메뉴 건너뛰기




Volumn 8, Issue 1, 2011, Pages 29-42

Defining pluripotent stem cells through quantitative proteomic analysis

Author keywords

cell surface marker; chromatin dynamics; differentiation; embryonic stem cell; induced pluripotent stem cell; mass spectrometry; phosphoproteome; post translational modifications; protein quantification; proteomics; regenerative medicine

Indexed keywords

CELL PROTEIN; HISTONE; LEUKEMIA INHIBITORY FACTOR; PHOSPHOPROTEOME; PROTEOME; STAT3 PROTEIN; TRANSFORMING GROWTH FACTOR BETA; UNCLASSIFIED DRUG;

EID: 79951893034     PISSN: 14789450     EISSN: 17448387     Source Type: Journal    
DOI: 10.1586/epr.10.100     Document Type: Review
Times cited : (26)

References (155)
  • 1
    • 0019826665 scopus 로고
    • Establishment in culture of pluripotential cells from mouse embryos
    • DOI 10.1038/292154a0
    • Evans MJ, Kaufman MH. Establishment in culture of pluripotential cells from mouse (Pubitemid 11050741)
    • (1981) Nature , vol.292 , Issue.5819 , pp. 154-156
    • Evans, M.J.1    Kaufman, M.H.2
  • 2
    • 0001007610 scopus 로고
    • Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells
    • Martin GR. Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. Proc. Natl Acad. Sci. USA 78(12), 7634-7638 (1981). (Pubitemid 12186197)
    • (1981) Proceedings of the National Academy of Sciences of the United States of America , vol.78 , Issue.12 , pp. 7634-7638
    • Martin, G.R.1
  • 3
    • 0032491416 scopus 로고    scopus 로고
    • Embryonic stem cell lines derived from human blastocysts
    • Thomson JA, Itskovitz-Eldor J, Shapiro SS et al. Embryonic stem cell lines derived from human blastocysts. Science 282(5391), 1145-1147 (1998). (Pubitemid 28516247)
    • (1998) Science , vol.282 , Issue.5391 , pp. 1145-1147
    • Thomson, J.A.1
  • 4
    • 48749109823 scopus 로고    scopus 로고
    • Pluripotent stem cell lines
    • Yu J, Thomson JA. Pluripotent stem cell lines. Genes Dev. 22(15), 1987-1997 (2008).
    • (2008) Genes Dev. , vol.22 , Issue.15 , pp. 1987-1997
    • Yu, J.1    Thomson, J.A.2
  • 5
    • 77953365784 scopus 로고    scopus 로고
    • Extrinsic regulation of pluripotent stem cells
    • Pera MF, Tam PP. Extrinsic regulation of pluripotent stem cells. Nature 465(7299), 713-720 (2010).
    • (2010) Nature , vol.465 , Issue.7299 , pp. 713-720
    • Pera, M.F.1    Tam, P.P.2
  • 6
    • 39149130361 scopus 로고    scopus 로고
    • Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming
    • DOI 10.1016/j.cell.2008.01.015, PII S0092867408001153
    • Jaenisch R, Young R. Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming. Cell 132(4), 567-582 (2008). (Pubitemid 351253686)
    • (2008) Cell , vol.132 , Issue.4 , pp. 567-582
    • Jaenisch, R.1    Young, R.2
  • 9
    • 30544453798 scopus 로고    scopus 로고
    • Embryonic and extraembryonic stem cell lines derived from single mouse blastomeres
    • DOI 10.1038/nature04277, PII NATURE04277
    • Chung Y, Klimanskaya I, Becker S et al. Embryonic and extraembryonic stem cell lines derived from single mouse blastomeres. Nature 439(7073), 216-219 (2006). (Pubitemid 43083144)
    • (2006) Nature , vol.439 , Issue.7073 , pp. 216-219
    • Chung, Y.1    Klimanskaya, I.2    Becker, S.3    Marh, J.4    Lu, S.-J.5    Johnson, J.6    Meisner, L.7    Lanza, R.8
  • 14
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • DOI 10.1016/j.cell.2006.07.024, PII S0092867406009767
    • Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126(4), 663-676 (2006). (Pubitemid 44233629)
    • (2006) Cell , vol.126 , Issue.4 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 15
    • 35148845584 scopus 로고    scopus 로고
    • Direct reprogramming of genetically unmodified fibroblasts into pluripotent stem cells
    • DOI 10.1038/nbt1335, PII NBT1335
    • Meissner A, Wernig M, Jaenisch R. Direct reprogramming of genetically unmodified fibroblasts into pluripotent stem cells. Nat. Biotechnol. 25(10), 1177-1181 (2007). (Pubitemid 47538112)
    • (2007) Nature Biotechnology , vol.25 , Issue.10 , pp. 1177-1181
    • Meissner, A.1    Wernig, M.2    Jaenisch, R.3
  • 16
    • 34249880066 scopus 로고    scopus 로고
    • Generation of germline-competent induced pluripotent stem cells
    • DOI 10.1038/nature05934, PII NATURE05934
    • Okita K, Ichisaka T, Yamanaka S. Generation of germline-competent induced pluripotent stem cells. Nature 448(7151), 313-317 (2007). (Pubitemid 47080336)
    • (2007) Nature , vol.448 , Issue.7151 , pp. 313-317
    • Okita, K.1    Ichisaka, T.2    Yamanaka, S.3
  • 17
    • 38049028459 scopus 로고    scopus 로고
    • Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts
    • Nakagawa M, Koyanagi M, Tanabe K et al. Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts. Nat. Biotechnol. 26(1), 101-106 (2008).
    • (2008) Nat. Biotechnol. , vol.26 , Issue.1 , pp. 101-106
    • Nakagawa, M.1    Koyanagi, M.2    Tanabe, K.3
  • 18
    • 34249909232 scopus 로고    scopus 로고
    • Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution
    • Maherali N, Sridharan R, Xie W et al. Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution. Cell Stem Cell 1(1), 55-70 (2007).
    • (2007) Cell Stem Cell , vol.1 , Issue.1 , pp. 55-70
    • Maherali, N.1    Sridharan, R.2    Xie, W.3
  • 19
    • 36248966518 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from adult human fibroblasts by defined factors
    • DOI 10.1016/j.cell.2007.11.019, PII S0092867407014717
    • Takahashi K, Tanabe K, Ohnuki M et al. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131(5), 861-872 (2007). (Pubitemid 350138099)
    • (2007) Cell , vol.131 , Issue.5 , pp. 861-872
    • Takahashi, K.1    Tanabe, K.2    Ohnuki, M.3    Narita, M.4    Ichisaka, T.5    Tomoda, K.6    Yamanaka, S.7
  • 20
    • 38049187707 scopus 로고    scopus 로고
    • Reprogramming of human somatic cells to pluripotency with defined factors
    • Park IH, Zhao R, West JA et al. Reprogramming of human somatic cells to pluripotency with defined factors. Nature 451(7175), 141-146 (2008).
    • (2008) Nature , vol.451 , Issue.7175 , pp. 141-146
    • Park, I.H.1    Zhao, R.2    West, J.A.3
  • 22
    • 36749043230 scopus 로고    scopus 로고
    • Induced pluripotent stem cell lines derived from human somatic cells
    • Yu JY, Vodyanik MA, Smuga-Otto K et al. Induced pluripotent stem cell lines derived from human somatic cells. Science 318(5858), 1917-1920 (2007).
