-
1
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′→5′ exoribonucleases
-
Mitchell, P., Petfalski, E., Shevchenko, A., Mann, M. & Tollervey, D. The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′→5′ exoribonucleases. Cell 91, 457-466 (1997).
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
2
-
-
0033567131
-
The yeast exosome and human PM-Scl are related complexes of 3′ → 5′ exonucleases
-
Allmang, C. et al. The yeast exosome and human PM-Scl are related complexes of 3′ → 5′ exonucleases. Genes Dev. 13, 2148-2158 (1999).
-
(1999)
Genes Dev
, vol.13
, pp. 2148-2158
-
-
Allmang, C.1
-
3
-
-
0034745504
-
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
-
Koonin, E.V., Wolf, Y.I. & Aravind, L. Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res. 11, 240-252 (2001).
-
(2001)
Genome Res
, vol.11
, pp. 240-252
-
-
Koonin, E.V.1
Wolf, Y.I.2
Aravind, L.3
-
4
-
-
27644496002
-
Structural basis of 3′ end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core
-
Lorentzen, E. & Conti, E. Structural basis of 3′ end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core. Mol. Cell 20, 473-481 (2005).
-
(2005)
Mol. Cell
, vol.20
, pp. 473-481
-
-
Lorentzen, E.1
Conti, E.2
-
5
-
-
27644435644
-
Structural framework for the mechanism of archaeal exosomes in RNA processing
-
Buttner, K., Wenig, K. & Hopfner, K.P. Structural framework for the mechanism of archaeal exosomes in RNA processing. Mol. Cell 20, 461-471 (2005).
-
(2005)
Mol. Cell
, vol.20
, pp. 461-471
-
-
Buttner, K.1
Wenig, K.2
Hopfner, K.P.3
-
6
-
-
0034435974
-
A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation
-
Symmons, M.F., Jones, G.H. & Luisi, B.F. A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation. Structure 8, 1215-1226 (2000).
-
(2000)
Structure
, vol.8
, pp. 1215-1226
-
-
Symmons, M.F.1
Jones, G.H.2
Luisi, B.F.3
-
7
-
-
33744816815
-
Subunit architecture of multimeric complexes isolated directly from cells
-
605-610
-
Hernandez, H., Dziembowski, A., Taverner, T., Seraphin, B. & Robinson, C.V. Subunit architecture of multimeric complexes isolated directly from cells. EMBO Rep. 7, 605-610 (2006).
-
(2006)
EMBO Rep
, vol.7
-
-
Hernandez, H.1
Dziembowski, A.2
Taverner, T.3
Seraphin, B.4
Robinson, C.V.5
-
8
-
-
22144493835
-
The archaeal exosome core is a hexameric ring structure with three catalytic subunits
-
Lorentzen, E. et al. The archaeal exosome core is a hexameric ring structure with three catalytic subunits. Nat. Struct. Mol. Biol. 12, 575-581 (2005).
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 575-581
-
-
Lorentzen, E.1
-
9
-
-
0036799218
-
Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome
-
Oliveira, C.C., Gonzales, F.A. & Zanchin, N.I. Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome. Nucleic Acids Res. 30, 4186-4198 (2002).
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4186-4198
-
-
Oliveira, C.C.1
Gonzales, F.A.2
Zanchin, N.I.3
-
10
-
-
3543111496
-
A protein interaction framework for human mRNA degradation
-
Lehner, B. & Sanderson, C.M. A protein interaction framework for human mRNA degradation. Genome Res. 14, 1315-1323 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1315-1323
-
-
Lehner, B.1
Sanderson, C.M.2
-
11
-
-
0042317221
-
The roles of intersubunit interactions in exosome stability
-
Estevez, A.M., Lehner, B., Sanderson, C.M., Ruppert, T. & Clayton, C. The roles of intersubunit interactions in exosome stability. J. Biol. Chem. 278, 34943-34951 (2003).
-
(2003)
J. Biol. Chem
, vol.278
, pp. 34943-34951
-
-
Estevez, A.M.1
Lehner, B.2
Sanderson, C.M.3
Ruppert, T.4
Clayton, C.5
-
12
-
-
0036308794
-
Protein-protein interactions of hCsl4p with other human exosome subunits
-
Raijmakers, R., Noordman, Y.E., van Venrooij, W.J. & Pruijn, G.J. Protein-protein interactions of hCsl4p with other human exosome subunits. J. Mol. Biol. 315, 809-818 (2002).
-
(2002)
J. Mol. Biol
, vol.315
, pp. 809-818
-
-
Raijmakers, R.1
Noordman, Y.E.2
van Venrooij, W.J.3
Pruijn, G.J.4
-
13
-
-
0036469214
-
The yin and yang of the exosome
-
Butler, J.S. The yin and yang of the exosome. Trends Cell Biol. 12, 90-96 (2002).
-
(2002)
Trends Cell Biol
, vol.12
, pp. 90-96
-
-
Butler, J.S.1
-
14
-
-
0032557455
-
Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′ end formation
-
Briggs, M.W., Burkard, K.T. & Butler, J.S. Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′ end formation. J. Biol. Chem. 273, 13255-13263 (1998).
