-
1
-
-
0019826665
-
Establishment in culture of pluripotential cells from mouse embryos
-
DOI 10.1038/292154a0
-
Evans MJ, Kaufman MH. Establishment in culture of pluripotential cells from mouse embryos. Nature 292(5819), 154-156 (1981). (Pubitemid 11050741)
-
(1981)
Nature
, vol.292
, Issue.5819
, pp. 154-156
-
-
Evans, M.J.1
Kaufman, M.H.2
-
2
-
-
0032491416
-
Embryonic stem cell lines derived from human blastocysts
-
Thomson JA, Itskovitz-Eldor J, Shapiro SS et al. Embryonic stem cell lines derived from human blastocysts. Science 282(5391), 1145-1147 (1998). (Pubitemid 28516247)
-
(1998)
Science
, vol.282
, Issue.5391
, pp. 1145-1147
-
-
Thomson, J.A.1
-
3
-
-
0034101804
-
Embryonic stem cell lines from human blastocysts: Somatic differentiation in vitro
-
DOI 10.1038/74447
-
Reubinoff BE, Pera MF, Fong CY, Trounson A, Bongso A. Embryonic stem cell lines from human blastocysts: Somatic differentiation in vitro. Nat. Biotechnol. 18(4), 399-404 (2000). (Pubitemid 30217526)
-
(2000)
Nature Biotechnology
, vol.18
, Issue.4
, pp. 399-404
-
-
Reubinoff, B.E.1
Pera, M.F.2
Fong, C.-Y.3
Trounson, A.4
Bongso, A.5
-
4
-
-
70349604814
-
Emerging ethical, legal and social issues associated with stem cell research & and the current role of the moral status of the embryo
-
Zarzeczny A, Caulfield T. Emerging ethical, legal and social issues associated with stem cell research & and the current role of the moral status of the embryo. Stem Cell Rev. 5(2), 96-101 (2009).
-
(2009)
Stem Cell Rev
, vol.5
, Issue.2
, pp. 96-101
-
-
Zarzeczny, A.1
Caulfield, T.2
-
5
-
-
74949087802
-
The bioethics of stem cell research and therapy
-
Hyun I. The bioethics of stem cell research and therapy. J. Clin. Invest. 120(1), 71-75 (2010).
-
(2010)
J. Clin. Invest.
, vol.120
, Issue.1
, pp. 71-75
-
-
Hyun, I.1
-
6
-
-
0014351957
-
Changes in somatic cell nuclei inserted into growing and maturing amphibian oocytes
-
Gurdon JB. Changes in somatic cell nuclei inserted into growing and maturing amphibian oocytes. J. Embryol. Exp. Morphol. 20(3), 401-414 (1968).
-
(1968)
J. Embryol. Exp. Morphol.
, vol.20
, Issue.3
, pp. 401-414
-
-
Gurdon, J.B.1
-
7
-
-
0022653382
-
Nuclear transplantation in sheep embryos
-
Willadsen SM. Nuclear transplantation in sheep embryos. Nature 320(6057), 63-65 (1986). (Pubitemid 16105246)
-
(1986)
Nature
, vol.320
, Issue.6057
, pp. 63-65
-
-
Willadsen, S.M.1
-
8
-
-
0037057695
-
Somatic cell nuclear transfer
-
Wilmut I, Beaujean N, de Sousa PA et al. Somatic cell nuclear transfer. Nature 419(6907), 583-586 (2002).
-
(2002)
Nature
, vol.419
, Issue.6907
, pp. 583-586
-
-
Wilmut, I.1
Beaujean, N.2
De Sousa, P.A.3
-
9
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
DOI 10.1016/j.cell.2006.07.024, PII S0092867406009767
-
Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126(4), 663-676 (2006). (Pubitemid 44233629)
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
10
-
-
36248966518
-
Induction of pluripotent stem cells from adult human fibroblasts by defined factors
-
DOI 10.1016/j.cell.2007.11.019, PII S0092867407014717
-
Takahashi K, Tanabe K, Ohnuki M et al. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131(5), 861-872 (2007). (Pubitemid 350138099)
-
(2007)
Cell
, vol.131
, Issue.5
, pp. 861-872
-
-
Takahashi, K.1
Tanabe, K.2
Ohnuki, M.3
Narita, M.4
Ichisaka, T.5
Tomoda, K.6
Yamanaka, S.7
-
11
-
-
36749043230
-
Induced pluripotent stem cell lines derived from human somatic cells
-
Yu J, Vodyanik MA, Smuga-Otto K et al. Induced pluripotent stem cell lines derived from human somatic cells. Science 318(5858), 1917-1920 (2007).
-
(2007)
Science
, vol.318
, Issue.5858
, pp. 1917-1920
-
-
Yu, J.1
Vodyanik, M.A.2
Smuga-Otto, K.3
-
12
-
-
38049187707
-
Reprogramming of human somatic cells to pluripotency with defined factors
-
Park IH, Zhao R, West JA et al. Reprogramming of human somatic cells to pluripotency with defined factors. Nature 451(7175), 141-146 (2008).
-
(2008)
Nature
, vol.451
, Issue.7175
, pp. 141-146
-
-
Park, I.H.1
Zhao, R.2
West, J.A.3
-
13
-
-
67049164945
-
Generation of induced pluripotent stem cells from human blood
-
Loh YH, Agarwal S, Park IH et al. Generation of induced pluripotent stem cells from human blood. Blood 113(22), 5476-5479 (2009).
-
(2009)
Blood
, vol.113
, Issue.22
, pp. 5476-5479
-
-
Loh, Y.H.1
Agarwal, S.2
Park, I.H.3
-
14
-
-
55049122748
-
Reprogramming of neural progenitor cells into induced pluripotent stem cells in the absence of exogenous Sox2 expression
-
Eminli S, Utikal J, Arnold K, Jaenisch R, Hochedlinger K. Reprogramming of neural progenitor cells into induced pluripotent stem cells in the absence of exogenous Sox2 expression. Stem Cells 26(10), 2467-2474 (2008).
-
(2008)
Stem Cells
, vol.26
, Issue.10
, pp. 2467-2474
-
-
Eminli, S.1
Utikal, J.2
Arnold, K.3
Jaenisch, R.4
Hochedlinger, K.5
-
15
-
-
41949098160
-
Direct reprogramming of terminally differentiated mature b lymphocytes to pluripotency
-
DOI 10.1016/j.cell.2008.03.028, PII S0092867408004479
-
Hanna J, Markoulaki S, Schorderet P et al. Direct reprogramming of terminally differentiated mature B lymphocytes to pluripotency. Cell 133(2), 250-264 (2008). (Pubitemid 351508307)
-
(2008)
Cell
, vol.133
, Issue.2
, pp. 250-264
-
-
Hanna, J.1
Markoulaki, S.2
Schorderet, P.3
Carey, B.W.4
Beard, C.5
Wernig, M.6
Creyghton, MennoP.7
Steine, E.J.8
Cassady, J.P.9
Foreman, R.10
Lengner, C.J.11
Dausman, JessicaA.12
Jaenisch, R.13
-
16
-
-
50849144675
-
A drug-inducible system for direct reprogramming of human somatic cells to pluripotency
-
Hockemeyer D, Soldner F, Cook EG, Gao Q, Mitalipova M, Jaenisch R. A drug-inducible system for direct reprogramming of human somatic cells to pluripotency. Cell Stem Cell 3(3), 346-353 (2008).
-
(2008)
Cell Stem Cell
, vol.3
, Issue.3
, pp. 346-353
-
-
Hockemeyer, D.1
Soldner, F.2
Cook, E.G.3
Gao, Q.4
Mitalipova, M.5
Jaenisch, R.6
-
17
-
-
64749083939
-
PiggyBac transposition reprograms fibroblasts to induced pluripotent stem cells
-
Woltjen K, Michael IP, Mohseni P et al. piggyBac transposition reprograms fibroblasts to induced pluripotent stem cells. Nature 458(7239), 766-770 (2009).
-
(2009)
Nature
, vol.458
, Issue.7239
, pp. 766-770
-
-
Woltjen, K.1
Michael, I.P.2
Mohseni, P.3
-
18
-
-
66049143859
-
Generation of human induced pluripotent stem cells by direct delivery of reprogramming proteins
-
Kim D, Kim CH, Moon JI et al. Generation of human induced pluripotent stem cells by direct delivery of reprogramming proteins. Cell Stem Cell 4(6), 472-476 (2009).
-
(2009)
Cell Stem Cell
, vol.4
, Issue.6
, pp. 472-476
-
-
Kim, D.1
Kim, C.H.2
Moon, J.I.3
-
19
-
-
79957855262
-
Reprogramming of mouse and human cells to pluripotency using mature microRNAs
-
Miyoshi N, Ishii H, Nagano H et al. Reprogramming of mouse and human cells to pluripotency using mature microRNAs. Cell Stem Cell 8(6), 633-638 (2011).