    • (2007) Science , vol.318 , Issue.5858 , pp. 1917-1920
    • Yu, J.Y.1    Vodyanik, M.A.2    Smuga-Otto, K.3
  • 23
    • 61849086230 scopus 로고    scopus 로고
    • Generation of iPS cells using defined factors linked via the self-cleaving 2A sequences in a single open reading frame
    • Shao L, Feng W, Sun Y et al. Generation of iPS cells using defined factors linked via the self-cleaving 2A sequences in a single open reading frame. Cell Res. 19(3), 296-306 (2009).
    • (2009) Cell Res. , vol.19 , Issue.3 , pp. 296-306
    • Shao, L.1    Feng, W.2    Sun, Y.3
  • 24
    • 58549096370 scopus 로고    scopus 로고
    • Reprogramming of murine and human somatic cells using a single polycistronic vector
    • Carey BW, Markoulaki S, Hanna J et al. Reprogramming of murine and human somatic cells using a single polycistronic vector. Proc. Natl Acad. Sci. USA 106(1), 157-162 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , Issue.1 , pp. 157-162
    • Carey, B.W.1    Markoulaki, S.2    Hanna, J.3
  • 26
    • 64749111225 scopus 로고    scopus 로고
    • Virus-free induction of pluripotency and subsequent excision of reprogramming factors
    • Kaji K, Norrby K, Paca A, Mileikovsky M, Mohseni P, Woltjen K. Virus-free induction of pluripotency and subsequent excision of reprogramming factors. Nature 458(7239), 771-775 (2009).
    • (2009) Nature , vol.458 , Issue.7239 , pp. 771-775
    • Kaji, K.1    Norrby, K.2    Paca, A.3    Mileikovsky, M.4    Mohseni, P.5    Woltjen, K.6
  • 27
    • 61349100729 scopus 로고    scopus 로고
    • Parkinsons disease patient-derived induced pluripotent stem cells free of viral reprogramming factors
    • Soldner F, Hockemeyer D, Beard C et al. Parkinsons disease patient-derived induced pluripotent stem cells free of viral reprogramming factors. Cell 136(5), 964-977 (2009).
    • (2009) Cell , vol.136 , Issue.5 , pp. 964-977
    • Soldner, F.1    Hockemeyer, D.2    Beard, C.3
  • 28
    • 64749083939 scopus 로고    scopus 로고
    • PiggyBac transposition reprograms fibroblasts to induced pluripotent stem cells
    • Woltjen K, Michael IP, Mohseni P et al. piggyBac transposition reprograms fibroblasts to induced pluripotent stem cells. Nature 458(7239), 766-770 (2009).
    • (2009) Nature , vol.458 , Issue.7239 , pp. 766-770
    • Woltjen, K.1    Michael, I.P.2    Mohseni, P.3
  • 29
    • 65449154892 scopus 로고    scopus 로고
    • Generation of transgene-free induced pluripotent mouse stem cells by the piggyBac transposon
    • Yusa K, Rad R, Takeda J, Bradley A. Generation of transgene-free induced pluripotent mouse stem cells by the piggyBac transposon. Nat. Methods 6(5), 363-369 (2009).
    • (2009) Nat. Methods , vol.6 , Issue.5 , pp. 363-369
    • Yusa, K.1    Rad, R.2    Takeda, J.3    Bradley, A.4
  • 30
    • 55849115999 scopus 로고    scopus 로고
    • Induced pluripotent stem cells generated without viral integration
    • Stadtfeld M, Nagaya M, Utikal J, Weir G, Hochedlinger K. Induced pluripotent stem cells generated without viral integration. Science 322(5903), 945-949 (2008).
    • (2008) Science , vol.322 , Issue.5903 , pp. 945-949
    • Stadtfeld, M.1    Nagaya, M.2    Utikal, J.3    Weir, G.4    Hochedlinger, K.5
  • 31
    • 55849117368 scopus 로고    scopus 로고
    • Generation of mouse induced pluripotent stem cells without viral vectors
    • Okita K, Nakagawa M, Hong HJ, Ichisaka T, Yamanaka S. Generation of mouse induced pluripotent stem cells without viral vectors. Science 322(5903), 949-953 (2008).
    • (2008) Science , vol.322 , Issue.5903 , pp. 949-953
    • Okita, K.1    Nakagawa, M.2    Hong, H.J.3    Ichisaka, T.4    Yamanaka, S.5
  • 32
    • 67049155513 scopus 로고    scopus 로고
    • Generation of mouse-induced pluripotent stem cells by transient expression of a single nonviral polycistronic vector
    • Gonzalez F, Barragan Monasterio M, Tiscornia G et al. Generation of mouse-induced pluripotent stem cells by transient expression of a single nonviral polycistronic vector. Proc. Natl Acad. Sci. USA 106(22), 8918-8922 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , Issue.22 , pp. 8918-8922
    • Gonzalez, F.1    Barragan Monasterio, M.2    Tiscornia, G.3
  • 33
    • 65649116572 scopus 로고    scopus 로고
    • Human induced pluripotent stem cells free of vector and transgene sequences
    • Yu J, Hu K, Smuga-Otto K et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324(5928), 797-801 (2009).
    • (2009) Science , vol.324 , Issue.5928 , pp. 797-801
    • Yu, J.1    Hu, K.2    Smuga-Otto, K.3
  • 34
    • 66049135249 scopus 로고    scopus 로고
    • Generation of induced pluripotent stem cells using recombinant proteins
    • Zhou HY, Wu SL, Joo JY et al. Generation of induced pluripotent stem cells using recombinant proteins. Cell Stem Cell 4(5), 381-384 (2009).
    • (2009) Cell Stem Cell , vol.4 , Issue.5 , pp. 381-384
    • Zhou, H.Y.1    Wu, S.L.2    Joo, J.Y.3
  • 35
    • 66049143859 scopus 로고    scopus 로고
    • Generation of human induced pluripotent stem cells by direct delivery of reprogramming proteins
    • Kim D, Kim CH, Moon JI et al. Generation of human induced pluripotent stem cells by direct delivery of reprogramming proteins. Cell Stem Cell 4(6), 472-476 (2009).
    • (2009) Cell Stem Cell , vol.4 , Issue.6 , pp. 472-476
    • Kim, D.1    Kim, C.H.2    Moon, J.I.3
  • 36
    • 69949089630 scopus 로고    scopus 로고
    • IPS cells produce viable mice through tetraploid complementation
    • Zhao X, Li W, Lv Z et al. iPS cells produce viable mice through tetraploid complementation. Nature 461(7260), 86-90 (2009).
    • (2009) Nature , vol.461 , Issue.7260 , pp. 86-90
    • Zhao, X.1    Li, W.2    Lv, Z.3
  • 37
    • 56549127713 scopus 로고    scopus 로고
    • Guidelines and techniques for the generation of induced pluripotent stem cells
    • Maherali N, Hochedlinger K. Guidelines and techniques for the generation of induced pluripotent stem cells. Cell Stem Cell 3(6), 595-605 (2008).
    • (2008) Cell Stem Cell , vol.3 , Issue.6 , pp. 595-605
    • Maherali, N.1    Hochedlinger, K.2
  • 38
    • 70449625611 scopus 로고    scopus 로고
    • New strategies to generate induced pluripotent stem cells
    • OMalley J, Woltjen K, Kaji K. New strategies to generate induced pluripotent stem cells. Curr. Opin. Biotechnol. 20(5), 516-521 (2009).
