-
1
-
-
0037168637
-
Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex
-
Bae E., Calhoun V.C., Levine M., Lewis E.B., Drewell R.A. Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex. Proc. Natl. Acad. Sci. USA. 99:2002;16847-16852
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16847-16852
-
-
Bae, E.1
Calhoun, V.C.2
Levine, M.3
Lewis, E.B.4
Drewell, R.A.5
-
2
-
-
0345865009
-
GenBank: Update
-
Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Wheeler D.L. GenBank. update Nucleic Acids Res. 32:2004;D23-D26
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
3
-
-
0037172993
-
Methylation of histone H3 Lys 4 in coding regions of active genes
-
Bernstein B.E., Humphrey E.L., Erlich R.L., Schneider R., Bouman P., Liu J.S., Kouzarides T., Schreiber S.L. Methylation of histone H3 Lys 4 in coding regions of active genes. Proc. Natl. Acad. Sci. USA. 99:2002;8695-8700
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8695-8700
-
-
Bernstein, B.E.1
Humphrey, E.L.2
Erlich, R.L.3
Schneider, R.4
Bouman, P.5
Liu, J.S.6
Kouzarides, T.7
Schreiber, S.L.8
-
4
-
-
8444245244
-
Global nucleosome occupancy in yeast
-
Published online August 20, 2004.
-
Bernstein B.E., Liu C.L., Humphrey E.L., Perlstein E.O., Schreiber S.L. Global nucleosome occupancy in yeast. Genome Biol. 5:2004;R62. Published online August 20, 2004.
-
(2004)
Genome Biol.
, vol.5
, pp. 62
-
-
Bernstein, B.E.1
Liu, C.L.2
Humphrey, E.L.3
Perlstein, E.O.4
Schreiber, S.L.5
-
5
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette M., Kent W.J., Riemer C., Elnitski L., Smit A.F., Roskin K.M., Baertsch R., Rosenbloom K., Clawson H., Green E.D., et al. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14:2004;708-715
-
(2004)
Genome Res.
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smit, A.F.5
Roskin, K.M.6
Baertsch, R.7
Rosenbloom, K.8
Clawson, H.9
Green, E.D.10
-
6
-
-
2942691957
-
Antisense intergenic transcription in V(D)J recombination
-
Bolland D.J., Wood A.L., Johnston C.M., Bunting S.F., Morgan G., Chakalova L., Fraser P.J., Corcoran A.E. Antisense intergenic transcription in V(D)J recombination. Nat. Immunol. 5:2004;630-637
-
(2004)
Nat. Immunol.
, vol.5
, pp. 630-637
-
-
Bolland, D.J.1
Wood, A.L.2
Johnston, C.M.3
Bunting, S.F.4
Morgan, G.5
Chakalova, L.6
Fraser, P.J.7
Corcoran, A.E.8
-
7
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad B.M., Irizarry R.A., Astrand M., Speed T.P. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 19:2003;185-193
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
8
-
-
0042091987
-
A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus
-
Bulger M., Schubeler D., Bender M.A., Hamilton J., Farrell C.M., Hardison R.C., Groudine M. A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus. Mol. Cell. Biol. 23:2003;5234-5244
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 5234-5244
-
-
Bulger, M.1
Schubeler, D.2
Bender, M.A.3
Hamilton, J.4
Farrell, C.M.5
Hardison, R.C.6
Groudine, M.7
-
9
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
Cawley S., Bekiranov S., Ng H.H., Kapranov P., Sekinger E.A., Kampa D., Piccolboni A., Sementchenko V., Cheng J., Williams A.J., et al. Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell. 116:2004;499-509
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
Kapranov, P.4
Sekinger, E.A.5
Kampa, D.6
Piccolboni, A.7
Sementchenko, V.8
Cheng, J.9
Williams, A.J.10
-
10
-
-
2442695407
-
Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
-
Chambeyron S., Bickmore W.A. Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription. Genes Dev. 18:2004;1119-1130
-
(2004)
Genes Dev.