-
(2011)
Cell Stem Cell 8
, vol.6
, pp. 633-638
-
-
Miyoshi, N.1
Ishii, H.2
Nagano, H.3
-
20
-
-
79955572417
-
Harnessing the potential of induced pluripotent stem cells for regenerative medicine
-
Wu SM, Hochedlinger K. Harnessing the potential of induced pluripotent stem cells for regenerative medicine. Nat. Cell Biol. 13(5), 497-505 (2011).
-
(2011)
Nat. Cell Biol.
, vol.13
, Issue.5
, pp. 497-505
-
-
Wu, S.M.1
Hochedlinger, K.2
-
21
-
-
37549030199
-
Treatment of sickle cell anemia mouse model with iPS cells generated from autologous skin
-
Hanna J, Wernig M, Markoulaki S et al. Treatment of sickle cell anemia mouse model with iPS cells generated from autologous skin. Science 318(5858), 1920-1923 (2007).
-
(2007)
Science
, vol.318
, Issue.5858
, pp. 1920-1923
-
-
Hanna, J.1
Wernig, M.2
Markoulaki, S.3
-
22
-
-
42649130264
-
Neurons derived from reprogrammed fibroblasts functionally integrate into the fetal brain and improve symptoms of rats with Parkinson's disease
-
DOI 10.1073/pnas.0801677105
-
Wernig M, Zhao JP, Pruszak J et al. Neurons derived from reprogrammed fibroblasts functionally integrate into the fetal brain and improve symptoms of rats with Parkinson's disease. Proc. Natl Acad. Sci. USA 105(15), 5856-5861 (2008). (Pubitemid 351758462)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.15
, pp. 5856-5861
-
-
Wernig, M.1
Zhao, J.-P.2
Pruszak, J.3
Hedlund, E.4
Fu, D.5
Soldner, F.6
Broccoli, V.7
Constantine-Paton, M.8
Isacson, O.9
Jaenisch, R.10
-
23
-
-
70349437501
-
Generation of pluripotent stem cells from patients with Type 1 diabetes
-
Maehr R, Chen S, Snitow M et al. Generation of pluripotent stem cells from patients with Type 1 diabetes. Proc. Natl Acad. Sci. USA 106(37), 15768-15773 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, Issue.37
, pp. 15768-15773
-
-
Maehr, R.1
Chen, S.2
Snitow, M.3
-
24
-
-
68249094138
-
Repair of acute myocardial infarction by human stemness factors induced pluripotent stem cells
-
Nelson TJ, Martinez-Fernandez A, Yamada S, Perez-Terzic C, Ikeda Y, Terzic A. Repair of acute myocardial infarction by human stemness factors induced pluripotent stem cells. Circulation 120(5), 408-416 (2009).
-
(2009)
Circulation
, vol.120
, Issue.5
, pp. 408-416
-
-
Nelson, T.J.1
Martinez-Fernandez, A.2
Yamada, S.3
Perez-Terzic, C.4
Ikeda, Y.5
Terzic, A.6
-
25
-
-
58249110796
-
Induced pluripotent stem cells from a spinal muscular atrophy patient
-
Ebert AD, Yu J, Rose FF Jr et al. Induced pluripotent stem cells from a spinal muscular atrophy patient. Nature 457(7227), 277-280 (2009).
-
(2009)
Nature
, vol.457
, Issue.7227
, pp. 277-280
-
-
Ebert, A.D.1
Yu, J.2
Rose Jr., F.F.3
-
26
-
-
80053375853
-
Induced pluripotent stem cells from highly endangered species
-
Ben-Nun IF, Montague SC, Houck ML et al. Induced pluripotent stem cells from highly endangered species. Nat. Methods 8(10), 829-831 (2011).
-
(2011)
Nat. Methods
, vol.8
, Issue.10
, pp. 829-831
-
-
Ben-Nun, I.F.1
Montague, S.C.2
Houck, M.L.3
-
27
-
-
39149130361
-
Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming
-
DOI 10.1016/j.cell.2008.01.015, PII S0092867408001153
-
Jaenisch R, Young R. Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming. Cell 132(4), 567-582 (2008). (Pubitemid 351253686)
-
(2008)
Cell
, vol.132
, Issue.4
, pp. 567-582
-
-
Jaenisch, R.1
Young, R.2
-
28
-
-
77950995392
-
Hemangioblastic derivatives from human induced pluripotent stem cells exhibit limited expansion and early senescence
-
Feng Q, Lu SJ, Klimanskaya I et al. Hemangioblastic derivatives from human induced pluripotent stem cells exhibit limited expansion and early senescence. Stem Cells 28(4), 704-712 (2010).
-
(2010)
Stem Cells
, vol.28
, Issue.4
, pp. 704-712
-
-
Feng, Q.1
Lu, S.J.2
Klimanskaya, I.3
-
29
-
-
77749279749
-
Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency
-
Hu BY, Weick JP, Yu J et al. Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency. Proc. Natl Acad. Sci. USA 107(9), 4335-4340 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, Issue.9
, pp. 4335-4340
-
-
Hu, B.Y.1
Weick, J.P.2
Yu, J.3
-
30
-
-
67649222358
-
Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures
-
Chin MH, Mason MJ, Xie W et al. Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell 5(1), 111-123 (2009).
-
(2009)
Cell Stem Cell
, vol.5
, Issue.1
, pp. 111-123
-
-
Chin, M.H.1
Mason, M.J.2
Xie, W.3
-
31
-
-
77956250728
-
Molecular analyses of human induced pluripotent stem cells and embryonic stem cells
-
Chin MH, Pellegrini M, Plath K, Lowry WE. Molecular analyses of human induced pluripotent stem cells and embryonic stem cells. Cell Stem Cell 7(2), 263-269 (2010).
-
(2010)
Cell Stem Cell
, vol.7
, Issue.2
, pp. 263-269
-
-
Chin, M.H.1
Pellegrini, M.2
Plath, K.3
Lowry, W.E.4
-
32
-
-
77956260872
-
Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells
-
Guenther MG, Frampton GM, Soldner F et al. Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells. Cell Stem Cell 7(2), 249-257 (2010).
-
(2010)
Cell Stem Cell 7
, vol.2
, pp. 249-257
-
-
Guenther, M.G.1
Frampton, G.M.2
Soldner, F.3
-
33
-
-
77956247114
-
Lab-specific gene expression signatures in pluripotent stem cells
-
Newman AM, Cooper JB. Lab-specific gene expression signatures in pluripotent stem cells. Cell Stem Cell 7(2), 258-262 (2010).
-
(2010)
Cell Stem Cell
, vol.7
, Issue.2
, pp. 258-262
-
-
Newman, A.M.1
Cooper, J.B.2
-
34
-
-
25144525014
-
Core transcriptional regulatory circuitry in human embryonic stem cells
-
DOI 10.1016/j.cell.2005.08.020, PII S0092867405008251
-
Boyer LA, Lee TI, Cole MF et al. Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122(6), 947-956 (2005). (Pubitemid 41345211)
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 947-956
-
-
Boyer, L.A.1
Tong, I.L.2
Cole, M.F.3
Johnstone, S.E.4
Levine, S.S.5
Zucker, J.P.6
Guenther, M.G.7
Kumar, R.M.8
Murray, H.L.9
Jenner, R.G.10
Gifford, D.K.11
Melton, D.A.12
Jaenisch, R.13
Young, R.A.14
-
35
-
-
52149097555
-
Regulatory networks define phenotypic classes of human stem cell lines
-
Müller FJ, Laurent LC, Kostka D et al. Regulatory networks define phenotypic classes of human stem cell lines. Nature 455(7211), 401-405 (2008).
-
(2008)
Nature
, vol.455
, Issue.7211
, pp. 401-405
-
-
Müller, F.J.1
Laurent, L.C.2
Kostka, D.3
-
36
-
-
78650752402
-
Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells
-
Polo JM, Liu S, Figueroa ME et al. Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells. Nat. Biotechnol. 28(8), 848-855 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, Issue.8
, pp. 848-855
-
-
Polo, J.M.1
Liu, S.2
Figueroa, M.E.3
-
37
-
-
85027958626
-
Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells
-
Ohi Y, Qin H, Hong C et al. Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells. Nat Cell Biol. 13(5), 541-549 (2011).
-
(2011)
Nat Cell Biol.
, vol.13
, Issue.5
, pp. 541-549
-
-
Ohi, Y.1
Qin, H.2
Hong, C.3
-
38
-
-
34249299791
-
The complex language of chromatin regulation during transcription
-
DOI 10.1038/nature05915, PII NATURE05915
-
Berger SL. The complex language of chromatin regulation during transcription. Nature 447(7143), 407-412 (2007). (Pubitemid 46816746)
-
(2007)
Nature
, vol.447
, Issue.7143
, pp. 407-412
-
-
Berger, S.L.1
-
39
-
-
67349190247
-
Linking DNA methylation and histone modification: Patterns and paradigms
-
Cedar H, Bergman Y. Linking DNA methylation and histone modification: patterns and paradigms. Nat. Rev. Genet. 10(5), 295-304 (2009).