    • (2009) Curr. Opin. Biotechnol. , vol.20 , Issue.5 , pp. 516-521
    • Omalley, J.1    Woltjen, K.2    Kaji, K.3
  • 39
    • 73849115031 scopus 로고    scopus 로고
    • Determinants of pluripotency: From avian, rodents, to primates
    • Martins-Taylor K, Xu RH. Determinants of pluripotency: from avian, rodents, to primates. J. Cell Biochem. 109(1), 16-25 (2010).
    • (2010) J. Cell Biochem. , vol.109 , Issue.1 , pp. 16-25
    • Martins-Taylor, K.1    Xu, R.H.2
  • 40
    • 77949656710 scopus 로고    scopus 로고
    • Switching cell fate: The remarkable rise of induced pluripotent stem cells and lineage reprogramming technologies
    • Selvaraj V, Plane JM, Williams AJ, Deng WB. Switching cell fate: the remarkable rise of induced pluripotent stem cells and lineage reprogramming technologies. Trends Biotechnol. 28(4), 214-223 (2010).
    • (2010) Trends Biotechnol. , vol.28 , Issue.4 , pp. 214-223
    • Selvaraj, V.1    Plane, J.M.2    Williams, A.J.3    Deng, W.B.4
  • 41
    • 41949134533 scopus 로고    scopus 로고
    • Generation of pluripotent stem cells from adult mouse liver and stomach cells
    • Aoi T, Yae K, Nakagawa M et al. Generation of pluripotent stem cells from adult mouse liver and stomach cells. Science 321(5889), 699-702 (2008).
    • (2008) Science , vol.321 , Issue.5889 , pp. 699-702
    • Aoi, T.1    Yae, K.2    Nakagawa, M.3
  • 42
    • 68249087053 scopus 로고    scopus 로고
    • Variation in the safety of induced pluripotent stem cell lines
    • Miura K, Okada Y, Aoi T et al. Variation in the safety of induced pluripotent stem cell lines. Nat. Biotechnol. 27(8), 743-745 (2009).
    • (2009) Nat. Biotechnol. , vol.27 , Issue.8 , pp. 743-745
    • Miura, K.1    Okada, Y.2    Aoi, T.3
  • 43
    • 77955449906 scopus 로고    scopus 로고
    • Epigenetic memory in induced pluripotent stem cells
    • Kim K, Doi A, Wen B et al. Epigenetic memory in induced pluripotent stem cells. Nature 467(7313), 285-290 (2010).
    • (2010) Nature , vol.467 , Issue.7313 , pp. 285-290
    • Kim, K.1    Doi, A.2    Wen, B.3
  • 44
    • 78650752402 scopus 로고    scopus 로고
    • Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells
    • Polo JM, Liu S, Figueroa ME et al. Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells. Nat. Biotechnol. 28(8), 848-855 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , Issue.8 , pp. 848-855
    • Polo, J.M.1    Liu, S.2    Figueroa, M.E.3
  • 45
    • 70449344685 scopus 로고    scopus 로고
    • Live cell imaging distinguishes bona fide human iPS cells from partially reprogrammed cells
    • Chan EM, Ratanasirintrawoot S, Park IH et al. Live cell imaging distinguishes bona fide human iPS cells from partially reprogrammed cells. Nat. Biotechnol. 27(11), 1033-1037 (2009).
    • (2009) Nat. Biotechnol. , vol.27 , Issue.11 , pp. 1033-1037
    • Chan, E.M.1    Ratanasirintrawoot, S.2    Park, I.H.3
  • 46
    • 61749094336 scopus 로고    scopus 로고
    • Adipogenic differentiation of human induced pluripotent stem cells: Comparison with that of human embryonic stem cells
    • Taura D, Noguchi M, Sone M et al. Adipogenic differentiation of human induced pluripotent stem cells: comparison with that of human embryonic stem cells. FEBS Lett. 583(6), 1029-1033 (2009).
    • (2009) FEBS Lett. , vol.583 , Issue.6 , pp. 1029-1033
    • Taura, D.1    Noguchi, M.2    Sone, M.3
  • 47
    • 77950995392 scopus 로고    scopus 로고
    • Hemangioblastic derivatives from human induced pluripotent stem cells exhibit limited expansion and early senescence
    • Feng Q, Lu SJ, Klimanskaya I et al. Hemangioblastic derivatives from human induced pluripotent stem cells exhibit limited expansion and early senescence. Stem Cells 28(4), 704-712 (2010).
    • (2010) Stem Cells , vol.28 , Issue.4 , pp. 704-712
    • Feng, Q.1    Lu, S.J.2    Klimanskaya, I.3
  • 48
    • 70349445082 scopus 로고    scopus 로고
    • Transcriptional signature and memory retention of human-induced pluripotent stem cells
    • Marchetto MCN, Yeo GW, Kainohana O, Marsala M, Gage FH, Muotri AR. Transcriptional signature and memory retention of human-induced pluripotent stem cells. Plos One 4(9), e7076 (2009).
    • (2009) Plos One , vol.4 , Issue.9
    • McN, M.1    Yeo, G.W.2    Kainohana, O.3    Marsala, M.4    Gage, F.H.5    Muotri, A.R.6
  • 49
    • 67649222358 scopus 로고    scopus 로고
    • Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures
    • Chin MH, Mason MJ, Xie W et al. Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell 5(1), 111-123 (2009).
    • (2009) Cell Stem Cell , vol.5 , Issue.1 , pp. 111-123
    • Chin, M.H.1    Mason, M.J.2    Xie, W.3
  • 50
    • 77952425747 scopus 로고    scopus 로고
    • Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells
    • Stadtfeld M, Apostolou E, Akutsu H et al. Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells. Nature 465(7295), 175-181 (2010).
    • (2010) Nature , vol.465 , Issue.7295 , pp. 175-181
    • Stadtfeld, M.1    Apostolou, E.2    Akutsu, H.3
  • 51
    • 77956260872 scopus 로고    scopus 로고
    • Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells
    • Guenther MG, Frampton GM, Soldner F et al. Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells. Cell Stem Cell. 7(2), 249-257 (2010).
    • (2010) Cell Stem Cell. , vol.7 , Issue.2 , pp. 249-257
    • Guenther, M.G.1    Frampton, G.M.2    Soldner, F.3
  • 52
    • 57449099068 scopus 로고    scopus 로고
    • Precision proteomics: The case for high resolution and high mass accuracy
    • Mann M, Kelleher NL. Precision proteomics: the case for high resolution and high mass accuracy. Proc. Natl Acad. Sci. USA 105(47), 18132-18138 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , Issue.47 , pp. 18132-18138
    • Mann, M.1    Kelleher, N.L.2
  • 53
    • 68749094119 scopus 로고    scopus 로고
    • Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
    • Picotti P, Bodenmiller B, Mueller LN, Domon B, Aebersold R. Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 138(4), 795-806 (2009).
    • (2009) Cell , vol.138 , Issue.4 , pp. 795-806
    • Picotti, P.1    Bodenmiller, B.2    Mueller, L.N.3    Domon, B.4    Aebersold, R.5
  • 54
    • 55249096894 scopus 로고    scopus 로고
    • Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    • de Godoy LM, Olsen JV, Cox J et al. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 455(7217), 1251-1254 (2008).
