Nucl. Acids Res. 24, 868-875.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 868-875
    • Laggerbauer, B.1    Lauber, J.2    Lührmann, R.3
  • 18
    • 0029760875 scopus 로고    scopus 로고
    • A DEAD-box-family protein is required for nucleocytoplasmic transport of yeast mRNA
    • Laing, S., Hitomi, M., Hu, Y.-H., Liu, Y., and Tartakoff, A.M. (1996). A DEAD-box-family protein is required for nucleocytoplasmic transport of yeast mRNA. Mol. Cell Biol. 16, 5139-5146.
    • (1996) Mol. Cell Biol. , vol.16 , pp. 5139-5146
    • Laing, S.1    Hitomi, M.2    Hu, Y.-H.3    Liu, Y.4    Tartakoff, A.M.5
  • 19
    • 0023895357 scopus 로고
    • A small-scale procedure for preparation of nuclear extracts that support efficient transcription and pre-mRNA splicing
    • Lee, K.A.W., Bindereif, A., and Green, M.R. (1988). A small-scale procedure for preparation of nuclear extracts that support efficient transcription and pre-mRNA splicing. Gene Anal. Techn. 5, 22-31.
    • (1988) Gene Anal. Techn. , vol.5 , pp. 22-31
    • Lee, K.A.W.1    Bindereif, A.2    Green, M.R.3
  • 20
    • 0028100687 scopus 로고
    • The role of individual exoribo-nucleases in processing at the 3′ end of Escherichia coli tRNA precursors
    • Li, Z., and Deutscher, M.P. (1994). The role of individual exoribo-nucleases in processing at the 3′ end of Escherichia coli tRNA precursors. J. Biol. Chem. 269, 6064-6071.
    • (1994) J. Biol. Chem. , vol.269 , pp. 6064-6071
    • Li, Z.1    Deutscher, M.P.2
  • 21
    • 0029151159 scopus 로고
    • The tRNA processing enzyme RNase T is essential for maturation of 5s RNA
    • Li, Z., and Deutscher, M. (1995). The tRNA processing enzyme RNase T is essential for maturation of 5S RNA. Proc. Natl. Acad. Sci. USA 92, 6883-6886.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 6883-6886
    • Li, Z.1    Deutscher, M.2
  • 22
    • 0030576503 scopus 로고    scopus 로고
    • Maturation pathways for E. coli tRNA precursors: A random multienzyme process in vivo
    • Li, Z., and Deutscher, M.P. (1996). Maturation pathways for E. coli tRNA precursors: a random multienzyme process in vivo. Cell 86, 503-512.
    • (1996) Cell , vol.86 , pp. 503-512
    • Li, Z.1    Deutscher, M.P.2
  • 23
    • 0030021182 scopus 로고    scopus 로고
    • Escherichia coli RNase T functions in vivo as a dimer dependent on cysteine 168
    • Li, Z., Zhan, L., and Deutscher, M.P. (1996). Escherichia coli RNase T functions in vivo as a dimer dependent on cysteine 168. J. Biol. Chem. 271, 1133-1137.
    • (1996) J. Biol. Chem. , vol.271 , pp. 1133-1137
    • Li, Z.1    Zhan, L.2    Deutscher, M.P.3
  • 24
    • 0028575316 scopus 로고
    • Error tolerant identification of peptides in sequence databases by peptide sequence tags
    • Mann, M., and Wilm, M.S. (1994). Error tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem. 66, 4390-4399.
    • (1994) Anal. Chem. , vol.66 , pp. 4390-4399
    • Mann, M.1    Wilm, M.S.2
  • 25
    • 0030034498 scopus 로고    scopus 로고
    • The DExH box protein SuvSp is a component of a yeast mitochondrial 3′-to-5′ exoribonuclease that suppresses group I intron toxicity
    • Margossian, S.P., Li, H., Zassenhaus, H.P., and Butow, R.A. (1996). The DExH box protein SuvSp is a component of a yeast mitochondrial 3′-to-5′ exoribonuclease that suppresses group I intron toxicity. Cell 84, 199-209.
    • (1996) Cell , vol.84 , pp. 199-209
    • Margossian, S.P.1    Li, H.2    Zassenhaus, H.P.3    Butow, R.A.4
  • 26
    • 73049130725 scopus 로고
    • A method for determining the sedimentation behavior of enzymes: Application to protein mixtures
    • Martin, R.G., and Ames, B.N. (1961). A method for determining the sedimentation behavior of enzymes: application to protein mixtures. J. Biol. Chem. 236, 1372-1379.