-
(2009)
Nat. Rev. Genet.
, vol.10
, Issue.5
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
40
-
-
0026740497
-
Developmental pattern of gene-specific DNA methylation in the mouse embryo and germ line
-
Kafri T, Ariel M, Brandeis M et al. Developmental pattern of gene-specific DNA methylation in the mouse embryo and germ line. Genes Dev. 6(5), 705-714 (1992).
-
(1992)
Genes Dev
, vol.6
, Issue.5
, pp. 705-714
-
-
Kafri, T.1
Ariel, M.2
Brandeis, M.3
-
41
-
-
80052739322
-
Genomic approaches to deconstruct pluripotency
-
Loh YH, Yang L, Yang JC, Li H, Collins JJ, Daley GQ. Genomic approaches to deconstruct pluripotency. Annu. Rev. Genomics Hum. Genet. 12, 165-185 (2011).
-
(2011)
Annu. Rev. Genomics Hum. Genet.
, vol.12
, pp. 165-185
-
-
Loh, Y.H.1
Yang, L.2
Yang, J.C.3
Li, H.4
Collins, J.J.5
Daley, G.Q.6
-
42
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler MB, Murr R, Burger L et al. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480(7378), 490-495 (2011).
-
(2011)
Nature
, vol.480
, Issue.7378
, pp. 490-495
-
-
Stadler, M.B.1
Murr, R.2
Burger, L.3
-
43
-
-
64349106730
-
Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming
-
Deng J, Shoemaker R, Xie B et al. Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming. Nat. Biotechnol. 27(4), 353-360 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.4
, pp. 353-360
-
-
Deng, J.1
Shoemaker, R.2
Xie, B.3
-
44
-
-
70649095120
-
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
-
Doi A, Park IH, Wen B et al. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat. Genet. 41(12), 1350-1353 (2009).
-
(2009)
Nat. Genet.
, vol.41
, Issue.12
, pp. 1350-1353
-
-
Doi, A.1
Park, I.H.2
Wen, B.3
-
45
-
-
77955449906
-
Epigenetic memory in induced pluripotent stem cells
-
Kim K, Doi A, Wen B et al. Epigenetic memory in induced pluripotent stem cells. Nature 467(7313), 285-290 (2010).
-
(2010)
Nature
, vol.467
, Issue.7313
, pp. 285-290
-
-
Kim, K.1
Doi, A.2
Wen, B.3
-
46
-
-
83255177149
-
Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells
-
Kim K, Zhao R, Doi A et al. Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells. Nat. Biotech. 29(12), 1117-1119 (2011).
-
(2011)
Nat. Biotech.
, vol.29
, Issue.12
, pp. 1117-1119
-
-
Kim, K.1
Zhao, R.2
Doi, A.3
-
47
-
-
79551677421
-
Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines
-
Bock C, Kiskinis E, Verstappen G et al. Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines. Cell 144(3), 439-452 (2011).
-
(2011)
Cell
, vol.144
, Issue.3
, pp. 439-452
-
-
Bock, C.1
Kiskinis, E.2
Verstappen, G.3
-
48
-
-
79952264847
-
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
-
Lister R, Pelizzola M, Kida YS et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature 471(7336), 68-73 (2011).
-
(2011)
Nature
, vol.471
, Issue.7336
, pp. 68-73
-
-
Lister, R.1
Pelizzola, M.2
Kida, Y.S.3
-
49
-
-
77953809032
-
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
-
Hawkins RD, Hon GC, Lee LK et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell 6(5), 479-491 (2010).
-
(2010)
Cell Stem Cell
, vol.6
, Issue.5
, pp. 479-491
-
-
Hawkins, R.D.1
Hon, G.C.2
Lee, L.K.3
-
50
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
DOI 10.1016/j.cell.2005.01.001, PII S0092867405000395
-
Bernstein BE, Kamal M, Lindblad-Toh K et al. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120(2), 169-181 (2005). (Pubitemid 40174761)
-
(2005)
Cell
, vol.120
, Issue.2
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas III, E.J.9
Gingeras, T.R.10
Schreiber, S.L.11
Lander, E.S.12
-
51
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
DOI 10.1038/nature04733, PII NATURE04733
-
Boyer LA, Plath K, Zeitlinger J et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441(7091), 349-353 (2006). (Pubitemid 44050199)
-
(2006)
Nature
, vol.441
, Issue.7091
, pp. 349-353
-
-
Boyer, L.A.1
Plath, K.2
Zeitlinger, J.3
Brambrink, T.4
Medeiros, L.A.5
Lee, T.I.6
Levine, S.S.7
Wernig, M.8
Tajonar, A.9
Ray, M.K.10
Bell, G.W.11
Otte, A.P.12
Vidal, M.13
Gifford, D.K.14
Young, R.A.15
Jaenisch, R.16
-
52
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, Mikkelsen TS, Xie X et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125(2), 315-326 (2006).
-
(2006)
Cell
, vol.125
, Issue.2
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
-
53
-
-
34548434716
-
Whole-genome analysis of histone h3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
DOI 10.1016/j.stem.2007.08.003, PII S1934590907001221
-
Pan G, Tian S, Nie J et al. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1(3), 299-312 (2007). (Pubitemid 47355329)
-
(2007)
Cell Stem Cell
, vol.1
, Issue.3
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
Wei, H.6
Jonsdottir, G.A.7
Stewart, R.8
Thomson, J.A.9
-
54
-
-
69949156902
-
A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos
-
Akkers RC, van Heeringen SJ, Jacobi UG et al. A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos. Dev. Cell 17(3), 425-434 (2009
-
(2009)
Dev. Cell
, vol.17
, Issue.3
, pp. 425-434
-
-
Akkers, R.C.1
Van Heeringen, S.J.2
Jacobi, U.G.3
-
55
-
-
58849088872
-
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos
-
Schuettengruber B, Ganapathi M, Leblanc B et al. Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos. PLoS Biol. 7(1), e13 (2009).
-
(2009)
PLoS Biol
, vol.7
, Issue.1
-
-
Schuettengruber, B.1
Ganapathi, M.2
Leblanc, B.3
-
56
-
-
46449094276
-
Dissecting direct reprogramming through integrative genomic analysis
-
DOI 10.1038/nature07056, PII NATURE07056
-
Mikkelsen TS, Hanna J, Zhang X et al. Dissecting direct reprogramming through integrative genomic analysis. Nature 454(7200), 49-55 (2008). (Pubitemid 351931978)
-
(2008)
Nature
, vol.454
, Issue.7200
, pp. 49-55
-
-
Mikkelsen, T.S.1
Hanna, J.2
Zhang, X.3
Ku, M.4
Wernig, M.5
Schorderet, P.6
Bernstein, B.E.7
Jaenisch, R.8
Lander, E.S.9
Meissner, A.10
-
57
-
-
73049110243
-
The EMT-activator ZEB1 promotes tumorigenicity by repressing stemnessinhibiting microRNAs
-
Wellner U, Schubert J, Burk UC et al. The EMT-activator ZEB1 promotes tumorigenicity by repressing stemnessinhibiting microRNAs. Nat. Cell Biol. 11(12), 1487-1495 (2009).
-
(2009)
Nat. Cell Biol.
, vol.11
, Issue.12
, pp. 1487-1495
-
-
Wellner, U.1
Schubert, J.2
Burk, U.C.3
-
58
-
-
67349149082
-
MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells
-
Xu N, Papagiannakopoulos T, Pan G, Thomson JA, Kosik KS. MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells. Cell 137(4), 647-658 (2009).
-
(2009)
Cell
, vol.137
, Issue.4
, pp. 647-658
-
-
Xu, N.1
Papagiannakopoulos, T.2
Pan, G.3
Thomson, J.A.4
Kosik, K.S.5
-
59
-
-
77956320116
-
Functional genomics reveals a BMP-driven mesenchymal-to-epithelial transition in the initiation of somatic cell reprogramming
-
Samavarchi-Tehrani P, Golipour A, David L et al. Functional genomics reveals a BMP-driven mesenchymal-to-epithelial transition in the initiation of somatic cell reprogramming. Cell Stem Cell 7(1), 64-77 (2010).
-
(2010)
Cell Stem Cell
, vol.7
, Issue.1
, pp. 64-77
-
-
Samavarchi-Tehrani, P.1
Golipour, A.2
David, L.3
-
60
-
-
79955780736
-
Multiple targets of miR-302 and miR-372 promote reprogramming of human fibroblasts to induced pluripotent stem cells
-
Subramanyam D, Lamouille S, Judson RL et al. Multiple targets of miR-302 and miR-372 promote reprogramming of human fibroblasts to induced pluripotent stem cells. Nat. Biotechnol. 29(5), 443-448 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.5
, pp. 443-448
-
-
Subramanyam, D.1
Lamouille, S.2
Judson, R.L.3
-
61
-
-
79953881831
-
Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency
-
Anokye-Danso F, Trivedi CM, Juhr D et al. Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency. Cell Stem Cell 8(4), 376-388 (2011).