    • (2008) Nature , vol.455 , Issue.7217 , pp. 1251-1254
    • De Godoy, L.M.1    Olsen, J.V.2    Cox, J.3
  • 55
    • 54749158155 scopus 로고    scopus 로고
    • Multidimensional LC separations in shotgun proteomics
    • Motoyama A, Yates JR 3rd. Multidimensional LC separations in shotgun proteomics. Anal. Chem. 80(19), 7187-7193 (2008).
    • (2008) Anal. Chem. , vol.80 , Issue.19 , pp. 7187-7193
    • Motoyama, A.1    Yates III, J.R.2
  • 56
    • 33644524918 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics turns quantitative
    • Ong SE, Mann M. Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 1(5), 252-262 (2005).
    • (2005) Nat. Chem. Biol. , vol.1 , Issue.5 , pp. 252-262
    • Ong, S.E.1    Mann, M.2
  • 57
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • DOI 10.1038/13690
    • Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17(10), 994-999 (1999). (Pubitemid 29474856)
    • (1999) Nature Biotechnology , vol.17 , Issue.10 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 59
  • 61
    • 33845329203 scopus 로고    scopus 로고
    • Functional and quantitative proteomics using SILAC
    • DOI 10.1038/nrm2067, PII NRM2067
    • Mann M. Functional and quantitative proteomics using SILAC. Nat. Rev. Mol. Cell Biol. 7(12), 952-958 (2006). (Pubitemid 44871421)
    • (2006) Nature Reviews Molecular Cell Biology , vol.7 , Issue.12 , pp. 952-958
    • Mann, M.1
  • 64
    • 42649132889 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins
    • DOI 10.1074/mcp.M700460-MCP200
    • Graumann J, Hubner NC, Kim JB et al. Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Mol. Cell Proteomics 7(4), 672-683 (2008). (Pubitemid 351597479)
    • (2008) Molecular and Cellular Proteomics , vol.7 , Issue.4 , pp. 672-683
    • Graumann, J.1    Hubner, N.C.2    Kim, J.B.3    Ko, K.4    Moser, M.5    Kumar, C.6    Cox, J.7    Scholer, H.8    Mann, M.9
  • 65
    • 34548356772 scopus 로고    scopus 로고
    • An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics [1]
    • DOI 10.1038/nmeth0907-677, PII NMETH0907-677
    • Van Hoof D, Pinkse MW, Oostwaard DW, Mummery CL, Heck AJ, Krijgsveld J. An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics. Nat. Methods 4(9), 677-678 (2007). (Pubitemid 47338150)
    • (2007) Nature Methods , vol.4 , Issue.9 , pp. 677-678
    • Van Hoof, D.1    Pinkse, M.W.H.2    Oostwaard, D.W.-V.3    Mummery, C.L.4    Heck, A.J.R.5    Krijgsveld, J.6
  • 66
    • 67449107495 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells
    • Prokhorova TA, Rigbolt KT, Johansen PT et al. Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells. Mol. Cell Proteomics 8(5), 959-970 (2009).
    • (2009) Mol. Cell Proteomics , vol.8 , Issue.5 , pp. 959-970
    • Prokhorova, T.A.1    Rigbolt, K.T.2    Johansen, P.T.3
  • 68
    • 77952956167 scopus 로고    scopus 로고
    • Decoding signalling networks by mass spectrometry-based proteomics
    • Choudhary C, Mann M. Decoding signalling networks by mass spectrometry-based proteomics. Nat. Rev. Mol. Cell Biol. 11(6), 427-439 (2010).
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , Issue.6 , pp. 427-439
    • Choudhary, C.1    Mann, M.2
  • 69
    • 77958016155 scopus 로고    scopus 로고
    • Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal
    • OBrien RN, Shen Z, Tachikawa K, Lee PJ, Briggs SP. Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal. Mol. Cell Proteomics 9(10), 2238-2251 (2010).
    • (2010) Mol. Cell Proteomics , vol.9 , Issue.10 , pp. 2238-2251
    • Obrien, R.N.1    Shen, Z.2    Tachikawa, K.3    Lee, P.J.4    Briggs, S.P.5
  • 71
    • 70350449478 scopus 로고    scopus 로고
    • Comparative proteome and transcriptome analyses of embryonic stem cells during embryoid body-based differentiation
    • Fathi A, Pakzad M, Taei A et al. Comparative proteome and transcriptome analyses of embryonic stem cells during embryoid body-based differentiation. Proteomics 9(21), 4859-4870 (2009).
    • (2009) Proteomics , vol.9 , Issue.21 , pp. 4859-4870
    • Fathi, A.1    Pakzad, M.2    Taei, A.3
  • 72
    • 70450160004 scopus 로고    scopus 로고
    • Systems-level dynamic analyses of fate change in murine embryonic stem cells
    • Lu R, Markowetz F, Unwin RD et al. Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 462(7271), 358-362 (2009).
    • (2009) Nature , vol.462 , Issue.7271 , pp. 358-362
    • Lu, R.1    Markowetz, F.2    Unwin, R.D.3
  • 73
    • 42649126705 scopus 로고    scopus 로고
    • A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation
    • DOI 10.1016/j.stem.2008.03.013, PII S1934590908001276
    • Sampath P, Pritchard DK, Pabon L et al. A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation. Cell Stem Cell 2(5), 448-460 (2008). (Pubitemid 351598082)
    • (2008) Cell Stem Cell , vol.2 , Issue.5 , pp. 448-460
    • Sampath, P.1    Pritchard, D.K.2    Pabon, L.3    Reinecke, H.4    Schwartz, S.M.5    Morris, D.R.6    Murry, C.E.7
  • 75
    • 65249184400 scopus 로고    scopus 로고
    • Proteomic analysis of monkey embryonic stem cell during differentiation
    • Nasrabadi D, Rezaei Larijani M, Pirhaji L et al. Proteomic analysis of monkey embryonic stem cell during differentiation. J. Proteome Res. 8(3), 1527-1539 (2009).
    • (2009) J. Proteome Res. , vol.8 , Issue.3 , pp. 1527-1539
    • Nasrabadi, D.1    Rezaei Larijani, M.2    Pirhaji, L.3
  • 76
    • 6344240952 scopus 로고    scopus 로고
    • Proteomic signatures and aberrations of mouse embryonic stem cells containing a single human chromosome 21 in neuronal differentiation: An in vitro model of down syndrome
    • DOI 10.1016/j.neuroscience.2004.06.081, PII S0306452204006633
    • Kadota M, Nishigaki R, Wang CC et al. Proteomic signatures and aberrations of mouse embryonic stem cells containing a single human chromosome 21 in neuronal differentiation: an in vitro model of Down syndrome. NeuroScience 129(2), 325-335 (2004). (Pubitemid 39388852)
    • (2004) Neuroscience , vol.129 , Issue.2 , pp. 325-335
    • Kadota, M.1    Nishigaki, R.2    Wang, C.C.3    Toda, T.4    Shirayoshi, Y.5    Inoue, T.6    Gojobori, T.7    Ikeo, K.8    Rogers, M.S.9    Oshimura, M.10
  • 77
    • 0034855451 scopus 로고    scopus 로고
    • Proteomic characterization of early-stage differentiation of mouse embryonic stem cells into neural cells induced by all-trans retinoic acid in vitro
    • Guo X, Ying W, Wan J et al. Proteomic characterization of early-stage differentiation of mouse embryonic stem cells into neural cells induced by all-trans retinoic acid in vitro. Electrophoresis 22(14), 3067-3075 (2001).
