-
1
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, et al. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125:315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
-
2
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
Pan G, et al. (2007) Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1:299-312.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
-
3
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther MG, et al. (2007) A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130:77-88.
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
-
4
-
-
33745865934
-
Opinion-Chromatin in pluripotent embryonic stem cells and differentiation
-
Meshorer E, Misteli T (2006) Opinion-Chromatin in pluripotent embryonic stem cells and differentiation. Nat Rev Mol Cell Biol 7:540-546.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 540-546
-
-
Meshorer, E.1
Misteli, T.2
-
5
-
-
33745461938
-
Btg2 enhances retinoic acid-induced differentiation by modulating histone H4 methylation and acetylation
-
Passeri D, et al. (2006) Btg2 enhances retinoic acid-induced differentiation by modulating histone H4 methylation and acetylation. Mol Cell Biol 26:5023-5032.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 5023-5032
-
-
Passeri, D.1
-
7
-
-
13444267442
-
Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation
-
Pray-Grant MG, et al. (2005) Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation. Nature 433:434-438.
-
(2005)
Nature
, vol.433
, pp. 434-438
-
-
Pray-Grant, M.G.1
-
8
-
-
0035839136
-
Translating the histone code
-
Jenuwein T, Allis CD (2001) Translating the histone code. Science 293:1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
9
-
-
15744396813
-
The key to development: Interpreting the histone code?
-
Margueron R, Trojer P, Reinberg D (2005) The key to development: Interpreting the histone code? Curr Opin Genet Dev 15:163-176.
-
(2005)
Curr Opin Genet Dev
, vol.15
, pp. 163-176
-
-
Margueron, R.1
Trojer, P.2
Reinberg, D.3
-
10
-
-
0036850325
-
Cellular memory and the histone code
-
Turner BM (2002) Cellular memory and the histone code. Cell 111:285-291.
-
(2002)
Cell
, vol.111
, pp. 285-291
-
-
Turner, B.M.1
-
11
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature 403:41-45.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
12
-
-
23944462969
-
Genome-wide map of nucleosorne acetylation and methylation in yeast
-
Pokholok DK, et al. (2005) Genome-wide map of nucleosorne acetylation and methylation in yeast. Cell 122:517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
-
13
-
-
33644856140
-
Functions of histone-modifying enzymes in development
-
Lin WC, Dent SYR (2006) Functions of histone-modifying enzymes in development. Curr Opin Genet Dev 16:137-142.
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 137-142
-
-
Lin, W.C.1
Dent, S.Y.R.2
-
14
-
-
2942718698
-
Histone code modifications on pluripotential nuclei of reprogrammed somatic cells
-
Kimura H, Tada M, Nakatsuji N, Tada T (2004) Histone code modifications on pluripotential nuclei of reprogrammed somatic cells. Mol Cell Biol 24:5710-5720.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 5710-5720
-
-
Kimura, H.1
Tada, M.2
Nakatsuji, N.3
Tada, T.4
-
15
-
-
1042302747
-
Histone deacetylase activity is required for embryonic stem cell differentiation
-
Lee JH, Hart SRL, Skalnik DG (2004) Histone deacetylase activity is required for embryonic stem cell differentiation. Genesis 38:32-38.
-
(2004)
Genesis
, vol.38
, pp. 32-38
-
-
Lee, J.H.1
Hart, S.R.L.2
Skalnik, D.G.3
-
16
-
-
35148867907
-
UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development
-
Agger K, et al. (2007) UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development. Nature 449:731-734.
-
(2007)
Nature
, vol.449
, pp. 731-734
-
-
Agger, K.1
-
17
-
-
35148898348
-
A histone H3 lysine 27 demethylase regulates animal posterior development
-
Lan F, et al. (2007) A histone H3 lysine 27 demethylase regulates animal posterior development. Nature 449:689-694.
-
(2007)
Nature
, vol.449
, pp. 689-694
-
-
Lan, F.1
-
18
-
-
35348993743
-
Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination
-
Lee MG, et al. (2007) Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination. Science 318:447-450.
-
(2007)
Science
, vol.318
, pp. 447-450
-
-
Lee, M.G.1
-
19
-
-
34147177521
-
Organismal differences in post-translational modifications in histones H3 and H4
-
Garcia BA, et al. (2007) Organismal differences in post-translational modifications in histones H3 and H4. J Biol Chem 282:7641-7655.