, vol.18
, pp. 1119-1130
-
-
Chambeyron, S.1
Bickmore, W.A.2
-
11
-
-
0036790977
-
Diversity, topographic differentiation, and positional memory in human fibroblasts
-
Chang H.Y., Chi J.T., Dudoit S., Bondre C., van de Rijn M., Botstein D., Brown P.O. Diversity, topographic differentiation, and positional memory in human fibroblasts. Proc. Natl. Acad. Sci. USA. 99:2002;12877-12882
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12877-12882
-
-
Chang, H.Y.1
Chi, J.T.2
Dudoit, S.3
Bondre, C.4
Van De Rijn, M.5
Botstein, D.6
Brown, P.O.7
-
12
-
-
1042278765
-
The history of cancer epigenetics
-
Feinberg A.P., Tycko B. The history of cancer epigenetics. Nat. Rev. Cancer. 4:2004;143-153
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 143-153
-
-
Feinberg, A.P.1
Tycko, B.2
-
15
-
-
4444258534
-
Chromatin architecture of the human genome: Gene-rich domains are enriched in open chromatin fibers
-
Gilbert N., Boyle S., Fiegler H., Woodfine K., Carter N.P., Bickmore W.A. Chromatin architecture of the human genome. gene-rich domains are enriched in open chromatin fibers Cell. 118:2004;555-566
-
(2004)
Cell
, vol.118
, pp. 555-566
-
-
Gilbert, N.1
Boyle, S.2
Fiegler, H.3
Woodfine, K.4
Carter, N.P.5
Bickmore, W.A.6
-
16
-
-
0033853988
-
Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus
-
Gribnau J., Diderich K., Pruzina S., Calzolari R., Fraser P. Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus. Mol. Cell. 5:2000;377-386
-
(2000)
Mol. Cell
, vol.5
, pp. 377-386
-
-
Gribnau, J.1
Diderich, K.2
Pruzina, S.3
Calzolari, R.4
Fraser, P.5
-
17
-
-
0038740693
-
Tails of intrigue: Phosphorylation of RNA polymerase II mediates histone methylation
-
Hampsey M., Reinberg D. Tails of intrigue. phosphorylation of RNA polymerase II mediates histone methylation Cell. 113:2003;429-432
-
(2003)
Cell
, vol.113
, pp. 429-432
-
-
Hampsey, M.1
Reinberg, D.2
-
19
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard T., Barker D., Birney E., Cameron G., Chen Y., Clark L., Cox T., Cuff J., Curwen V., Down T., et al. The Ensembl genome database project. Nucleic Acids Res. 30:2002;38-41
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
-
20
-
-
0035839136
-
Translating the histone code
-
Jenuwein T., Allis C.D. Translating the histone code. Science. 293:2001;1074-1080
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
21
-
-
12144287461
-
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
-
Kampa D., Cheng J., Kapranov P., Yamanaka M., Brubaker S., Cawley S., Drenkow J., Piccolboni A., Bekiranov S., Helt G., et al. Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res. 14:2004;331-342
-
(2004)
Genome Res.
, vol.14
, pp. 331-342
-
-
Kampa, D.1
Cheng, J.2
Kapranov, P.3
Yamanaka, M.4
Brubaker, S.5
Cawley, S.6
Drenkow, J.7
Piccolboni, A.8
Bekiranov, S.9
Helt, G.10
-
22
-
-
0037012881
-
Large-scale transcriptional activity in chromosomes 21 and 22
-
Kapranov P., Cawley S.E., Drenkow J., Bekiranov S., Strausberg R.L., Fodor S.P., Gingeras T.R. Large-scale transcriptional activity in chromosomes 21 and 22. Science. 296:2002;916-919
-
(2002)
Science
, vol.296
, pp. 916-919
-
-
Kapranov, P.1
Cawley, S.E.2
Drenkow, J.3
Bekiranov, S.4
Strausberg, R.L.5
Fodor, S.P.6
Gingeras, T.R.7
-
23
-
-
0036079158
-
The human genome browser at UCSC
-
Kent W.J., Sugnet C.W., Furey T.S., Roskin K.M., Pringle T.H., Zahler A.M., Haussler D. The human genome browser at UCSC. Genome Res. 12:2002;996-1006
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
24
-
-
0038115063
-
Organizing axes in time and space; 25 years of colinear tinkering
-
Kmita M., Duboule D. Organizing axes in time and space; 25 years of colinear tinkering. Science. 301:2003;331-333
-
(2003)
Science
, vol.301
, pp. 331-333
-
-
Kmita, M.1
Duboule, D.2
-
25
-
-
0037524702
-
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: Linking transcriptional elongation to histone methylation
-
Krogan N.J., Dover J., Wood A., Schneider J., Heidt J., Boateng M.A., Dean K., Ryan O.W., Golshani A., Johnston M., et al. The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p. linking transcriptional elongation to histone methylation Mol. Cell. 11:2003;721-729
-
(2003)
Mol. Cell
, vol.11
, pp. 721-729
-
-
Krogan, N.J.1
Dover, J.2
Wood, A.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Dean, K.7
Ryan, O.W.8
Golshani, A.9
Johnston, M.10
-
26
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genome-wide
-
Lee C.K., Shibata Y., Rao B., Strahl B.D., Lieb J.D. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat. Genet. 36:2004;900-905
-
(2004)
Nat. Genet.