    • (2001) Electrophoresis , vol.22 , Issue.14 , pp. 3067-3075
    • Guo, X.1    Ying, W.2    Wan, J.3
  • 79
    • 59349093511 scopus 로고    scopus 로고
    • Reptin52 expression during in vitro neural differentiation of human embryonic stem cells
    • Barthéléry M, Jaishankar A, Salli U, Vrana KE. Reptin52 expression during in vitro neural differentiation of human embryonic stem cells. Neurosci. Lett. 452(1), 47-51 (2009).
    • (2009) Neurosci. Lett. , vol.452 , Issue.1 , pp. 47-51
    • Barthéléry, M.1    Jaishankar, A.2    Salli, U.3    Vrana, K.E.4
  • 80
    • 77949304086 scopus 로고    scopus 로고
    • Nuclear proteome analysis of monkey embryonic stem cells during differentiation
    • Nasrabadi D, Larijani MR, Fathi A et al. Nuclear proteome analysis of monkey embryonic stem cells during differentiation. Stem Cell Rev. 6(1), 50-61 (2010).
    • (2010) Stem Cell Rev. , vol.6 , Issue.1 , pp. 50-61
    • Nasrabadi, D.1    Larijani, M.R.2    Fathi, A.3
  • 83
    • 65249167537 scopus 로고    scopus 로고
    • Temporal analysis of neural differentiation using quantitative proteomics
    • Chaerkady R, Kerr CL, Marimuthu A et al. Temporal analysis of neural differentiation using quantitative proteomics. J. Proteome Res. 8(3), 1315-1326 (2009).
    • (2009) J. Proteome Res. , vol.8 , Issue.3 , pp. 1315-1326
    • Chaerkady, R.1    Kerr, C.L.2    Marimuthu, A.3
  • 84
    • 33751092246 scopus 로고    scopus 로고
    • A protein interaction network for pluripotency of embryonic stem cells
    • DOI 10.1038/nature05284, PII NATURE05284
    • Wang J, Rao S, Chu J et al. A protein interaction network for pluripotency of embryonic stem cells. Nature 444(7117), 364-368 (2006). (Pubitemid 44764111)
    • (2006) Nature , vol.444 , Issue.7117 , pp. 364-368
    • Wang, J.1    Rao, S.2    Chu, J.3    Shen, X.4    Levasseur, D.N.5    Theunissen, T.W.6    Orkin, S.H.7
  • 85
    • 33847287408 scopus 로고    scopus 로고
    • Differences between human embryonic stem cell lines
    • DOI 10.1093/humupd/dml041
    • Allegrucci C, Young LE. Differences between human embryonic stem cell lines. Hum. Reprod. Update 13(2), 103-120 (2007). (Pubitemid 46323190)
    • (2007) Human Reproduction Update , vol.13 , Issue.2 , pp. 103-120
    • Allegrucci, C.1    Young, L.E.2
  • 86
    • 33645521820 scopus 로고    scopus 로고
    • Establishing standards for the characterization of human embryonic stem cell lines
    • Loring JF, Rao MS. Establishing standards for the characterization of human embryonic stem cell lines. Stem Cells 24(1), 145-150 (2006).
    • (2006) Stem Cells , vol.24 , Issue.1 , pp. 145-150
    • Loring, J.F.1    Rao, M.S.2
  • 89
    • 34547896274 scopus 로고    scopus 로고
    • Concise review: Trends in stem cell proteomics
    • DOI 10.1634/stemcells.2007-0107
    • Baharvand H, Fathi A, van Hoof D, Salekdeh GH. Concise review: trends in stem cell proteomics. Stem Cells 25(8), 1888-1903 (2007). (Pubitemid 47258167)
    • (2007) Stem Cells , vol.25 , Issue.8 , pp. 1888-1903
    • Baharvand, H.1    Fathi, A.2    Van Hoof, D.3    Salekdeh, G.H.4
  • 90
    • 0034983625 scopus 로고    scopus 로고
    • Multilineage differentiation from human embryonic stem cell lines
    • Odorico JS, Kaufman DS, Thomson JA. Multilineage differentiation from human embryonic stem cell lines. Stem Cells 19(3), 193-204 (2001). (Pubitemid 32524540)
    • (2001) Stem Cells , vol.19 , Issue.3 , pp. 193-204
    • Odorico, J.S.1    Kaufman, D.S.2    Thomson, J.A.3
  • 91
    • 84984933087 scopus 로고    scopus 로고
    • The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
    • Villen J, Gygi SP. The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry. Nat. Protoc. 3(10), 1630-1638 (2008).
    • (2008) Nat. Protoc. , vol.3 , Issue.10 , pp. 1630-1638
    • Villen, J.1    Gygi, S.P.2
  • 92
    • 63049113651 scopus 로고    scopus 로고
    • Analytical strategies for phosphoproteomics
    • Thingholm TE, Jensen ON, Larsen MR. Analytical strategies for phosphoproteomics. Proteomics 9(6), 1451-1468 (2009).
    • (2009) Proteomics , vol.9 , Issue.6 , pp. 1451-1468
    • Thingholm, T.E.1    Jensen, O.N.2    Larsen, M.R.3
  • 93
    • 4444371652 scopus 로고    scopus 로고
    • Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
    • DOI 10.1038/nbt1005
    • Blagoev B, Ong SE, Kratchmarova I, Mann M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat. Biotechnol. 22(9), 1139-1145 (2004). (Pubitemid 39166852)
    • (2004) Nature Biotechnology , vol.22 , Issue.9 , pp. 1139-1145
    • Blagoev, B.1    Ong, S.-E.2    Kratchmarova, I.3    Mann, M.4
  • 94
    • 26844576371 scopus 로고    scopus 로고
    • Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules
    • DOI 10.1074/mcp.M500089-MCP200
    • Zhang Y, Wolf-Yadlin A, Ross PL et al. Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. Mol. Cell Proteomics 4(9), 1240-1250 (2005). (Pubitemid 41448712)
    • (2005) Molecular and Cellular Proteomics , vol.4 , Issue.9 , pp. 1240-1250
    • Zhang, Y.1    Wolf-Yadlin, A.2    Ross, P.L.3    Pappin, D.J.4    Rush, J.5    Lauffenburger, D.A.6    White, F.M.7
  • 96
    • 33750456519 scopus 로고    scopus 로고
    • Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
    • DOI 10.1016/j.cell.2006.09.026, PII S0092867406012748
    • Olsen JV, Blagoev B, Gnad F et al. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127(3), 635-648 (2006). (Pubitemid 44647421)
    • (2006) Cell , vol.127 , Issue.3 , pp. 635-648
    • Olsen, J.V.1    Blagoev, B.2    Gnad, F.3    Macek, B.4    Kumar, C.5    Mortensen, P.6    Mann, M.7
  • 97
    • 20344363684 scopus 로고    scopus 로고
    • Cell Signalling: Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation
    • DOI 10.1126/science.1107627
    • Kratchmarova I, Blagoev B, Haack-Sorensen M, Kassem M, Mann M. Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation. Science 308(5727), 1472-1477 (2005). (Pubitemid 40791302)
    • (2005) Science , vol.308 , Issue.5727 , pp. 1472-1477
    • Kratchmarova, I.1    Blagoev, B.2    Haack-Sorensen, M.3    Kassem, M.4    Mann, M.5
  • 98
    • 59049086847 scopus 로고    scopus 로고
    • Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
    • Swaney DL, Wenger CD, Thomson JA, Coon JJ. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proc. Natl Acad. Sci. USA 106(4), 995-1000 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , Issue.4 , pp. 995-1000
    • Swaney, D.L.1    Wenger, C.D.2    Thomson, J.A.3    Coon, J.J.4
  • 99
    • 67849121794 scopus 로고    scopus 로고
    • Phosphoproteomic analysis of human embryonic stem cells
    • Brill LM, Xiong W, Lee KB et al. Phosphoproteomic analysis of human embryonic stem cells. Cell Stem Cell 5(2), 204-213 (2009).