-
(1998)
J. Biol. Chem
, vol.273
, pp. 13255-13263
-
-
Briggs, M.W.1
Burkard, K.T.2
Butler, J.S.3
-
15
-
-
2642574393
-
Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae
-
Kadaba, S. et al. Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. Genes Dev. 18, 1227-1240 (2004).
-
(2004)
Genes Dev
, vol.18
, pp. 1227-1240
-
-
Kadaba, S.1
-
16
-
-
20444368036
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
Wyers, F. et al. Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 121, 725-737 (2005).
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
-
17
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
Vanacova, S. et al. A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol. 3, e189 (2005).
-
(2005)
PLoS Biol
, vol.3
-
-
Vanacova, S.1
-
18
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
LaCava, J. et al. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121, 713-724 (2005).
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
LaCava, J.1
-
19
-
-
0141669145
-
Rrp47p is an exosome-associated protein required for the 3′ processing of stable RNAs
-
Mitchell, P. et al. Rrp47p is an exosome-associated protein required for the 3′ processing of stable RNAs. Mol. Cell. Biol. 23, 6982-6992 (2003).
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 6982-6992
-
-
Mitchell, P.1
-
20
-
-
0033777266
-
Function of the ski4p (Csl4p) and Ski7p proteins in 3′-to-5′ degradation of mRNA
-
van Hoof, A., Staples, R.R., Baker, R.E. & Parker, R. Function of the ski4p (Csl4p) and Ski7p proteins in 3′-to-5′ degradation of mRNA. Mol. Cell. Biol. 20, 8230-8243 (2000).
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 8230-8243
-
-
van Hoof, A.1
Staples, R.R.2
Baker, R.E.3
Parker, R.4
-
21
-
-
0041524062
-
Interaction between Ski7p and Upf1p is required for nonsense-mediated 3′-to-5′ mRNA decay in yeast
-
Takahashi, S., Araki, Y., Sakuno, T. & Katada, T. Interaction between Ski7p and Upf1p is required for nonsense-mediated 3′-to-5′ mRNA decay in yeast. EMBO J. 22, 3951-3959 (2003).
-
(2003)
EMBO J
, vol.22
, pp. 3951-3959
-
-
Takahashi, S.1
Araki, Y.2
Sakuno, T.3
Katada, T.4
-
22
-
-
0028007315
-
The processive reaction mechanism of ribonuclease II
-
Cannistraro, V.J. & Kennell, D. The processive reaction mechanism of ribonuclease II. J. Mol. Biol. 243, 930-943 (1994).
-
(1994)
J. Mol. Biol
, vol.243
, pp. 930-943
-
-
Cannistraro, V.J.1
Kennell, D.2
-
23
-
-
0033214175
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
-
Allmang, C. et al. Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J. 18, 5399-5410 (1999).
-
(1999)
EMBO J
, vol.18
, pp. 5399-5410
-
-
Allmang, C.1
-
24
-
-
0034655640
-
Degradation of ribosomal RNA precursors by the exosome
-
Allmang, C., Mitchell, P., Petfalski, E. & Tollervey, D. Degradation of ribosomal RNA precursors by the exosome. Nucleic Acids Res. 28, 1684-1691 (2000).
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1684-1691
-
-
Allmang, C.1
Mitchell, P.2
Petfalski, E.3
Tollervey, D.4
-
25
-
-
0035801392
-
Ski7p G protein interacts with the exosome and the Ski complex for 3′-to-5′ mRNA decay in yeast
-
Araki, Y. et al. Ski7p G protein interacts with the exosome and the Ski complex for 3′-to-5′ mRNA decay in yeast. EMBO J. 20, 4684-4693 (2001).
-
(2001)
EMBO J
, vol.20
, pp. 4684-4693
-
-
Araki, Y.1
-
26
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
Chen, C.Y. et al. AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107, 451-464 (2001).
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.Y.1
-
27
-
-
33645727798
-
Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae
-
Dez, C., Houseley, J. & Tollervey, D. Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae. EMBO J. 25, 1534-1546 (2006).
-
(2006)
EMBO J
, vol.25
, pp. 1534-1546
-
-
Dez, C.1
Houseley, J.2
Tollervey, D.3
-
28
-
-
0344442427
-
A role for the exosome in the in vivo degradation of unstable mRNAs
-
Haile, S., Estevez, A.M. & Clayton, C. A role for the exosome in the in vivo degradation of unstable mRNAs. RNA 9, 1491-1501 (2003).
-
(2003)
RNA
, vol.9
, pp. 1491-1501
-
-
Haile, S.1
Estevez, A.M.2
Clayton, C.3
-
29
-
-
0037762554
-
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3′→5′ degradation
-
Mitchell, P. & Tollervey, D. An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3′→5′ degradation. Mol. Cell 11, 1405-1413 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 1405-1413
-
-
Mitchell, P.1
Tollervey, D.2
-
31
-
-
0000577868
-
The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex
-
Anderson, J.S. & Parker, R.P. The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J. 17, 1497-1506 (1998).