-
(2007)
J Biol Chem
, vol.282
, pp. 7641-7655
-
-
Garcia, B.A.1
-
21
-
-
33745700686
-
Quantitative analysis of modified proteins and their positional isomers by tandem mass spectrometry: Human histone H4
-
Pesavento JJ, Mizzen CA, Kelleher NL (2006) Quantitative analysis of modified proteins and their positional isomers by tandem mass spectrometry: Human histone H4. Anal Chem 78:4271-4280.
-
(2006)
Anal Chem
, vol.78
, pp. 4271-4280
-
-
Pesavento, J.J.1
Mizzen, C.A.2
Kelleher, N.L.3
-
22
-
-
33847768829
-
Long-distance combinatorial linkage between methylation and acetylation on histone H3N termini
-
Taverna SD, et al. (2007) Long-distance combinatorial linkage between methylation and acetylation on histone H3N termini. Proc Natl Acad Sci USA 104:2086-2091.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2086-2091
-
-
Taverna, S.D.1
-
23
-
-
1642272372
-
Shotgun annotation of histone modifications: A new approach for streamlined characterization of proteins by top down mass spectrometry
-
Pesavento JJ, Kim YB, Taylor GK, Kelleher NL (2004) Shotgun annotation of histone modifications: A new approach for streamlined characterization of proteins by top down mass spectrometry. J Am Chem Soc 126:3386-3387.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 3386-3387
-
-
Pesavento, J.J.1
Kim, Y.B.2
Taylor, G.K.3
Kelleher, N.L.4
-
24
-
-
32344452605
-
Precise characterization of human histories in the H2A gene family by top down mass spectrometry
-
Boyne MT, Pesavento JJ, Mizzen CA, Kelleher NL (2006) Precise characterization of human histories in the H2A gene family by top down mass spectrometry. J Proteome Res 5:248-253.
-
(2006)
J Proteome Res
, vol.5
, pp. 248-253
-
-
Boyne, M.T.1
Pesavento, J.J.2
Mizzen, C.A.3
Kelleher, N.L.4
-
25
-
-
32344453899
-
Mass spectrometric characterization of human histone H3: A bird's eye view
-
Thomas CE, Kelleher NL, Mizzen CA (2006) Mass spectrometric characterization of human histone H3: A bird's eye view. J Proteome Res 5:240-247.
-
(2006)
J Proteome Res
, vol.5
, pp. 240-247
-
-
Thomas, C.E.1
Kelleher, N.L.2
Mizzen, C.A.3
-
26
-
-
32344453537
-
Gene-specific characterization of human histone H2B by electron capture dissociation
-
Siuti N, et al. (2006) Gene-specific characterization of human histone H2B by electron capture dissociation. J Proteome Res 5:233-239.
-
(2006)
J Proteome Res
, vol.5
, pp. 233-239
-
-
Siuti, N.1
-
27
-
-
5644231221
-
Characterization of Tetrahymena histone H2B variants and posttranslational populations by electron capture dissociation (ECD) Fourier transform ion cyclotron mass spectrometry (FT-ICR MS)
-
Medzihradszky KF, et al. (2004) Characterization of Tetrahymena histone H2B variants and posttranslational populations by electron capture dissociation (ECD) Fourier transform ion cyclotron mass spectrometry (FT-ICR MS). Mol Cell Proteomics 3:872-886.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 872-886
-
-
Medzihradszky, K.F.1
-
28
-
-
2442429471
-
Comparison of peptide mass mapping and electron capture dissociation as assays for histone posttranslational modifications
-
Zhang LW, Freitas MA (2004) Comparison of peptide mass mapping and electron capture dissociation as assays for histone posttranslational modifications. Int J Mass Spectrom 234:213-225.
-
(2004)
Int J Mass Spectrom
, vol.234
, pp. 213-225
-
-
Zhang, L.W.1
Freitas, M.A.2
-
29
-
-
37549014575
-
Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle
-
Pesavento JJ, Yang H, Kelleher NL, Mizzen CA (2008) Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle. Mol Cell Biol 28:468-486.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 468-486
-
-
Pesavento, J.J.1
Yang, H.2
Kelleher, N.L.3
Mizzen, C.A.4
-
30
-
-
22144482323
-
Protein identification using sequential ion/ion reactions and tandem mass spectrometry
-
Coon JJ, et al. (2005) Protein identification using sequential ion/ion reactions and tandem mass spectrometry. Proc Natl Acad Sci USA 102:9463-9468.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9463-9468
-
-
Coon, J.J.1
-
31
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross PL, et al. (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 3:1154-1169.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
-
32
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
Martens JHA, et al. (2005) The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J 24:800-812.