    • (2009) Cell Stem Cell , vol.5 , Issue.2 , pp. 204-213
    • Brill, L.M.1    Xiong, W.2    Lee, K.B.3
  • 100
    • 67849106825 scopus 로고    scopus 로고
    • Phosphorylation dynamics during early differentiation of human embryonic stem cells
    • Van Hoof D, Munoz J, Braam SR et al. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell 5(2), 214-226 (2009).
    • (2009) Cell Stem Cell , vol.5 , Issue.2 , pp. 214-226
    • Van Hoof, D.1    Munoz, J.2    Braam, S.R.3
  • 101
    • 67849124643 scopus 로고    scopus 로고
    • Unraveling the human embryonic stem cell phosphoproteome
    • Hutchins AP, Robson P. Unraveling the human embryonic stem cell phosphoproteome. Cell Stem Cell 5(2), 126-128 (2009).
    • (2009) Cell Stem Cell , vol.5 , Issue.2 , pp. 126-128
    • Hutchins, A.P.1    Robson, P.2
  • 102
    • 75849156133 scopus 로고    scopus 로고
    • Simplistic pathways or complex networks?
    • Jorgensen C, Linding R. Simplistic pathways or complex networks? Curr. Opin. Genet. Dev. 20(1), 15-22 (2010).
    • (2010) Curr. Opin. Genet. Dev. , vol.20 , Issue.1 , pp. 15-22
    • Jorgensen, C.1    Linding, R.2
  • 104
    • 54249117296 scopus 로고    scopus 로고
    • Phosphorylation networks regulating JNK activity in diverse genetic backgrounds
    • Bakal C, Linding R, Llense F et al. Phosphorylation networks regulating JNK activity in diverse genetic backgrounds. Science 322(5900), 453-456 (2008).
    • (2008) Science , vol.322 , Issue.5900 , pp. 453-456
    • Bakal, C.1    Linding, R.2    Llense, F.3
  • 105
    • 33745865934 scopus 로고    scopus 로고
    • Chromatin in pluripotent embryonic stem cells and differentiation
    • DOI 10.1038/nrm1938, PII NRM1938
    • Meshorer E, Misteli T. Chromatin in pluripotent embryonic stem cells and differentiation. Nat. Rev. Mol. Cell Biol. 7(7), 540-546 (2006). (Pubitemid 44036459)
    • (2006) Nature Reviews Molecular Cell Biology , vol.7 , Issue.7 , pp. 540-546
    • Meshorer, E.1    Misteli, T.2
  • 106
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • DOI 10.1038/nrg2341, PII NRG2341
    • Suzuki MM, Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9(6), 465-476 (2008). (Pubitemid 351693975)
    • (2008) Nature Reviews Genetics , vol.9 , Issue.6 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 107
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
    • Kouzarides T. Chromatin modifications and their function. Cell 128(4), 693-705 (2007). (Pubitemid 46273577)
    • (2007) Cell , vol.128 , Issue.4 , pp. 693-705
    • Kouzarides, T.1
  • 108
  • 109
    • 33646872978 scopus 로고    scopus 로고
    • Chromatin signatures of pluripotent cell lines
    • Azuara V, Perry P, Sauer S et al. Chromatin signatures of pluripotent cell lines. Nat. Cell Biol. 8(5), 532-538 (2006).
    • (2006) Nat. Cell Biol. , vol.8 , Issue.5 , pp. 532-538
    • Azuara, V.1    Perry, P.2    Sauer, S.3
  • 110
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • Bernstein BE, Mikkelsen TS, Xie XH et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125(2), 315-326 (2006).
    • (2006) Cell , vol.125 , Issue.2 , pp. 315-326
    • Bernstein, B.E.1    Mikkelsen, T.S.2    Xie, X.H.3
  • 111
    • 34548434716 scopus 로고    scopus 로고
    • Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
    • DOI 10.1016/j.stem.2007.08.003, PII S1934590907001221
    • Pan GJ, Tian SL, Nie J et al. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1(3), 299-312 (2007). (Pubitemid 47355329)
    • (2007) Cell Stem Cell , vol.1 , Issue.3 , pp. 299-312
    • Pan, G.1    Tian, S.2    Nie, J.3    Yang, C.4    Ruotti, V.5    Wei, H.6    Jonsdottir, G.A.7    Stewart, R.8    Thomson, J.A.9
  • 112
    • 77649241203 scopus 로고    scopus 로고
    • Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency
    • Gonzalez R, Jennings LL, Knuth M et al. Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency. Proc. Natl Acad. Sci. USA 107(8), 3552-3557 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , Issue.8 , pp. 3552-3557
    • Gonzalez, R.1    Jennings, L.L.2    Knuth, M.3
  • 113
    • 77949334637 scopus 로고    scopus 로고
    • ATP dependent chromatin remodeling enzymes in embryonic stem cells
    • Saladi SV, de la Serna IL. ATP dependent chromatin remodeling enzymes in embryonic stem cells. Stem Cell Rev. 6(1), 62-73 (2010).
    • (2010) Stem Cell Rev. , vol.6 , Issue.1 , pp. 62-73
    • Saladi, S.V.1    De La Serna, I.L.2
  • 114
    • 46149110511 scopus 로고    scopus 로고
    • An RNAi Screen of Chromatin Proteins Identifies Tip60-p400 as a Regulator of Embryonic Stem Cell Identity
    • DOI 10.1016/j.cell.2008.05.031, PII S0092867408006922
    • Fazzio TG, Huff JT, Panning B. An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity. Cell 134(1), 162-174 (2008). (Pubitemid 351905738)
    • (2008) Cell , vol.134 , Issue.1 , pp. 162-174
    • Fazzio, T.G.1    Huff, J.T.2    Panning, B.3
  • 116
    • 0016159704 scopus 로고
    • The determination of the primary structure of histone f3 from chicken erythrocytes by automatic edman degradation
    • Brandt WF, Holt C. The determination of the primary structure of histone f3 from chicken erythrocytes by automatic edman degradation. Eur. J. Biochem. 46(2), 407-417 (1974).