    • (1961) J. Biol. Chem. , vol.236 , pp. 1372-1379
    • Martin, R.G.1    Ames, B.N.2
  • 28
    • 0030836805 scopus 로고    scopus 로고
    • Comparative sequence analysis of ribonucleases HII, III, II, PH, and D
    • Mian, S. (1997). Comparative sequence analysis of ribonucleases HII, III, II, PH, and D. Nucl. Acids Res. 25, 3187-3195.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 3187-3195
    • Mian, S.1
  • 29
    • 0029976430 scopus 로고    scopus 로고
    • Proteins associated with RNase E in a multicomponent ribonucleolytic complex
    • Miczak, A., Kaberdin, V.R., Wei, C.-L., and Lin-Chao, S. (1996). Proteins associated with RNase E in a multicomponent ribonucleolytic complex. Proc. Natl. Acad. Sci. USA 93, 3865-3869.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 3865-3869
    • Miczak, A.1    Kaberdin, V.R.2    Wei, C.-L.3    Lin-Chao, S.4
  • 30
    • 0027512243 scopus 로고
    • Isolation and characterization of an NTP-dependent 3′-exoribonuclease from mitochondria of Saccharomyces cerevisiae
    • Min, J., Heuertz, R.M., and Zassenhaus, H.P. (1993). Isolation and characterization of an NTP-dependent 3′-exoribonuclease from mitochondria of Saccharomyces cerevisiae. J. Biol. Chem. 268, 7350-7357.
    • (1993) J. Biol. Chem. , vol.268 , pp. 7350-7357
    • Min, J.1    Heuertz, R.M.2    Zassenhaus, H.P.3
  • 31
    • 0029939247 scopus 로고    scopus 로고
    • The 3′ end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism
    • Mitchell, P., Petfalski, E., and Tollervey, D. (1996). The 3′ end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism. Genes Dev. 10, 502-513.
    • (1996) Genes Dev. , vol.10 , pp. 502-513
    • Mitchell, P.1    Petfalski, E.2    Tollervey, D.3
  • 32
    • 0023931883 scopus 로고
    • Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250
    • Neuhoff, V., Arold, N., Taube, D., and Ehrhardt, W. (1988). Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 9, 255-262.
    • (1988) Electrophoresis , vol.9 , pp. 255-262
    • Neuhoff, V.1    Arold, N.2    Taube, D.3    Ehrhardt, W.4
  • 34
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R., and Lipman, D.J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 35
    • 0029922992 scopus 로고    scopus 로고
    • A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
    • Py, B., Higgins, C.F., Krisch, H.M., and Carpousis, A.J. (1996). A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381, 169-172.
    • (1996) Nature , vol.381 , pp. 169-172
    • Py, B.1    Higgins, C.F.2    Krisch, H.M.3    Carpousis, A.J.4
  • 36
    • 0021262150 scopus 로고
    • Superkiller mutations in Saccharomyces cerevisiae suppress exclusion of M2 double-stranded RNA by L-A-HN and confer cold sensitivity in the presence of M and L-A-HN
    • Ridley, S.P., Sommer, S.S., and Wickner, R.B. (1984). Superkiller mutations in Saccharomyces cerevisiae suppress exclusion of M2 double-stranded RNA by L-A-HN and confer cold sensitivity in the presence of M and L-A-HN. Mol. Cell. Biol. 4, 761-770.
    • (1984) Mol. Cell. Biol. , vol.4 , pp. 761-770
    • Ridley, S.P.1    Sommer, S.S.2    Wickner, R.B.3
  • 37
    • 0026800718 scopus 로고
    • Translation initiation requires the PAB-dependent Poly(A) ribonuclease in yeast
    • Sachs, A.B., and Deardorff, J.A. (1992).Translation initiation requires the PAB-dependent Poly(A) ribonuclease in yeast. Cell 70, 961-973.
    • (1992) Cell , vol.70 , pp. 961-973
    • Sachs, A.B.1    Deardorff, J.A.2
  • 38
    • 0029927505 scopus 로고    scopus 로고
    • Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels
    • Shevchenko, A., Wilm, M., Vorm, O., and Mann, M. (1996). Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels. Anal. Chem. 68, 850-858.