-
(2011)
Cell Stem Cell
, vol.8
, Issue.4
, pp. 376-388
-
-
Anokye-Danso, F.1
Trivedi, C.M.2
Juhr, D.3
-
62
-
-
66249120339
-
MicroRNA profiling of human-induced pluripotent stem cells
-
Wilson KD, Venkatasubrahmanyam S, Jia F, Sun N, Butte AJ, Wu JC. MicroRNA profiling of human-induced pluripotent stem cells. Stem Cells Dev. 18(5), 749-758 (2009).
-
(2009)
Stem Cells Dev
, vol.18
, Issue.5
, pp. 749-758
-
-
Wilson, K.D.1
Venkatasubrahmanyam, S.2
Jia, F.3
Sun, N.4
Butte, A.J.5
Wu, J.C.6
-
63
-
-
27144538978
-
Genomic alterations in cultured human embryonic stem cells
-
DOI 10.1038/ng1631, PII N1631
-
Maitra A, Arking DE, Shivapurkar N et al. Genomic alterations in cultured human embryonic stem cells. Nat. Genet. 37(10), 1099-1103 (2005). (Pubitemid 41486662)
-
(2005)
Nature Genetics
, vol.37
, Issue.10
, pp. 1099-1103
-
-
Maitra, A.1
Arking, D.E.2
Shivapurkar, N.3
Ikeda, M.4
Stastny, V.5
Kassauei, K.6
Sui, G.7
Cutler, D.J.8
Liu, Y.9
Brimble, S.N.10
Noaksson, K.11
Hyllner, J.12
Schulz, T.C.13
Zeng, X.14
Freed, W.J.15
Crook, J.16
Abraham, S.17
Colman, A.18
Sartipy, P.19
Matsui, S.-I.20
Carpenter, M.21
Gazdar, A.F.22
Rao, M.23
Chakravarti, A.24
more..
-
64
-
-
33846879559
-
Adaptation to culture of human embryonic stem cells and oncogenesis in vivo
-
DOI 10.1038/nbt1285, PII NBT1285
-
Baker DE, Harrison NJ, Maltby E et al. Adaptation to culture of human embryonic stem cells and oncogenesis in vivo. Nat. Biotechnol. 25(2), 207-215 (2007). (Pubitemid 46227120)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.2
, pp. 207-215
-
-
Baker, D.E.C.1
Harrison, N.J.2
Maltby, E.3
Smith, K.4
Moore, H.D.5
Shaw, P.J.6
Heath, P.R.7
Holden, H.8
Andrews, P.W.9
-
65
-
-
79952126043
-
Copy number variation and selection during reprogramming to pluripotency
-
Hussein SM, Batada NN, Vuoristo S et al. Copy number variation and selection during reprogramming to pluripotency. Nature 471(7336), 58-62 (2011).
-
(2011)
Nature
, vol.471
, Issue.7336
, pp. 58-62
-
-
Hussein, S.M.1
Batada, N.N.2
Vuoristo, S.3
-
66
-
-
78650971216
-
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture
-
Laurent LC, Ulitsky I, Slavin I et al. Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture. Cell Stem Cell 8(1), 106-118 (2011).
-
(2011)
Cell Stem Cell
, vol.8
, Issue.1
, pp. 106-118
-
-
Laurent, L.C.1
Ulitsky, I.2
Slavin, I.3
-
67
-
-
79952258224
-
Somatic coding mutations in human induced pluripotent stem cells
-
Gore A, Li Z, Fung HL et al. Somatic coding mutations in human induced pluripotent stem cells. Nature 471(7336), 63-67 (2011).
-
(2011)
Nature
, vol.471
, Issue.7336
, pp. 63-67
-
-
Gore, A.1
Li, Z.2
Fung, H.L.3
-
68
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser B, Busse D, Li N et al. Global quantification of mammalian gene expression control. Nature 473(7347), 337-342 (2011).
-
(2011)
Nature
, vol.473
, Issue.7347
, pp. 337-342
-
-
Schwanhäusser, B.1
Busse, D.2
Li, N.3
-
69
-
-
77956304093
-
Mass spectrometry in high-throughput proteomics: Ready for the big time
-
Nilsson T, Mann M, Aebersold R, Yates JR 3rd, Bairoch A, Bergeron JJ. Mass spectrometry in high-throughput proteomics: Ready for the big time. Nat. Methods 7(9), 681-685 (2010).
-
(2010)
Nat. Methods
, vol.7
, Issue.9
, pp. 681-685
-
-
Nilsson, T.1
Mann, M.2
Aebersold, R.3
Yates III, J.R.4
Bairoch, A.5
Bergeron, J.J.6
-
70
-
-
79959424627
-
Quantitative, highresolution proteomics for data-driven systems biology
-
Cox J, Mann M. Quantitative, highresolution proteomics for data-driven systems biology. Annu. Rev. Biochem. 80, 273-299 (2011).
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 273-299
-
-
Cox, J.1
Mann, M.2
-
71
-
-
35848970747
-
Mapping protein post-translational modifications with mass spectrometry
-
DOI 10.1038/nmeth1100, PII NMETH1100
-
Witze ES, Old WM, Resing KA, Ahn NG. Mapping protein post-translational modifications with mass spectrometry. Nat. Methods 4(10), 798-806 (2007). (Pubitemid 350055576)
-
(2007)
Nature Methods
, vol.4
, Issue.10
, pp. 798-806
-
-
Witze, E.S.1
Old, W.M.2
Resing, K.A.3
Ahn, N.G.4
-
73
-
-
70450160004
-
Systems-level dynamic analyses of fate change in murine embryonic stem cells
-
Lu R, Markowetz F, Unwin RD et al. Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 462(7271), 358-362 (2009).
-
(2009)
Nature
, vol.462
, Issue.7271
, pp. 358-362
-
-
Lu, R.1
Markowetz, F.2
Unwin, R.D.3
-
74
-
-
77949881949
-
An expanded Oct4 interaction network: Implications for stem cell biology, development, and disease
-
Pardo M, Lang B, Yu L et al. An expanded Oct4 interaction network: Implications for stem cell biology, development, and disease. Cell Stem Cell 6(4), 382-395 (2010).
-
(2010)
Cell Stem Cell
, vol.6
, Issue.4
, pp. 382-395
-
-
Pardo, M.1
Lang, B.2
Yu, L.3
-
75
-
-
77949900026
-
An Oct4-centered protein interaction network in embryonic stem cells
-
van den Berg DL, Snoek T, Mullin NP et al. An Oct4-centered protein interaction network in embryonic stem cells. Cell Stem Cell 6(4), 369-381 (2010).
-
(2010)
Cell Stem Cell
, vol.6
, Issue.4
, pp. 369-381
-
-
Van Den Berg, D.L.1
Snoek, T.2
Mullin, N.P.3
-
76
-
-
77949862634
-
Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes
-
Van Hoof D, Dormeyer W, Braam SR et al. Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes. J. Proteome Res. 9(3), 1610-1618 (2010).
-
(2010)
J. Proteome Res.
, vol.9
, Issue.3
, pp. 1610-1618
-
-
Van Hoof, D.1
Dormeyer, W.2
Braam, S.R.3
-
77
-
-
63049129915
-
An enhanced mass spectrometry approach reveals human embryonic stem cell growth factors in culture
-
Bendall SC, Hughes C, Campbell JL et al. An enhanced mass spectrometry approach reveals human embryonic stem cell growth factors in culture. Mol. Cell Proteomics 8(3), 421-432 (2009).
-
(2009)
Mol. Cell Proteomics
, vol.8
, Issue.3
, pp. 421-432
-
-
Bendall, S.C.1
Hughes, C.2
Campbell, J.L.3
-
78
-
-
80053940442
-
Investigating the role of FGF-2 in stem cell maintenance by global phosphoproteomics profiling
-
Zoumaro-Djayoon AD, Ding V, Foong L-Y, Choo A, Heck AJR, Muñoz J. Investigating the role of FGF-2 in stem cell maintenance by global phosphoproteomics profiling. Proteomics 11(20), 3962-3971 (2011).
-
(2011)
Proteomics
, vol.11
, Issue.20
, pp. 3962-3971
-
-
Zoumaro-Djayoon, A.D.1
Ding, V.2
Foong, L.-Y.3
Choo, A.4
Heck, A.J.R.5
Muñoz, J.6
-
79
-
-
67849121794
-
Phosphoproteomic analysis of human embryonic stem cells
-
Brill LM, Xiong W, Lee KB et al. Phosphoproteomic analysis of human embryonic stem cells. Cell Stem Cell 5(2), 204-213 (2009).
-
(2009)
Cell Stem Cell
, vol.5
, Issue.2
, pp. 204-213
-
-
Brill, L.M.1
Xiong, W.2
Lee, K.B.3
-
80
-
-
67849106825
-
Phosphorylation dynamics during early differentiation of human embryonic stem cells
-
Van Hoof D, Muñoz J, Braam SR et al. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell 5(2), 214-226 (2009).