    • (1974) Eur. J. Biochem. , vol.46 , Issue.2 , pp. 407-417
    • Brandt, W.F.1    Holt, C.2
  • 118
    • 0017327721 scopus 로고
    • Amino terminal sequence identity of ubiquitin and the nonhistone component of nuclear protein A24
    • DOI 10.1016/0006-291X(77)90352-7
    • Hunt LT, Dayhoff MO. Amino-terminal sequence identity of ubiquitin and nonhistone component of nuclear protein A24. Biochem. Biophys. Res. Commun. 74(2), 650-655 (1977). (Pubitemid 8022254)
    • (1977) Biochemical and Biophysical Research Communications , vol.74 , Issue.2 , pp. 650-655
    • Hunt, L.T.1    Dayhoff, M.O.2
  • 119
    • 77954834510 scopus 로고    scopus 로고
    • The current state of chromatin immunoprecipitation
    • Collas P. The current state of chromatin immunoprecipitation. Mol. Biotechnol. 45(1), 87-100 (2010).
    • (2010) Mol. Biotechnol. , vol.45 , Issue.1 , pp. 87-100
    • Collas, P.1
  • 121
    • 38649126918 scopus 로고    scopus 로고
    • Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3K4/K27 trimethylation
    • DOI 10.1016/j.stem.2007.12.011, PII S193459090700327X
    • Fouse SD, Shen Y, Pellegrini M et al. Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3K4/K27 trimethylation. Cell Stem Cell 2(2), 160-169 (2008). (Pubitemid 351168712)
    • (2008) Cell Stem Cell , vol.2 , Issue.2 , pp. 160-169
    • Fouse, S.D.1    Shen, Y.2    Pellegrini, M.3    Cole, S.4    Meissner, A.5    Van Neste, L.6    Jaenisch, R.7    Fan, G.8
  • 122
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister R, Pelizzola M, Dowen RH et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462(7271), 315-322 (2009).
    • (2009) Nature , vol.462 , Issue.7271 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3
  • 123
    • 77953809032 scopus 로고    scopus 로고
    • Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
    • Hawkins R, Hon GC, K. Lee L et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells Cell Stem Cell 6(5), 479-491 (2010).
    • (2010) Cell Stem Cell , vol.6 , Issue.5 , pp. 479-491
    • Hawkins, R.1    Hon, G.C.2    Lee L, K.3
  • 124
    • 77951855269 scopus 로고    scopus 로고
    • Quantitative mass spectrometry of histones h3.2 and h3.3 in suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36
    • Jung HR, Pasini D, Helin K, Jensen ON. Quantitative mass spectrometry of histones h3.2 and h3.3 in suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36. Mol. Cell Proteomics 9(5), 838-850 (2010).
    • (2010) Mol. Cell Proteomics , vol.9 , Issue.5 , pp. 838-850
    • Jung, H.R.1    Pasini, D.2    Helin, K.3    Jensen, O.N.4
  • 126
    • 33646899550 scopus 로고    scopus 로고
    • 3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer
    • DOI 10.1074/mcp.T500042-MCP200
    • Macek B, Waanders LF, Olsen JV, Mann M. Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer. Mol. Cell Proteomics 5(5), 949-958 (2006). (Pubitemid 43792803)
    • (2006) Molecular and Cellular Proteomics , vol.5 , Issue.5 , pp. 949-958
    • Macek, B.1    Waanders, L.F.2    Olsen, J.V.3    Mann, M.4
  • 127
    • 0000944563 scopus 로고    scopus 로고
    • Electron capture dissociation of multiply charged protein cations. A nonergodic process
    • Zubarev RA, Kelleher NL, McLafferty FW. Electron capture dissociation of multiply charged protein cations. A nonergodic process. J. Am. Chem. Soc. 120(13), 3265-3266 (1998).
    • (1998) J. Am. Chem. Soc. , vol.120 , Issue.13 , pp. 3265-3266
    • Zubarev, R.A.1    Kelleher, N.L.2    McLafferty, F.W.3
  • 129
    • 0042670024 scopus 로고    scopus 로고
    • Protein mass analysis of histones
    • DOI 10.1016/S1046-2023(03)00082-3
    • Galasinski SC, Resing KA, Ahn NG. Protein mass analysis of histones. Methods 31(1), 3-11 (2003). (Pubitemid 36945165)
    • (2003) Methods , vol.31 , Issue.1 , pp. 3-11
    • Galasinski, S.C.1    Resing, K.A.2    Ahn, N.G.3
  • 131
    • 47249157351 scopus 로고    scopus 로고
    • Combinatorial modification of human histone H4 quantitated by two-dimensional liquid chromatography coupled with top down mass spectrometry
    • Pesavento JJ, Bullock CR, Leduc RD, Mizzen CA, Kelleher NL. Combinatorial modification of human histone H4 quantitated by two-dimensional liquid chromatography coupled with top down mass spectrometry. J. Biol. Chem. 283(22), 14927-14937 (2008).
    • (2008) J. Biol. Chem. , vol.283 , Issue.22 , pp. 14927-14937
    • Pesavento, J.J.1    Bullock, C.R.2    Leduc, R.D.3    Mizzen, C.A.4    Kelleher, N.L.5
  • 133
    • 77951833317 scopus 로고    scopus 로고
    • High resolution electron transfer dissociation studies of unfractionated intact histones from murine embryonic stem cells using on-line capillary LC separation
    • Eliuk SM, Maltby D, Panning B, Burlingame AL. High resolution electron transfer dissociation studies of unfractionated intact histones from murine embryonic stem cells using on-line capillary LC separation. Mol. Cell Proteomics 9(5), 824-837 (2010).
    • (2010) Mol. Cell Proteomics , vol.9 , Issue.5 , pp. 824-837
    • Eliuk, S.M.1    Maltby, D.2    Panning, B.3    Burlingame, A.L.4
  • 134
    • 65249180173 scopus 로고    scopus 로고
    • An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency
    • Ho L, Ronan JL, Wu J et al. An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency. Proc. Natl Acad. Sci. USA 106(13), 5181-5186 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , Issue.13 , pp. 5181-5186
    • Ho, L.1    Ronan, J.L.2    Wu, J.3
  • 135
    • 77951821532 scopus 로고    scopus 로고
    • A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency
    • Mak AB, Ni Z, Hewel JA et al. A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency. Mol. Cell Proteomics 9(5), 811-823 (2010).
    • (2010) Mol. Cell Proteomics , vol.9 , Issue.5 , pp. 811-823
    • Mak, A.B.1    Ni, Z.2    Hewel, J.A.3
  • 136
    • 77149165069 scopus 로고    scopus 로고
    • Technologies for plasma membrane proteomics
    • Cordwell SJ, Thingholm TE. Technologies for plasma membrane proteomics. Proteomics 10(4), 611-627 (2010).
    • (2010) Proteomics , vol.10 , Issue.4 , pp. 611-627
    • Cordwell, S.J.1    Thingholm, T.E.2
  • 137
    • 57649146492 scopus 로고    scopus 로고
    • Stem cell markers: Insights from membrane proteomics?
    • Ahn SM, Goode RJA, Simpson RJ. Stem cell markers: insights from membrane proteomics? Proteomics 8(23-24), 4946-4957 (2008).
