-
1
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird, A. DNA methylation patterns and epigenetic memory. Genes Dev. 16, 6-21 (2002).
-
(2002)
Genes Dev
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
2
-
-
39549083972
-
-
Eds Allis, C. D, Jenuwein, T, Reinberg, D. & Caparros, M. L, Cold Spring Harbor Press, New York
-
Kouzarides, T. & Berger, S. L. in Epigenetics (Eds Allis, C. D., Jenuwein, T., Reinberg, D. & Caparros, M. L.) 191-209 (Cold Spring Harbor Press, New York, 2006).
-
(2006)
Epigenetics
, pp. 191-209
-
-
Kouzarides, T.1
Berger, S.L.2
-
3
-
-
33748163064
-
Proline isomerization of histone H3 regulates lysine methylation and gene expression
-
Nelson, C. J., Santos-Rosa, H. & Kouzarides, T. Proline isomerization of histone H3 regulates lysine methylation and gene expression. Cell 126, 905-916 (2006).
-
(2006)
Cell
, vol.126
, pp. 905-916
-
-
Nelson, C.J.1
Santos-Rosa, H.2
Kouzarides, T.3
-
4
-
-
11144332565
-
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
-
Shi, Y. et al. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119, 941-953 (2004).
-
(2004)
Cell
, vol.119
, pp. 941-953
-
-
Shi, Y.1
-
5
-
-
25144519737
-
An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation
-
Lee, M. G., Wynder, C., Cooch, N. & Shiekhattar, R. An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation. Nature 437, 432-435 (2005).
-
(2005)
Nature
, vol.437
, pp. 432-435
-
-
Lee, M.G.1
Wynder, C.2
Cooch, N.3
Shiekhattar, R.4
-
6
-
-
33947245128
-
RBP2 belongs to a family of demethylases, specific for tri- and dimethylated lysine 4 on histone 3
-
Christensen, J. et al. RBP2 belongs to a family of demethylases, specific for tri- and dimethylated lysine 4 on histone 3. Cell 128, 1063-1076 (2007).
-
(2007)
Cell
, vol.128
, pp. 1063-1076
-
-
Christensen, J.1
-
7
-
-
33746332412
-
The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3
-
Cloos, P. A. et al. The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3. Nature 442, 307-311 (2006).
-
(2006)
Nature
, vol.442
, pp. 307-311
-
-
Cloos, P.A.1
-
8
-
-
33947302685
-
The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases
-
Iwase, S. et al. The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases. Cell 128, 1077-1088 (2007).
-
(2007)
Cell
, vol.128
, pp. 1077-1088
-
-
Iwase, S.1
-
9
-
-
33847383585
-
Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a Polycomb-like protein
-
Lee, M. G., Norman, J., Shilatifard, A. & Shiekhattar, R. Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a Polycomb-like protein. Cell 128, 877-887 (2007).
-
(2007)
Cell
, vol.128
, pp. 877-887
-
-
Lee, M.G.1
Norman, J.2
Shilatifard, A.3
Shiekhattar, R.4
-
10
-
-
32844454603
-
Histone demethylation by a family of JmjC domain-containing proteins
-
Tsukada, Y. et al. Histone demethylation by a family of JmjC domain-containing proteins. Nature 439, 811-816 (2006).
-
(2006)
Nature
, vol.439
, pp. 811-816
-
-
Tsukada, Y.1
-
11
-
-
33646124469
-
Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases
-
Whetstine, J. R. et al. Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell 125, 467-481 (2006).
-
(2006)
Cell
, vol.125
, pp. 467-481
-
-
Whetstine, J.R.1
-
12
-
-
33646138230
-
JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor
-
Yamane, K. et al. JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor. Cell 125, 483-495 (2006).
-
(2006)
Cell
, vol.125
, pp. 483-495
-
-
Yamane, K.1
-
13
-
-
32444434989
-
Histone H4-K16 acetylation controls chromatin structure and protein interactions
-
Shogren-Knaak, M. et al. Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science 311, 844-847 (2006).