    • (1996) Anal. Chem. , vol.68 , pp. 850-858
    • Shevchenko, A.1    Wilm, M.2    Vorm, O.3    Mann, M.4
  • 39
    • 0014007813 scopus 로고
    • Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases
    • Siegel, L.M., and Monty, K.J. (1966). Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases. Biochim. Biophys. Acta 112, 346-362.
    • (1966) Biochim. Biophys. Acta , vol.112 , pp. 346-362
    • Siegel, L.M.1    Monty, K.J.2
  • 40
    • 0023806075 scopus 로고
    • Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transfease
    • Smith, D.B., and Johnson, K.S. (1988). Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transfease. Gene 67, 31-40.
    • (1988) Gene , vol.67 , pp. 31-40
    • Smith, D.B.1    Johnson, K.S.2
  • 41
    • 0025520334 scopus 로고
    • The complete sequence of the 8.2 kb segment left of MAT on chromosome III reveals five ORFs, including a gene for a yeast ribokinase
    • Thierry, A., Fairhead, C., and Dujon, B. (1990). The complete sequence of the 8.2 kb segment left of MAT on chromosome III reveals five ORFs, including a gene for a yeast ribokinase. Yeast 6, 521-534.
    • (1990) Yeast , vol.6 , pp. 521-534
    • Thierry, A.1    Fairhead, C.2    Dujon, B.3
  • 42
    • 0026688006 scopus 로고
    • vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri
    • Tobe, T., Sasakawa, C., Okada, N., Honma, Y., and Yoshikawa, M. (1992). vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri. J. Bacteriol. 174, 6359-6367.
    • (1992) J. Bacteriol. , vol.174 , pp. 6359-6367
    • Tobe, T.1    Sasakawa, C.2    Okada, N.3    Honma, Y.4    Yoshikawa, M.5
  • 43
    • 0023661309 scopus 로고
    • A yeast small nuclear RNA is required for normal processing of pre-rRNA
    • Tollervey, D. (1987). A yeast small nuclear RNA is required for normal processing of pre-rRNA. EMBO J. 6, 4169-4175.
    • (1987) EMBO J. , vol.6 , pp. 4169-4175
    • Tollervey, D.1
  • 45
    • 0027215228 scopus 로고
    • Evidence that the SKI antiviral system of Saccharomyces cerevisiae acts by blocking expression of viral mRNA
    • Widner, W.R., and Wickner, R.B. (1993). Evidence that the SKI antiviral system of Saccharomyces cerevisiae acts by blocking expression of viral mRNA. Mol. Cell Biol. 13, 4331-4341.
    • (1993) Mol. Cell Biol. , vol.13 , pp. 4331-4341
    • Widner, W.R.1    Wickner, R.B.2
  • 46
    • 0030033198 scopus 로고    scopus 로고
    • Parent ion scans of unseparated peptide mixtures
    • Wilm, M., Neubauer, G., and Mann, M. (1996). Parent ion scans of unseparated peptide mixtures. Anal. Chem. 68, 527-533.
    • (1996) Anal. Chem. , vol.68 , pp. 527-533
    • Wilm, M.1    Neubauer, G.2    Mann, M.3
  • 47
    • 0030026070 scopus 로고    scopus 로고
    • Femtomole sequencing of proteins from polyacrylamidegels by nano-electrospray mass spectrometry
    • Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S., Schweigerer, L., Fotis, T., and Mann, M. (1996). Femtomole sequencing of proteins from polyacrylamidegels by nano-electrospray mass spectrometry. Nature 379, 466-469.
    • (1996) Nature , vol.379 , pp. 466-469
    • Wilm, M.1    Shevchenko, A.2    Houthaeve, T.3    Breit, S.4    Schweigerer, L.5    Fotis, T.6    Mann, M.7
  • 48
    • 0030860690 scopus 로고    scopus 로고
    • An essential function for the phosphate-dependent exoribonucleases RNase PH and polynucleotide phosphorylase
    • Zhou, Z., and Deutscher, M. (1997). An essential function for the phosphate-dependent exoribonucleases RNase PH and polynucleotide phosphorylase. J. Bacteriol. 179, 4391-4395.
    • (1997) J. Bacteriol. , vol.179 , pp. 4391-4395
    • Zhou, Z.1    Deutscher, M.2


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