-
(2009)
Cell Stem Cell
, vol.5
, Issue.2
, pp. 214-226
-
-
Van Hoof, D.1
Muñoz, J.2
Braam, S.R.3
-
81
-
-
79952752375
-
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation
-
Rigbolt KT, Prokhorova TA, Akimov V et al. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. Sci. Signal. 4(164), rs3 (2011).
-
(2011)
Sci. Signal.
, vol.4
, Issue.164
-
-
Rigbolt, K.T.1
Prokhorova, T.A.2
Akimov, V.3
-
82
-
-
81855227172
-
Proteomics and pluripotency
-
Brumbaugh J, Rose CM, Phanstiel DH, Thomson JA, Coon JJ. Proteomics and pluripotency. Crit. Rev. Biochem. Mol. Biol. 46(6), 493-506 (2011).
-
(2011)
Crit. Rev. Biochem. Mol. Biol.
, vol.46
, Issue.6
, pp. 493-506
-
-
Brumbaugh, J.1
Rose, C.M.2
Phanstiel, D.H.3
Thomson, J.A.4
Coon, J.J.5
-
83
-
-
79951893034
-
Defining pluripotent stem cells through quantitative proteomic analysis
-
Reiland S, Salekdeh GH, Krijgsveld J. Defining pluripotent stem cells through quantitative proteomic analysis. Expert Rev. Proteomics 8(1), 29-42 (2011).
-
(2011)
Expert Rev. Proteomics
, vol.8
, Issue.1
, pp. 29-42
-
-
Reiland, S.1
Salekdeh, G.H.2
Krijgsveld, J.3
-
84
-
-
82155179339
-
The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells
-
Munoz J, Low TY, Kok YJ et al. The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells. Mol. Syst. Biol. 7, 550 (2011).
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 550
-
-
Munoz, J.1
Low, T.Y.2
Kok, Y.J.3
-
85
-
-
80053374337
-
Proteomic and phosphoproteomic comparison of human ES and iPS cells
-
Phanstiel DH, Brumbaugh J, Wenger CD et al. Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nat. Methods 8(10), 821-827 (2011).
-
(2011)
Nat. Methods 8
, vol.10
, pp. 821-827
-
-
Phanstiel, D.H.1
Brumbaugh, J.2
Wenger, C.D.3
-
86
-
-
84861987924
-
Comparative proteomic analysis of human somatic cells, induced pluripotent stem cells, and embryonic stem cells
-
Kim SY, Kim M-J, Jung H et al. Comparative proteomic analysis of human somatic cells, induced pluripotent stem cells, and embryonic stem cells. Stem Cells Dev. 21(18), 1272-1286 (2011).
-
(2011)
Stem Cells Dev
, vol.21
, Issue.18
, pp. 1272-1286
-
-
Kim, S.Y.1
Kim, M.-J.2
Jung, H.3
-
87
-
-
84859586010
-
Quantitative proteomic analysis of mouse embryonic fibroblasts and induced pluripotent stem cells using 16O/18O labeling
-
Huang X, Tian C, Liu M et al. Quantitative proteomic analysis of mouse embryonic fibroblasts and induced pluripotent stem cells using 16O/18O labeling. J. Proteome Res. 11(4), 2091-2102 (2012).
-
(2012)
J. Proteome Res.
, vol.11
, Issue.4
, pp. 2091-2102
-
-
Huang, X.1
Tian, C.2
Liu, M.3
-
88
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using aminereactive isobaric tagging reagents
-
Ross PL, Huang YN, Marchese JN et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using aminereactive isobaric tagging reagents. Mol. Cell Proteomics 3(12), 1154-1169 (2004).
-
(2004)
Mol. Cell Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
-
89
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
Boersema PJ, Raijmakers R, Lemeer S, Mohammed S, Heck AJ. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 4(4), 484-494 (2009).
-
(2009)
Nat. Protoc.
, vol.4
, Issue.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.5
-
90
-
-
39749186759
-
2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster
-
DOI 10.1021/pr700605z
-
Pinkse MW, Mohammed S, Gouw JW, van Breukelen B, Vos HR, Heck AJ. Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster. J. Proteome Res. 7(2), 687-697 (2008). (Pubitemid 351294031)
-
(2008)
Journal of Proteome Research
, vol.7
, Issue.2
, pp. 687-697
-
-
Pinkse, M.W.H.1
Mohammed, S.2
Gouw, J.W.3
Van Breukelen, B.4
Vos, H.R.5
Heck, A.J.R.6
-
91
-
-
66349106471
-
Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach
-
Gauci S, Helbig AO, Slijper M, Krijgsveld J, Heck AJ, Mohammed S. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. Anal. Chem. 81(11), 4493-4501 (2009).
-
(2009)
Anal. Chem.
, vol.81
, Issue.11
, pp. 4493-4501
-
-
Gauci, S.1
Helbig, A.O.2
Slijper, M.3
Krijgsveld, J.4
Heck, A.J.5
Mohammed, S.6
-
92
-
-
79955831978
-
Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos
-
Frese CK, Altelaar AF, Hennrich ML et al. Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos. J. Proteome Res. 10(5), 2377-2388 (2011).
-
(2011)
J. Proteome Res.
, vol.10
, Issue.5
, pp. 2377-2388
-
-
Frese, C.K.1
Altelaar, A.F.2
Hennrich, M.L.3
-
93
-
-
34548356772
-
An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics [1]
-
DOI 10.1038/nmeth0907-677, PII NMETH0907-677
-
Van Hoof D, Pinkse MW, Oostwaard DW, Mummery CL, Heck AJ, Krijgsveld J. An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics. Nat. Methods 4(9), 677-678 (2007). (Pubitemid 47338150)
-
(2007)
Nature Methods
, vol.4
, Issue.9
, pp. 677-678
-
-
Van Hoof, D.1
Pinkse, M.W.H.2
Oostwaard, D.W.-V.3
Mummery, C.L.4
Heck, A.J.R.5
Krijgsveld, J.6
-
94
-
-
52649167339
-
Prevention of amino acid conversion in SILAC experiments with embryonic stem cells
-
Bendall SC, Hughes C, Stewart MH, Doble B, Bhatia M, Lajoie GA. Prevention of amino acid conversion in SILAC experiments with embryonic stem cells. Mol. Cell Proteomics 7(9), 1587-1597 (2008).
-
(2008)
Mol. Cell Proteomics
, vol.7
, Issue.9
, pp. 1587-1597
-
-
Bendall, S.C.1
Hughes, C.2
Stewart, M.H.3
Doble, B.4
Bhatia, M.5
Lajoie, G.A.6
-
95
-
-
42649132889
-
Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins
-
DOI 10.1074/mcp.M700460-MCP200
-
Graumann J, Hubner NC, Kim JB et al. Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Mol. Cell Proteomics 7(4), 672-683 (2008). (Pubitemid 351597479)
-
(2008)
Molecular and Cellular Proteomics
, vol.7
, Issue.4
, pp. 672-683
-
-
Graumann, J.1
Hubner, N.C.2
Kim, J.B.3
Ko, K.4
Moser, M.5
Kumar, C.6
Cox, J.7
Scholer, H.8
Mann, M.9
-
96
-
-
77955159809
-
Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap
-
Pichler P, Köcher T, Holzmann J et al. Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap. Anal. Chem. 82(15), 6549-6558 (2010).
-
(2010)
Anal. Chem.
, vol.82
, Issue.15
, pp. 6549-6558
-
-
Pichler, P.1
Köcher, T.2
Holzmann, J.3
-
97
-
-
80155124832
-
MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
-
Ting L, Rad R, Gygi SP, Haas W. MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics. Nat. Meth. 8(11), 937-940 (2011).
-
(2011)
Nat. Meth.
, vol.8
, Issue.11
, pp. 937-940
-
-
Ting, L.1
Rad, R.2
Gygi, S.P.3
Haas, W.4
-
98
-
-
80155205237
-
Gasphase purification enables accurate, multiplexed proteome quantification with isobaric tagging
-
Wenger CD, Lee MV, Hebert AS et al. Gasphase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nat. Meth. 8(11), 933-935 (2011).
-
(2011)
Nat. Meth.
, vol.8
, Issue.11
, pp. 933-935
-
-
Wenger, C.D.1
Lee, M.V.2
Hebert, A.S.3
-
99
-
-
34848819400
-
Comparative evaluation of tandem MS search algorithms using a target-decoy search stategy
-
DOI 10.1074/mcp.M600469-MCP200
-
Balgley BM, Laudeman T, Yang L, Song T, Lee CS. Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy. Mol. Cell Proteomics 6(9), 1599-1608 (2007). (Pubitemid 47506170)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.9
, pp. 1599-1608
-
-
Balgley, B.M.1
Laudeman, T.2
Yang, L.3
Song, T.4
Lee, C.S.5
-
100
-
-
84859826026
-
Generic comparison of protein inference engines
-
O110007088 2011
-
Claassen M, Reiter L, Hengartner MO, Buhmann JM, Aebersold R. Generic comparison of protein inference engines. Mol. Cell Proteomics. 11(4), O110.007088 (2011).