-
(2006)
Science
, vol.311
, pp. 844-847
-
-
Shogren-Knaak, M.1
-
14
-
-
0033519641
-
Structure and ligand of a histone acetyltransferase bromodomain
-
Dhalluin, C. et al. Structure and ligand of a histone acetyltransferase bromodomain. Nature 399, 491-496 (1999).
-
(1999)
Nature
, vol.399
, pp. 491-496
-
-
Dhalluin, C.1
-
15
-
-
0035282458
-
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain
-
Bannister, A. J. et al. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410, 120-124 (2001).
-
(2001)
Nature
, vol.410
, pp. 120-124
-
-
Bannister, A.J.1
-
16
-
-
0035282573
-
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
-
Lachner, M., O'Carroll, D., Rea, S., Mechtler, K. & Jenuwein, T. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 410, 116-120 (2001).
-
(2001)
Nature
, vol.410
, pp. 116-120
-
-
Lachner, M.1
O'Carroll, D.2
Rea, S.3
Mechtler, K.4
Jenuwein, T.5
-
17
-
-
13444267442
-
Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation
-
Pray-Grant, M. G., Daniel, J. A., Schieltz, D., Yates, J. R. & Grant, P. A. Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation. Nature 433, 434-438 (2005).
-
(2005)
Nature
, vol.433
, pp. 434-438
-
-
Pray-Grant, M.G.1
Daniel, J.A.2
Schieltz, D.3
Yates, J.R.4
Grant, P.A.5
-
18
-
-
33751116960
-
Histone H3 Lys 4 methylation: Caught in a bind?
-
Sims, R. J. & Reinberg, D. Histone H3 Lys 4 methylation: caught in a bind? Genes Dev. 20, 2779-2786 (2006).
-
(2006)
Genes Dev
, vol.20
, pp. 2779-2786
-
-
Sims, R.J.1
Reinberg, D.2
-
19
-
-
20444417108
-
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development
-
Wysocka, J. et al. WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell 121, 859-872 (2005).
-
(2005)
Cell
, vol.121
, pp. 859-872
-
-
Wysocka, J.1
-
20
-
-
33746828109
-
Molecular recognition of histone H3 by the WD40 protein WDR5
-
Couture, J. F., Collazo, E. & Trievel, R. C. Molecular recognition of histone H3 by the WD40 protein WDR5. Nature Struct. Mol. Biol. 13, 698-703 (2006).
-
(2006)
Nature Struct. Mol. Biol
, vol.13
, pp. 698-703
-
-
Couture, J.F.1
Collazo, E.2
Trievel, R.C.3
-
21
-
-
33748364351
-
Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes
-
Steward, M. M. et al. Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes. Nature Struct. Mol. Biol. 13, 852-854 (2006).
-
(2006)
Nature Struct. Mol. Biol
, vol.13
, pp. 852-854
-
-
Steward, M.M.1
-
22
-
-
33745839365
-
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling
-
Wysocka, J. et al. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling. Nature 442, 86-90 (2006).
-
(2006)
Nature
, vol.442
, pp. 86-90
-
-
Wysocka, J.1
-
23
-
-
33750328340
-
The Yng1p plant homeodomain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3
-
Martin, D. G. et al. The Yng1p plant homeodomain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3. Mol. Cell. Biol. 26, 7871-7879 (2006).
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 7871-7879
-
-
Martin, D.G.1
-
24
-
-
0035577668
-
Histone H3 specific acetyltransferases are essential for cell cycle progression
-
Howe, L. et al. Histone H3 specific acetyltransferases are essential for cell cycle progression. Genes Dev. 15, 3144-3154 (2001).
-
(2001)
Genes Dev
, vol.15
, pp. 3144-3154
-
-
Howe, L.1
-
25
-
-
33745868054
-
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
-
Shi, X. et al. ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature 442, 96-99 (2006).