    • (2008) Proteomics , vol.8 , Issue.23-24 , pp. 4946-4957
    • Ahn, S.M.1    Rja, G.2    Simpson, R.J.3
  • 139
    • 27144498682 scopus 로고    scopus 로고
    • Plasma membrane-focused proteomics: Dramatic changes in surface expression during the maturation of human dendritic cells
    • DOI 10.1002/pmic.200401258
    • Watarai H, Hinohara A, Nagafune J, Nakayama T, Taniguchi M, Yamaguchi Y. Plasma membrane-focused proteomics: dramatic changes in surface expression during the maturation of human dendritic cells. Proteomics 5(15), 4001-4011 (2005). (Pubitemid 41502495)
    • (2005) Proteomics , vol.5 , Issue.15 , pp. 4001-4011
    • Watarai, H.1    Hinohara, A.2    Nagafune, J.3    Nakayama, T.4    Taniguchi, M.5    Yamaguchi, Y.6
  • 140
    • 33644841214 scopus 로고    scopus 로고
    • Integration of a two-phase partition method into proteomics research on rat liver plasma membrane proteins
    • DOI 10.1021/pr050387a
    • Cao R, Li X, Liu Z et al. Integration of a two-phase partition method into proteomics research on rat liver plasma membrane proteins. J. Proteome Res. 5(3), 634-642 (2006). (Pubitemid 43364104)
    • (2006) Journal of Proteome Research , vol.5 , Issue.3 , pp. 634-642
    • Cao, R.1    Li, X.2    Liu, Z.3    Peng, X.4    Hu, W.5    Wang, X.6    Chen, P.7    Xie, J.8    Liang, S.9
  • 142
    • 61849164561 scopus 로고    scopus 로고
    • Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry
    • Chen R, Jiang X, Sun D et al. Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. J. Proteome Res. 8(2), 651-661 (2009).
    • (2009) J. Proteome Res. , vol.8 , Issue.2 , pp. 651-661
    • Chen, R.1    Jiang, X.2    Sun, D.3
  • 143
    • 0038699625 scopus 로고    scopus 로고
    • Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
    • DOI 10.1038/nbt827
    • Zhang H, Li XJ, Martin DB, Aebersold R. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 21(6), 660-666 (2003). (Pubitemid 36638093)
    • (2003) Nature Biotechnology , vol.21 , Issue.6 , pp. 660-666
    • Zhang, H.1    Li, X.-J.2    Martin, D.B.3    Aebersold, R.4
  • 144
    • 1842529218 scopus 로고    scopus 로고
    • Proteomic analysis of integral plasma membrane proteins
    • DOI 10.1021/ac0354037
    • Zhao Y, Zhang W, Kho Y. Proteomic analysis of integral plasma membrane proteins. Anal. Chem. 76(7), 1817-1823 (2004). (Pubitemid 38451494)
    • (2004) Analytical Chemistry , vol.76 , Issue.7 , pp. 1817-1823
    • Zhao, Y.1    Zhang, W.2    Kho, Y.3    Zhao, Y.4
  • 145
    • 55749112976 scopus 로고    scopus 로고
    • Membrane proteins and membrane proteomics
    • Tan S, Tan HT, Chung MC. Membrane proteins and membrane proteomics. Proteomics 8(19), 3924-3932 (2008).
    • (2008) Proteomics , vol.8 , Issue.19 , pp. 3924-3932
    • Tan, S.1    Tan, H.T.2    Chung, M.C.3
  • 146
    • 55749095513 scopus 로고    scopus 로고
    • Cell surface biomarkers of embryonic stem cells
    • Nagano K, Yoshida Y, Isobe T. Cell surface biomarkers of embryonic stem cells. Proteomics 8(19), 4025-4035 (2008).
    • (2008) Proteomics , vol.8 , Issue.19 , pp. 4025-4035
    • Nagano, K.1    Yoshida, Y.2    Isobe, T.3
  • 148
    • 27144462628 scopus 로고    scopus 로고
    • Differential expression profiling of membrane proteins by quantitative proteomics in a human mesenchymal stem cell line undergoing osteoblast differentiation
    • DOI 10.1634/stemcells.2004-0372
    • Foster LJ, Zeemann PA, Li C, Mann M, Jensen ON, Kassem M. Differential expression profiling of membrane proteins by quantitative proteomics in a human mesenchymal stem cell line undergoing osteoblast differentiation. Stem Cells 23(9), 1367-1377 (2005). (Pubitemid 41504924)
    • (2005) Stem Cells , vol.23 , Issue.9 , pp. 1367-1377
    • Foster, L.J.1    Zeemann, P.A.2    Li, C.3    Mann, M.4    Jensen, O.N.5    Kassem, M.6
  • 149
    • 49149111510 scopus 로고    scopus 로고
    • Identification of a membrane proteomic signature for human embryonic stem cells independent of culture conditions
    • Harkness L, Christiansen H, Nehlin J, Barington T, Andersen JS, Kassem M. Identification of a membrane proteomic signature for human embryonic stem cells independent of culture conditions. Stem Cell Res. 1(3), 219-227 (2008).
    • (2008) Stem Cell Res. , vol.1 , Issue.3 , pp. 219-227
    • Harkness, L.1    Christiansen, H.2    Nehlin, J.3    Barington, T.4    Andersen, J.S.5    Kassem, M.6
  • 150
    • 59449101305 scopus 로고    scopus 로고
    • Proteomic analysis of membrane proteins expressed specifically in pluripotent murine embryonic stem cells
    • Intoh A, Kurisaki A, Yamanaka Y et al. Proteomic analysis of membrane proteins expressed specifically in pluripotent murine embryonic stem cells. Proteomics 9(1), 126-137 (2009).
    • (2009) Proteomics , vol.9 , Issue.1 , pp. 126-137
    • Intoh, A.1    Kurisaki, A.2    Yamanaka, Y.3
  • 151
    • 77949862634 scopus 로고    scopus 로고
    • Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes
    • Van Hoof D, Dormeyer W, Braam SR et al. Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes. J. Proteome Res. 9(3), 1610-1618 (2010).
    • (2010) J. Proteome Res. , vol.9 , Issue.3 , pp. 1610-1618
    • Van Hoof, D.1    Dormeyer, W.2    Braam, S.R.3
  • 152
    • 39149115929 scopus 로고    scopus 로고
    • Defining molecular cornerstomes during fibroblast to iPS cell reprogramming in mouse
    • Stadtfeld M, Maherali N, Breault DT, Hochedlinger K. Defining molecular cornerstomes during fibroblast to iPS cell reprogramming in mouse. Cell Stem Cell. 2(3), 230-240 (2008).
    • (2008) Cell Stem Cell. , vol.2 , Issue.3 , pp. 230-240
    • Stadtfeld, M.1    Maherali, N.2    Breault, D.T.3    Hochedlinger, K.4
  • 153
    • 15544383394 scopus 로고    scopus 로고
    • Embryonic stem cells: Prospects for developmental biology and cell therapy
    • DOI 10.1152/physrev.00054.2003
    • Wobus AM, Boheler KR. Embryonic stem cells: prospects for developmental biology and cell therapy. Physiol. Rev. 85(2), 635-678 (2005). (Pubitemid 40404638)
    • (2005) Physiological Reviews , vol.85 , Issue.2 , pp. 635-678
    • Wobus, A.M.1    Boheler, K.R.2
  • 155
    • 70549113220 scopus 로고    scopus 로고
    • Perspectives of targeted mass spectrometry for protein biomarker verification
    • Huttenhain R, Malmstrom J, Picotti P, Aebersold R. Perspectives of targeted mass spectrometry for protein biomarker verification. Curr. Opin. Chem. Biol. 13(5-6), 518-525 (2009).
    • (2009) Curr. Opin. Chem. Biol. , vol.13 , Issue.5-6 , pp. 518-525
    • Huttenhain, R.1    Malmstrom, J.2    Picotti, P.3    Aebersold, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.