-
Mol. Cell Proteomics.
, vol.11
, Issue.4
-
-
Claassen, M.1
Reiter, L.2
Hengartner, M.O.3
Buhmann, J.M.4
Aebersold, R.5
-
102
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
Nagaraj N, Wisniewski JR, Geiger T et al. Deep proteome and transcriptome mapping of a human cancer cell line. Mol. Syst. Biol. 7, 548 (2011).
-
(2011)
Mol. Syst. Biol.
, vol.7
, Issue.548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
-
103
-
-
80052223272
-
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming
-
Gabut M, Samavarchi-Tehrani P, Wang X et al. An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell 147(1), 132-146 (2011).
-
(2011)
Cell
, vol.147
, Issue.1
, pp. 132-146
-
-
Gabut, M.1
Samavarchi-Tehrani, P.2
Wang, X.3
-
104
-
-
84855539848
-
Targeted RNA sequencing reveals the deep complexity of the human transcriptome
-
Mercer TR, Gerhardt DJ, Dinger ME et al. Targeted RNA sequencing reveals the deep complexity of the human transcriptome. Nat. Biotechnol. 30(1), 99-104 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, Issue.1
, pp. 99-104
-
-
Mercer, T.R.1
Gerhardt, D.J.2
Dinger, M.E.3
-
105
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, Villén J, Shin C, Camargo FD, Gygi SP, Bartel DP. The impact of microRNAs on protein output. Nature 455(7209), 64-71 (2008).
-
(2008)
Nature
, vol.455
, Issue.7209
, pp. 64-71
-
-
Baek, D.1
Villén, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
106
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhäusser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N. Widespread changes in protein synthesis induced by microRNAs. Nature 455(7209), 58-63 (2008).
-
(2008)
Nature
, vol.455
, Issue.7209
, pp. 58-63
-
-
Selbach, M.1
Schwanhäusser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
107
-
-
78149287968
-
Proteomic analysis of Sox2-associated proteins during early stages of mouse embryonic stem cell differentiation identifies Sox21 as a novel regulator of stem cell fate
-
Mallanna SK, Ormsbee BD, Iacovino M et al. Proteomic analysis of Sox2-associated proteins during early stages of mouse embryonic stem cell differentiation identifies Sox21 as a novel regulator of stem cell fate. Stem Cells 28(10), 1715-1727 (2010).
-
(2010)
Stem Cells
, vol.28
, Issue.10
, pp. 1715-1727
-
-
Mallanna, S.K.1
Ormsbee, B.D.2
Iacovino, M.3
-
108
-
-
33751092246
-
A protein interaction network for pluripotency of embryonic stem cells
-
DOI 10.1038/nature05284, PII NATURE05284
-
Wang J, Rao S, Chu J et al. A protein interaction network for pluripotency of embryonic stem cells. Nature 444(7117), 364-368 (2006). (Pubitemid 44764111)
-
(2006)
Nature
, vol.444
, Issue.7117
, pp. 364-368
-
-
Wang, J.1
Rao, S.2
Chu, J.3
Shen, X.4
Levasseur, D.N.5
Theunissen, T.W.6
Orkin, S.H.7
-
109
-
-
79551551457
-
Resources for proteomics in mouse embryonic stem cells
-
Schnütgen F, Ehrmann F, Poser I et al. Resources for proteomics in mouse embryonic stem cells. Nat. Methods 8(2), 103-104 (2011).
-
(2011)
Nat. Methods
, vol.8
, Issue.2
, pp. 103-104
-
-
Schnütgen, F.1
Ehrmann, F.2
Poser, I.3
-
110
-
-
79955615662
-
The transcriptional and signalling networks of pluripotency
-
Ng HH, Surani MA. The transcriptional and signalling networks of pluripotency. Nat. Cell Biol. 13(5), 490-496 (2011).
-
(2011)
Nat. Cell Biol.
, vol.13
, Issue.5
, pp. 490-496
-
-
Ng, H.H.1
Surani, M.A.2
-
111
-
-
0344845415
-
BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3
-
DOI 10.1016/S0092-8674(03)00847-X
-
Ying QL, Nichols J, Chambers I, Smith A. BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3. Cell 115(3), 281-292 (2003). (Pubitemid 37487702)
-
(2003)
Cell
, vol.115
, Issue.3
, pp. 281-292
-
-
Ying, Q.-L.1
Nichols, J.2
Chambers, I.3
Smith, A.4
-
112
-
-
27644486756
-
Activin/Nodal and FGF pathways cooperate to maintain pluripotency of human embryonic stem cells
-
DOI 10.1242/jcs.02553
-
Vallier L, Alexander M, Pedersen RA. Activin/Nodal and FGF pathways cooperate to maintain pluripotency of human embryonic stem cells. J. Cell. Sci. 118(Pt 19), 4495-4509 (2005). (Pubitemid 41556347)
-
(2005)
Journal of Cell Science
, vol.118
, Issue.19
, pp. 4495-4509
-
-
Vallier, L.1
Alexander, M.2
Pedersen, R.A.3
-
113
-
-
18744375483
-
Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells
-
DOI 10.1038/nmeth744
-
Xu RH, Peck RM, Li DS, Feng X, Ludwig T, Thomson JA. Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells. Nat. Methods 2(3), 185-190 (2005). (Pubitemid 41122125)
-
(2005)
Nature Methods
, vol.2
, Issue.3
, pp. 185-190
-
-
Xu, R.-H.1
Peck, R.M.2
Li, D.S.3
Feng, X.4
Ludwig, T.5
Thomson, J.A.6
-
114
-
-
1842426937
-
Regulation of human embryonic stem cell differentiation by BMP-2 and its antagonist noggin
-
DOI 10.1242/jcs.00970
-
Pera MF, Andrade J, Houssami S et al. Regulation of human embryonic stem cell differentiation by BMP-2 and its antagonist noggin. J. Cell. Sci. 117(Pt 7), 1269-1280 (2004). (Pubitemid 38456107)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.7
, pp. 1269-1280
-
-
Pera, M.F.1
Andrade, J.2
Houssami, S.3
Reubinoff, B.4
Trounson, A.5
Stanley, E.G.6
Ward-van Oostwaard, D.7
Mummery, C.8
-
115
-
-
1842853507
-
BMP4 initiates human embryonic stem cell differentiation to trophoblast
-
DOI 10.1038/nbt761
-
Xu RH, Chen X, Li DS et al. BMP4 initiates human embryonic stem cell differentiation to trophoblast. Nat. Biotechnol. 20(12), 1261-1264 (2002). (Pubitemid 35462493)
-
(2002)
Nature Biotechnology
, vol.20
, Issue.12
, pp. 1261-1264
-
-
Xu, R.-H.1
Chen, X.2
Li, D.S.3
Li, R.4
Addicks, G.C.5
Glennon, C.6
Zwaka, T.P.7
Thomson, J.A.8
-
116
-
-
84856736593
-
Controlling the stem cell compartment and regeneration in vivo: The role of pluripotency pathways
-
Greenow K, Clarke AR. Controlling the stem cell compartment and regeneration in vivo: The role of pluripotency pathways. Physiol. Rev. 92(1), 75-99 (2012).
-
(2012)
Physiol. Rev.
, vol.92
, Issue.1
, pp. 75-99
-
-
Greenow, K.1
Clarke, A.R.2
-
117
-
-
54949105021
-
Promotion of reprogramming to ground state pluripotency by signal inhibition
-
Silva J, Barrandon O, Nichols J, Kawaguchi J, Theunissen TW, Smith A. Promotion of reprogramming to ground state pluripotency by signal inhibition. PLoS Biol. 6(10), e253 (2008).
-
(2008)
PLoS Biol
, vol.6
, Issue.10
-
-
Silva, J.1
Barrandon, O.2
Nichols, J.3
Kawaguchi, J.4
Theunissen, T.W.5
Smith, A.6
-
118
-
-
70350596825
-
Preview Inhibition of TGF-b signaling improves mouse fibroblast reprogramming
-
Woltjen K, Stanford WL. Preview. Inhibition of TGF-b signaling improves mouse fibroblast reprogramming. Cell Stem Cell 5(5), 457-458 (2009).
-
(2009)
Cell Stem Cell
, vol.5
, Issue.5
, pp. 457-458
-
-
Woltjen, K.1
Stanford, W.L.2
-
119
-
-
48149107133
-
Wnt signaling promotes reprogramming of somatic cells to pluripotency
-
Marson A, Foreman R, Chevalier B et al. Wnt signaling promotes reprogramming of somatic cells to pluripotency. Cell Stem Cell 3(2), 132-135 (2008).