-
(1998)
EMBO J
, vol.17
, pp. 1497-1506
-
-
Anderson, J.S.1
Parker, R.P.2
-
32
-
-
12544252211
-
A single mutation in Escherichia coli ribonuclease II inactivates the enzyme without affecting RNA binding
-
Amblar, M. & Arraiano, C.M. A single mutation in Escherichia coli ribonuclease II inactivates the enzyme without affecting RNA binding. FEBS J. 272, 363-374 (2005).
-
(2005)
FEBS J
, vol.272
, pp. 363-374
-
-
Amblar, M.1
Arraiano, C.M.2
-
33
-
-
0032940545
-
Analysis of mutations in the yeast mRNA decapping enzyme
-
Tharun, S. & Parker, R. Analysis of mutations in the yeast mRNA decapping enzyme. Genetics 151, 1273-1285 (1999).
-
(1999)
Genetics
, vol.151
, pp. 1273-1285
-
-
Tharun, S.1
Parker, R.2
-
34
-
-
0028202495
-
Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript
-
Muhlrad, D., Decker, C.J. & Parker, R. Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript. Genes Dev. 8, 855-866 (1994).
-
(1994)
Genes Dev
, vol.8
, pp. 855-866
-
-
Muhlrad, D.1
Decker, C.J.2
Parker, R.3
-
35
-
-
0036464532
-
Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3′→5′ exonuclease containing S1 and KH RNA-binding domains
-
Chekanova, J.A., Dutko, J.A., Mian, I.S. & Belostotsky, D.A. Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3′→5′ exonuclease containing S1 and KH RNA-binding domains. Nucleic Acids Res. 30, 695-700 (2002).
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 695-700
-
-
Chekanova, J.A.1
Dutko, J.A.2
Mian, I.S.3
Belostotsky, D.A.4
-
36
-
-
0035898660
-
The exosome of Trypanosoma brucei
-
Estevez, A.M., Kempf, T. & Clayton, C. The exosome of Trypanosoma brucei. EMBO J. 20, 3831-3839 (2001).
-
(2001)
EMBO J
, vol.20
, pp. 3831-3839
-
-
Estevez, A.M.1
Kempf, T.2
Clayton, C.3
-
37
-
-
0034693061
-
Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells
-
Chekanova, J.A., Shaw, R.J., Wills, M.A. & Belostotsky, D.A. Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells. J. Biol. Chem. 275, 33158-33166 (2000).
-
(2000)
J. Biol. Chem
, vol.275
, pp. 33158-33166
-
-
Chekanova, J.A.1
Shaw, R.J.2
Wills, M.A.3
Belostotsky, D.A.4
-
38
-
-
0037077311
-
Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II
-
Cheng, Z.F. & Deutscher, M.P. Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II. J. Biol. Chem. 277, 21624-21629 (2002).
-
(2002)
J. Biol. Chem
, vol.277
, pp. 21624-21629
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
39
-
-
77956904839
-
Polynucleotide phosphorylase
-
3rd edn, ed. Boyer, P.D, Academic Press, New York
-
Godefroy-Colburn, T. & Grunberg-Manago, M. Polynucleotide phosphorylase. in The Enzymes 3rd edn. (ed. Boyer, P.D.) 533-574 (Academic Press, New York, 1972).
-
(1972)
The Enzymes
, pp. 533-574
-
-
Godefroy-Colburn, T.1
Grunberg-Manago, M.2
-
40
-
-
0037675801
-
Identification of multiple RNA features that influence CCR4 deadenylation activity
-
Viswanathan, P., Chen, J., Chiang, Y.C. & Denis, C.L. Identification of multiple RNA features that influence CCR4 deadenylation activity. J. Biol. Chem. 278, 14949-14955 (2003).
-
(2003)
J. Biol. Chem
, vol.278
, pp. 14949-14955
-
-
Viswanathan, P.1
Chen, J.2
Chiang, Y.C.3
Denis, C.L.4
-
41
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut, G. et al. A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17, 1030-1032 (1999).
-
(1999)
Nat. Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
-
42
-
-
0032481316
-
Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′ end formation of 5.8S rRNA in Saccharomyces cerevisiae
-
de la Cruz, J., Kressler, D., Tollervey, D. & Linder, P. Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′ end formation of 5.8S rRNA in Saccharomyces cerevisiae. EMBO J. 17, 1128-1140 (1998).
-
(1998)
EMBO J
, vol.17
, pp. 1128-1140
-
-
de la Cruz, J.1
Kressler, D.2
Tollervey, D.3
Linder, P.4
-
43
-
-
0035875115
-
The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation
-
Daugeron, M.C., Mauxion, F. & Seraphin, B. The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation. Nucleic Acids Res. 29, 2448-2455 (2001).
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2448-2455
-
-
Daugeron, M.C.1
Mauxion, F.2
Seraphin, B.3
|