-
(2006)
Nature
, vol.442
, pp. 96-99
-
-
Shi, X.1
-
26
-
-
33646438365
-
Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A
-
Huang, Y., Fang, J., Bedford, M. T., Zhang, Y. & Xu, R. M. Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A. Science 312, 748-751 (2006).
-
(2006)
Science
, vol.312
, pp. 748-751
-
-
Huang, Y.1
Fang, J.2
Bedford, M.T.3
Zhang, Y.4
Xu, R.M.5
-
27
-
-
0038094501
-
Nucleosomes unfold completely at a transcriptionally active promoter
-
Boeger, H., Griesenbeck, J., Strattan, J. S. & Kornberg, R. D. Nucleosomes unfold completely at a transcriptionally active promoter. Mol. Cell 11, 1587-1598 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 1587-1598
-
-
Boeger, H.1
Griesenbeck, J.2
Strattan, J.S.3
Kornberg, R.D.4
-
28
-
-
27144544622
-
Assembly of variant histones into chromatin
-
Henikoff, S. & Ahmad, K. Assembly of variant histones into chromatin. Annu. Rev. Cell Dev. Biol. 21, 133-153 (2005).
-
(2005)
Annu. Rev. Cell Dev. Biol
, vol.21
, pp. 133-153
-
-
Henikoff, S.1
Ahmad, K.2
-
29
-
-
29244490064
-
Control of transcription through intragenic patterns of nucleosome composition
-
Lieb, J. D. & Clarke, N. D. Control of transcription through intragenic patterns of nucleosome composition. Cell 123, 1187-1190 (2005).
-
(2005)
Cell
, vol.123
, pp. 1187-1190
-
-
Lieb, J.D.1
Clarke, N.D.2
-
30
-
-
0038094502
-
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter
-
Reinke, H. & Horz, W. Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol. Cell 11, 1599-1607 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 1599-1607
-
-
Reinke, H.1
Horz, W.2
-
31
-
-
33746324216
-
Chromatin modifications by methylation and ubiquitination: Implications in the regulation of gene expression
-
Shilatifard, A. Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annu. Rev. Biochem. 75, 243-269 (2006).
-
(2006)
Annu. Rev. Biochem
, vol.75
, pp. 243-269
-
-
Shilatifard, A.1
-
32
-
-
0041828953
-
Transcription elongation factors repress transcription initiation from cryptic sites
-
Kaplan, C. D., Laprade, L. & Winston, F. Transcription elongation factors repress transcription initiation from cryptic sites. Science 301, 1096-1099 (2003).
-
(2003)
Science
, vol.301
, pp. 1096-1099
-
-
Kaplan, C.D.1
Laprade, L.2
Winston, F.3
-
33
-
-
0041828954
-
FACT facilitates transcription- dependent nucleosome alteration
-
Belotserkovskaya, R. et al. FACT facilitates transcription- dependent nucleosome alteration. Science 301, 1090-1093 (2003).
-
(2003)
Science
, vol.301
, pp. 1090-1093
-
-
Belotserkovskaya, R.1
-
34
-
-
33845968873
-
Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions
-
Govind, C. K., Zhang, F., Qiu, H., Hofmeyer, K. & Hinnebusch, A. G. Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions. Mol. Cell 25, 31-42 (2007).
-
(2007)
Mol. Cell
, vol.25
, pp. 31-42
-
-
Govind, C.K.1
Zhang, F.2
Qiu, H.3
Hofmeyer, K.4
Hinnebusch, A.G.5
-
35
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
Carrozza, M. J. et al. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123, 581-592 (2005).
-
(2005)
Cell
, vol.123
, pp. 581-592
-
-
Carrozza, M.J.1
-
36
-
-
29144468972
-
Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
-
Joshi, A. A. & Struhl, K. Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. Mol. Cell 20, 971-978 (2005).