-
(2008)
Cell Stem Cell
, vol.3
, Issue.2
, pp. 132-135
-
-
Marson, A.1
Foreman, R.2
Chevalier, B.3
-
120
-
-
77952956167
-
Decoding signalling networks by mass spectrometrybased proteomics
-
Choudhary C, Mann M. Decoding signalling networks by mass spectrometrybased proteomics. Nat. Rev. Mol. Cell Biol. 11(6), 427-439 (2010).
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, Issue.6
, pp. 427-439
-
-
Choudhary, C.1
Mann, M.2
-
121
-
-
78650466243
-
A tissue-specific atlas of mouse protein phosphorylation and expression
-
Huttlin EL, Jedrychowski MP, Elias JE et al. A tissue-specific atlas of mouse protein phosphorylation and expression. Cell 143(7), 1174-1189 (2010).
-
(2010)
Cell 143
, vol.7
, pp. 1174-1189
-
-
Huttlin, E.L.1
Jedrychowski, M.P.2
Elias, J.E.3
-
122
-
-
68949212379
-
Lysine acetylation targets protein complexes and co-regulates major cellular functions
-
Choudhary C, Kumar C, Gnad F et al. Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 325(5942), 834-840 (2009).
-
(2009)
Science
, vol.325
, Issue.5942
, pp. 834-840
-
-
Choudhary, C.1
Kumar, C.2
Gnad, F.3
-
123
-
-
78651225388
-
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
-
Xu G, Paige JS, Jaffrey SR. Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. Nat. Biotech. 28(8), 868-873 (2010).
-
(2010)
Nat. Biotech.
, vol.28
, Issue.8
, pp. 868-873
-
-
Xu, G.1
Paige, J.S.2
Jaffrey, S.R.3
-
124
-
-
77953240454
-
Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints
-
Zielinska DF, Gnad F, Wisniewski JR, Mann M. Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints. Cell 141(5), 897-907 (2010).
-
(2010)
Cell
, vol.141
, Issue.5
, pp. 897-907
-
-
Zielinska, D.F.1
Gnad, F.2
Wisniewski, J.R.3
Mann, M.4
-
125
-
-
67650095196
-
Elite and stochastic models for induced pluripotent stem cell generation
-
Yamanaka S. Elite and stochastic models for induced pluripotent stem cell generation. Nature 460(7251), 49-52 (2009).
-
(2009)
Nature
, vol.460
, Issue.7251
, pp. 49-52
-
-
Yamanaka, S.1
-
126
-
-
49449096588
-
A drug-inducible transgenic system for direct reprogramming of multiple somatic cell types
-
Wernig M, Lengner CJ, Hanna J et al. A drug-inducible transgenic system for direct reprogramming of multiple somatic cell types. Nat. Biotechnol. 26(8), 916-924 (2008).
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.8
, pp. 916-924
-
-
Wernig, M.1
Lengner, C.J.2
Hanna, J.3
-
127
-
-
59849092634
-
Transgenic mice with defined combinations of drug-inducible reprogramming factors
-
Markoulaki S, Hanna J, Beard C et al. Transgenic mice with defined combinations of drug-inducible reprogramming factors. Nat. Biotechnol. 27(2), 169-171 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.2
, pp. 169-171
-
-
Markoulaki, S.1
Hanna, J.2
Beard, C.3
-
128
-
-
77952474987
-
Cellular heterogeneity: Do differences make a difference
-
Altschuler SJ, Wu LF. Cellular heterogeneity: Do differences make a difference? Cell 141(4), 559-563 (2010).
-
(2010)
Cell
, vol.141
, Issue.4
, pp. 559-563
-
-
Altschuler, S.J.1
Wu, L.F.2
-
129
-
-
77249114260
-
Variability in gene expression underlies incomplete penetrance
-
Raj A, Rifkin SA, Andersen E, van Oudenaarden A. Variability in gene expression underlies incomplete penetrance. Nature 463(7283), 913-918 (2010).
-
(2010)
Nature
, vol.463
, Issue.7283
, pp. 913-918
-
-
Raj, A.1
Rifkin, S.A.2
Andersen, E.3
Van Oudenaarden, A.4
-
130
-
-
71449109765
-
Direct cell reprogramming is a stochastic process amenable to acceleration
-
Hanna J, Saha K, Pando B et al. Direct cell reprogramming is a stochastic process amenable to acceleration. Nature 462(7273), 595-601 (2009).
-
(2009)
Nature
, vol.462
, Issue.7273
, pp. 595-601
-
-
Hanna, J.1
Saha, K.2
Pando, B.3
-
131
-
-
84859631603
-
Trends in ultrasensitive proteomics
-
Altelaar AM, Heck AJ. Trends in ultrasensitive proteomics. Curr. Opin. Chem. Biol. 16(1-2), 206-213 (2012).
-
(2012)
Curr. Opin. Chem. Biol.
, vol.16
, Issue.1-2
, pp. 206-213
-
-
Altelaar, A.M.1
Heck, A.J.2
-
132
-
-
79961226080
-
Highly sensitive proteome analysis of FACS-sorted adult colon stem cells
-
Di Palma S, Stange D, van de Wetering M, Clevers H, Heck AJ, Mohammed S. Highly sensitive proteome analysis of FACS-sorted adult colon stem cells. J. Proteome Res. 10(8), 3814-3819 (2011).
-
(2011)
J. Proteome Res.
, vol.10
, Issue.8
, pp. 3814-3819
-
-
Di Palma, S.1
Stange, D.2
Van De Wetering, M.3
Clevers, H.4
Heck, A.J.5
Mohammed, S.6
-
133
-
-
33745813187
-
Reading protein modifications with interaction domains
-
DOI 10.1038/nrm1960, PII NRM1960
-
Seet BT, Dikic I, Zhou MM, Pawson T. Reading protein modifications with interaction domains. Nat. Rev. Mol. Cell Biol. 7(7), 473-483 (2006). (Pubitemid 44036453)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.7
, pp. 473-483
-
-
Seet, B.T.1
Dikic, I.2
Zhou, M.-M.3
Pawson, T.4
-
134
-
-
78651277061
-
The significance, development and progress of high-throughput combinatorial histone code analysis
-
Young NL, Dimaggio PA, Garcia BA. The significance, development and progress of high-throughput combinatorial histone code analysis. Cell. Mol. Life Sci. 67(23), 3983-4000 (2010).
-
(2010)
Cell. Mol. Life Sci.
, vol.67
, Issue.23
, pp. 3983-4000
-
-
Young, N.L.1
Dimaggio, P.A.2
Garcia, B.A.3
-
135
-
-
80052942443
-
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification
-
Tan M, Luo H, Lee S et al. Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell 146(6), 1016-1028 (2011).
-
(2011)
Cell
, vol.146
, Issue.6
, pp. 1016-1028
-
-
Tan, M.1
Luo, H.2
Lee, S.3
-
136
-
-
78650447665
-
β-N-acetylglucosamine (O-GlcNAc) is part of the histone code
-
Sakabe K, Wang Z, Hart GW. β-N-acetylglucosamine (O-GlcNAc) is part of the histone code. Proc. Natl Acad. Sci. USA 107(46), 19915-19920 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, Issue.46
, pp. 19915-19920
-
-
Sakabe, K.1
Wang, Z.2
Hart, G.W.3
-
137
-
-
33845435463
-
The utility of ETD mass spectrometry in proteomic analysis
-
DOI 10.1016/j.bbapap.2006.10.003, PII S1570963906003426, Posttranslational Modifications in Proteomics
-
Mikesh LM, Ueberheide B, Chi A et al. The utility of ETD mass spectrometry in proteomic analysis. Biochim. Biophys. Acta 1764(12), 1811-1822 (2006). (Pubitemid 44895029)
-
(2006)
Biochimica et Biophysica Acta - Proteins and Proteomics
, vol.1764
, Issue.12
, pp. 1811-1822
-
-
Mikesh, L.M.1
Ueberheide, B.2
Chi, A.3
Coon, J.J.4
Syka, J.E.P.5
Shabanowitz, J.6
Hunt, D.F.7
-
138
-
-
71049122240
-
High throughput characterization of combinatorial histone codes
-
Young NL, DiMaggio PA, Plazas-Mayorca MD, Baliban RC, Floudas CA, Garcia BA. High throughput characterization of combinatorial histone codes. Mol. Cell Proteomics 8(10), 2266-2284 (2009).
-
(2009)
Mol. Cell Proteomics
, vol.8
, Issue.10
, pp. 2266-2284
-
-
Young, N.L.1
DiMaggio, P.A.2
Plazas-Mayorca, M.D.3
Baliban, R.C.4
Floudas, C.A.5
Garcia, B.A.6
-
139
-
-
41949086475
-
Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells
-
DOI 10.1073/pnas.0710515105
-
Phanstiel D, Brumbaugh J, Berggren WT et al. Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells. Proc. Natl Acad. Sci. USA 105(11), 4093-4098 (2008). (Pubitemid 351754340)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.11
, pp. 4093-4098
-
-
Phanstiel, D.1
Brumbaugh, J.2
Berggren, W.T.3
Conard, K.4
Feng, X.5
Levenstein, M.E.6
McAlister, G.C.7
Thomson, J.A.8
Coon, J.J.9
-
140
-
-
78649424884
-
Twodimensional liquid chromatography system for online top-down mass spectrometry
-
Tian Z, Zhao R, Tolic N et al. Twodimensional liquid chromatography system for online top-down mass spectrometry. Proteomics 10(20), 3610-3620 (2010).