-
(2005)
EMBO J
, vol.24
, pp. 800-812
-
-
Martens, J.H.A.1
-
33
-
-
0030589678
-
X-inactivation and histone H4 acetylation in embryonic stem cells
-
Keohane AM, et al. (1996) X-inactivation and histone H4 acetylation in embryonic stem cells. Dev Biol 180:618-630.
-
(1996)
Dev Biol
, vol.180
, pp. 618-630
-
-
Keohane, A.M.1
-
35
-
-
5444263735
-
Epigenetic aspects of differentiation
-
Arney KL, Fisher AG (2004) Epigenetic aspects of differentiation. J Cell Sci 117:4355-4363.
-
(2004)
J Cell Sci
, vol.117
, pp. 4355-4363
-
-
Arney, K.L.1
Fisher, A.G.2
-
36
-
-
0036714189
-
Mitotic-specific methylation of histone H4 Lys 20 follows increased PR-Set7 expression and its localization to mitotic chromosomes
-
Rice JC, et al. (2002) Mitotic-specific methylation of histone H4 Lys 20 follows increased PR-Set7 expression and its localization to mitotic chromosomes. Genes Dev 16:2225-2230.
-
(2002)
Genes Dev
, vol.16
, pp. 2225-2230
-
-
Rice, J.C.1
-
37
-
-
0015029978
-
Methylation of lysine residues of histone fractions in synchronized mammalian cells
-
Shepherd GR, Hardin JM, Noland BJ (1971) Methylation of lysine residues of histone fractions in synchronized mammalian cells. Arch Biochem Biophys 143:1-5.
-
(1971)
Arch Biochem Biophys
, vol.143
, pp. 1-5
-
-
Shepherd, G.R.1
Hardin, J.M.2
Noland, B.J.3
-
38
-
-
0016638594
-
Kinetics of histone methylation in vivo and its relation to cell-cycle in Ehrlich ascites tumor-cells
-
Thomas G, Lange HW, Hempel K (1975) Kinetics of histone methylation in vivo and its relation to cell-cycle in Ehrlich ascites tumor-cells. Eur J Biochem 51:609-615.
-
(1975)
Eur J Biochem
, vol.51
, pp. 609-615
-
-
Thomas, G.1
Lange, H.W.2
Hempel, K.3
-
39
-
-
0035800524
-
Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor
-
Wang HB, et al. (2001) Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor. Science 293:853-857.
-
(2001)
Science
, vol.293
, pp. 853-857
-
-
Wang, H.B.1
-
40
-
-
23944435995
-
Methylation of histone H4 by arginine methyltransferase PRMT1 is essential in vivo for many subsequent histone modifications
-
Huang SM, Litt M, Felsenfeld G (2005) Methylation of histone H4 by arginine methyltransferase PRMT1 is essential in vivo for many subsequent histone modifications. Genes Dev 19:1885-1893.
-
(2005)
Genes Dev
, vol.19
, pp. 1885-1893
-
-
Huang, S.M.1
Litt, M.2
Felsenfeld, G.3
-
41
-
-
18444392703
-
PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin
-
Nishioka K, et al. (2002) PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin. Mol Cell 9:1201-1213.
-
(2002)
Mol Cell
, vol.9
, pp. 1201-1213
-
-
Nishioka, K.1
-
42
-
-
33746392927
-
Feeder-independent culture of human embryonic stem cells
-
Ludwig TE, et al. (2006) Feeder-independent culture of human embryonic stem cells. Nat Methods 3:637-646.
-
(2006)
Nat Methods
, vol.3
, pp. 637-646
-
-
Ludwig, T.E.1
-
43
-
-
18144370095
-
Serine 31 phosphorylation of histone variant H3.3 is specific to regions bordering centromeres in metaphase chromosomes
-
Hake SB, et al. (2005) Serine 31 phosphorylation of histone variant H3.3 is specific to regions bordering centromeres in metaphase chromosomes. Proc Natl Acad Sci USA 102:6344-6349.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6344-6349
-
-
Hake, S.B.1
-
44
-
-
34249022000
-
Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer
-
McAlister GC, et al. (2007) Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Anal Chem 79:3525-3534.
-
(2007)
Anal Chem
, vol.79
, pp. 3525-3534
-
-
McAlister, G.C.1
|