-
(2005)
Mol. Cell
, vol.20
, pp. 971-978
-
-
Joshi, A.A.1
Struhl, K.2
-
37
-
-
27744587302
-
Cotranscriptional Set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
-
Keogh, M. C. et al. Cotranscriptional Set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123, 593-605 (2005).
-
(2005)
Cell
, vol.123
, pp. 593-605
-
-
Keogh, M.C.1
-
38
-
-
33744783407
-
Histone modification patterns associated with the human X chromosome
-
628-634
-
Brinkman, A.B. et al. Histone modification patterns associated with the human X chromosome. EMBO Rep. 7, 628-634 (2006).
-
(2006)
EMBO Rep
, vol.7
-
-
Brinkman, A.B.1
-
39
-
-
23044431656
-
Histone H3 lysine 9 methylation and HP1γ are associated with transcription elongation through mammalian chromatin
-
Vakoc, C. R., Mandat, S. A., Olenchock, B. A. & Blobel, G. A. Histone H3 lysine 9 methylation and HP1γ are associated with transcription elongation through mammalian chromatin. Mol. Cell 19, 381-391 (2005).
-
(2005)
Mol. Cell
, vol.19
, pp. 381-391
-
-
Vakoc, C.R.1
Mandat, S.A.2
Olenchock, B.A.3
Blobel, G.A.4
-
40
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
-
Zhang, X. et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126, 1189-1201 (2006).
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
-
41
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman, D., Gehring, M., Tran, R. K., Ballinger, T. & Henikoff, S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genet. 39, 61-69 (2007).
-
(2007)
Nature Genet
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
-
42
-
-
20444375490
-
Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription
-
Morillon, A., Karabetsou, N., Nair, A. & Mellor, J. Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription. Mol. Cell 18, 723-734 (2005).
-
(2005)
Mol. Cell
, vol.18
, pp. 723-734
-
-
Morillon, A.1
Karabetsou, N.2
Nair, A.3
Mellor, J.4
-
43
-
-
0037111879
-
Requirement of Hos2 histone deacetylase for gene activity in yeast
-
Wang, A., Kurdistani, S. K. & Grunstein, M. Requirement of Hos2 histone deacetylase for gene activity in yeast. Science 298, 1412-1414 (2002).
-
(2002)
Science
, vol.298
, pp. 1412-1414
-
-
Wang, A.1
Kurdistani, S.K.2
Grunstein, M.3
-
44
-
-
0242361623
-
Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8
-
Henry, K. W. et al. Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. Genes Dev. 17, 2648-2663 (2003).
-
(2003)
Genes Dev
, vol.17
, pp. 2648-2663
-
-
Henry, K.W.1
-
45
-
-
2642542643
-
A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin
-
Schotta, G. et al. A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Genes Dev. 18, 1251-1262 (2004).
-
(2004)
Genes Dev
, vol.18
, pp. 1251-1262
-
-
Schotta, G.1
-
46
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E. et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326 (2006).
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
-
47
-
-
33846141146
-
Ctk complex-mediated regulation of histone methylation by COMPASS
-
Wood, A. et al. Ctk complex-mediated regulation of histone methylation by COMPASS. Mol. Cell. Biol. 27, 709-720 (2007).
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 709-720
-
-
Wood, A.1
-
48
-
-
33846174634
-
The RNA polymerase II kinase Ctk1 regulates positioning of a 5′ histone methylation boundary along genes
-
Xiao, T. et al. The RNA polymerase II kinase Ctk1 regulates positioning of a 5′ histone methylation boundary along genes. Mol. Cell. Biol. 27, 721-731 (2007).
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 721-731
-
-
Xiao, T.1
-
49
-
-
33646691283
-
Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II
-
Pavri, R. et al. Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. Cell 125, 703-717 (2006).
-
(2006)
Cell
, vol.125
, pp. 703-717
-
-
Pavri, R.1
-
50
-
-
20444397430
-
Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF
-
Dou, Y. et al. Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Cell 121, 873-885 (2005).
-
(2005)
Cell
, vol.121
, pp. 873-885
-
-
Dou, Y.1
|