-
(2010)
Proteomics
, vol.10
, Issue.20
, pp. 3610-3620
-
-
Tian, Z.1
Zhao, R.2
Tolic, N.3
-
141
-
-
77956643239
-
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers
-
Vermeulen M, Eberl HC, Matarese F et al. Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell 142(6), 967-980 (2010).
-
(2010)
Cell 142
, vol.6
, Issue.967-980
-
-
Vermeulen, M.1
Eberl, H.C.2
Matarese, F.3
-
142
-
-
80053443628
-
A SILAC-based screen for Methyl CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein
-
Bartels SJ, Spruijt CG, Brinkman AB, Jansen PW, Vermeulen M, Stunnenberg HG. A SILAC-based screen for Methyl CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein. PLoS ONE 6(10), e25884 (2011).
-
(2011)
PLoS ONE
, vol.6
, Issue.10
-
-
Bartels, S.J.1
Spruijt, C.G.2
Brinkman, A.B.3
Jansen, P.W.4
Vermeulen, M.5
Stunnenberg, H.G.6
-
143
-
-
79953267538
-
A bioinformatic assay for pluripotency in human cells
-
Muller F-J, Schuldt BM, Williams R et al. A bioinformatic assay for pluripotency in human cells. Nat. Meth. 8(4), 315-317 (2011).
-
(2011)
Nat. Meth.
, vol.8
, Issue.4
, pp. 315-317
-
-
Muller, F.-J.1
Schuldt, B.M.2
Williams, R.3
-
144
-
-
68749094119
-
Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
-
Picotti P, Bodenmiller B, Mueller LN, Domon B, Aebersold R. Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 138(4), 795-806 (2009).
-
(2009)
Cell
, vol.138
, Issue.4
, pp. 795-806
-
-
Picotti, P.1
Bodenmiller, B.2
Mueller, L.N.3
Domon, B.4
Aebersold, R.5
-
145
-
-
80052447985
-
Improving SRM assay development: A global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra
-
de Graaf EL, Altelaar AF, van Breukelen B, Mohammed S, Heck AJ. Improving SRM assay development: A global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra. J. Proteome Res. 10(9), 4334-4341 (2011).
-
(2011)
J. Proteome Res.
, vol.10
, Issue.9
, pp. 4334-4341
-
-
De Graaf, E.L.1
Altelaar, A.F.2
Van Breukelen, B.3
Mohammed, S.4
Heck, A.J.5
-
146
-
-
75249097584
-
GATE: Software for the analysis and visualization of highdimensional time series expression data
-
MacArthur BD, Lachmann A, Lemischka IR, Ma'ayan A. GATE: Software for the analysis and visualization of highdimensional time series expression data. Bioinformatics 26(1), 143-144 (2010).
-
(2010)
Bioinformatics
, vol.26
, Issue.1
, pp. 143-144
-
-
MacArthur, B.D.1
Lachmann, A.2
Lemischka, I.R.3
Ma'ayan, A.4
-
147
-
-
84856471259
-
Quantitative data: Learning to share
-
Baker M. Quantitative data: Learning to share. Nat. Meth. 9(1), 39-41 (2012).
-
(2012)
Nat. Meth.
, vol.9
, Issue.1
, pp. 39-41
-
-
Baker, M.1
-
148
-
-
50549089957
-
Diseasespecific induced pluripotent stem cells
-
Park IH, Arora N, Huo H et al. Diseasespecific induced pluripotent stem cells. Cell 134(5), 877-886 (2008).
-
(2008)
Cell
, vol.134
, Issue.5
, pp. 877-886
-
-
Park, I.H.1
Arora, N.2
Huo, H.3
-
149
-
-
77956354416
-
Modeling inherited metabolic disorders of the liver using human induced pluripotent stem cells
-
Rashid ST, Corbineau S, Hannan N et al. Modeling inherited metabolic disorders of the liver using human induced pluripotent stem cells. J. Clin. Invest. 120(9), 3127-3136 (2010).
-
(2010)
J. Clin. Invest.
, vol.120
, Issue.9
, pp. 3127-3136
-
-
Rashid, S.T.1
Corbineau, S.2
Hannan, N.3
-
150
-
-
80053604531
-
Anti-Aβ drug screening platform using human iPS cell-derived neurons for the treatment of Alzheimer's disease
-
Yahata N, Asai M, Kitaoka S et al. Anti-Aβ drug screening platform using human iPS cell-derived neurons for the treatment of Alzheimer's disease. PLoS ONE 6(9), e25788 (2011).
-
(2011)
PLoS ONE
, vol.6
, Issue.9
-
-
Yahata, N.1
Asai, M.2
Kitaoka, S.3
-
151
-
-
84856392676
-
Mass spectrometry-based proteomics in preclinical drug discovery
-
Schirle M, Bantscheff M, Kuster B. Mass spectrometry-based proteomics in preclinical drug discovery. Chem. Biol. 19(1), 72-84 (2012).
-
(2012)
Chem. Biol.
, vol.19
, Issue.1
, pp. 72-84
-
-
Schirle, M.1
Bantscheff, M.2
Kuster, B.3
-
152
-
-
55349095003
-
Protein quantitation through targeted mass spectrometry: The way out of biomarker purgatory?
-
Carr SA, Anderson L. Protein quantitation through targeted mass spectrometry: The way out of biomarker purgatory? Clin. Chem. 54(11), 1749-1752 (2008).
-
(2008)
Clin. Chem.
, vol.54
, Issue.11
, pp. 1749-1752
-
-
Carr, S.A.1
Anderson, L.2
-
153
-
-
70349445082
-
Transcriptional signature and memory retention of human-induced pluripotent stem cells
-
Marchetto MC, Yeo GW, Kainohana O, Marsala M, Gage FH, Muotri AR. Transcriptional signature and memory retention of human-induced pluripotent stem cells. PLoS One 4(9), e7076 (2009).
-
(2009)
PLoS One
, vol.4
, Issue.9
-
-
Marchetto, M.C.1
Yeo, G.W.2
Kainohana, O.3
Marsala, M.4
Gage, F.H.5
Muotri, A.R.6
-
154
-
-
77957325592
-
Persistent donor cell gene expression among human induced pluripotent stem cells contributes to differences with human embryonic stem cells
-
Ghosh Z, Wilson KD, Wu Y, Hu S, Quertermous T, Wu JC. Persistent donor cell gene expression among human induced pluripotent stem cells contributes to differences with human embryonic stem cells. PLoS One 5(2), e8975 (2010).
-
(2010)
PLoS One
, vol.5
, Issue.2
-
-
Ghosh, Z.1
Wilson, K.D.2
Wu, Y.3
Hu, S.4
Quertermous, T.5
Wu, J.C.6
-
155
-
-
77952425747
-
Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells
-
Stadtfeld M, Apostolou E, Akutsu H et al. Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells. Nature 465(7295), 175-181 (2010).
-
(2010)
Nature
, vol.465
, Issue.7295
, pp. 175-181
-
-
Stadtfeld, M.1
Apostolou, E.2
Akutsu, H.3
-
156
-
-
77957334627
-
Identification and classification of chromosomal aberrations in human induced pluripotent stem cells
-
Mayshar Y, Ben-David U, Lavon N et al. Identification and classification of chromosomal aberrations in human induced pluripotent stem cells. Cell Stem Cell 7(4), 521-531 (2010).
-
(2010)
Cell Stem Cell
, vol.7
, Issue.4
, pp. 521-531
-
-
Mayshar, Y.1
Ben-David, U.2
Lavon, N.3
-
157
-
-
78649644924
-
MicroRNA profiling reveals two distinct p53-related human pluripotent stem cell states
-
Neveu P, Kye MJ, Qi S, Buchholz DE et al. MicroRNA profiling reveals two distinct p53-related human pluripotent stem cell states. Cell Stem Cell 7(6), 671-681 (2010).
-
(2010)
Cell Stem Cell
, vol.7
, Issue.6
, pp. 671-681
-
-
Neveu, P.1
Kye, M.J.2
Qi, S.3
Buchholz, D.E.4
-
158
-
-
77958616286
-
Defining hypo-methylated regions of stem cell-specific promoters in human iPS cells derived from extra-embryonic amnions and lung fibroblasts
-
Nishino K, Toyoda M, Yamazaki-Inoue M et al. Defining hypo-methylated regions of stem cell-specific promoters in human iPS cells derived from extra-embryonic amnions and lung fibroblasts. PLoS One 5(9), e13017 (2010).
-
(2010)
PLoS One
, vol.5
, Issue.9
-
-
Nishino, K.1
Toyoda, M.2
Yamazaki-Inoue, M.3
|