, vol.36
, pp. 900-905
-
-
Lee, C.K.1
Shibata, Y.2
Rao, B.3
Strahl, B.D.4
Lieb, J.D.5
-
27
-
-
2442454683
-
Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome
-
Liang G., Lin J.C., Wei V., Yoo C., Cheng J.C., Nguyen C.T., Weisenberger D.J., Egger G., Takai D., Gonzales F.A., Jones P.A. Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome. Proc. Natl. Acad. Sci. USA. 101:2004;7357-7362
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7357-7362
-
-
Liang, G.1
Lin, J.C.2
Wei, V.3
Yoo, C.4
Cheng, J.C.5
Nguyen, C.T.6
Weisenberger, D.J.7
Egger, G.8
Takai, D.9
Gonzales, F.A.10
Jones, P.A.11
-
28
-
-
0035964869
-
Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus
-
Litt M.D., Simpson M., Gaszner M., Allis C.D., Felsenfeld G. Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus. Science. 293:2001;2453-2455
-
(2001)
Science
, vol.293
, pp. 2453-2455
-
-
Litt, M.D.1
Simpson, M.2
Gaszner, M.3
Allis, C.D.4
Felsenfeld, G.5
-
29
-
-
0037812450
-
Development and validation of a T7 based linear amplification for genomic DNA
-
Liu C.L., Schreiber S.L., Bernstein B.E. Development and validation of a T7 based linear amplification for genomic DNA. BMC Genomics. 4:2003;19
-
(2003)
BMC Genomics
, vol.4
, pp. 19
-
-
Liu, C.L.1
Schreiber, S.L.2
Bernstein, B.E.3
-
30
-
-
1242342240
-
Histone H3.3 is enriched in covalent modifications associated with active chromatin
-
McKittrick E., Gafken P.R., Ahmad K., Henikoff S. Histone H3.3 is enriched in covalent modifications associated with active chromatin. Proc. Natl. Acad. Sci. USA. 101:2004;1525-1530
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1525-1530
-
-
McKittrick, E.1
Gafken, P.R.2
Ahmad, K.3
Henikoff, S.4
-
31
-
-
18744373853
-
MLL targets SET domain methyltransferase activity to Hox gene promoters
-
Milne T.A., Briggs S.D., Brock H.W., Martin M.E., Gibbs D., Allis C.D., Hess J.L. MLL targets SET domain methyltransferase activity to Hox gene promoters. Mol. Cell. 10:2002;1107-1117
-
(2002)
Mol. Cell
, vol.10
, pp. 1107-1117
-
-
Milne, T.A.1
Briggs, S.D.2
Brock, H.W.3
Martin, M.E.4
Gibbs, D.5
Allis, C.D.6
Hess, J.L.7
-
32
-
-
18744410349
-
ALL-1 is a histone methyltransferase that assembles a supercomplex of proteins involved in transcriptional regulation
-
Nakamura T., Mori T., Tada S., Krajewski W., Rozovskaia T., Wassell R., Dubois G., Mazo A., Croce C.M., Canaani E. ALL-1 is a histone methyltransferase that assembles a supercomplex of proteins involved in transcriptional regulation. Mol. Cell. 10:2002;1119-1128
-
(2002)
Mol. Cell
, vol.10
, pp. 1119-1128
-
-
Nakamura, T.1
Mori, T.2
Tada, S.3
Krajewski, W.4
Rozovskaia, T.5
Wassell, R.6
Dubois, G.7
Mazo, A.8
Croce, C.M.9
Canaani, E.10
-
33
-
-
0344022572
-
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
Ng H.H., Robert F., Young R.A., Struhl K. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell. 11:2003;709-719
-
(2003)
Mol. Cell
, vol.11
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
34
-
-
0036841029
-
Transcription through intergenic chromosomal memory elements of the Drosophila bithorax complex correlates with an epigenetic switch
-
Rank G., Prestel M., Paro R. Transcription through intergenic chromosomal memory elements of the Drosophila bithorax complex correlates with an epigenetic switch. Mol. Cell. Biol. 22:2002;8026-8034
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 8026-8034
-
-
Rank, G.1
Prestel, M.2
Paro, R.3
-
35
-
-
3543008920
-
High-resolution genome-wide mapping of histone modifications
-
Roh T.Y., Ngau W.C., Cui K., Landsman D., Zhao K. High-resolution genome-wide mapping of histone modifications. Nat. Biotechnol. 22:2004;1013-1016
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1013-1016
-
-
Roh, T.Y.1
Ngau, W.C.2
Cui, K.3
Landsman, D.4
Zhao, K.5
-
36
-
-
0037179716
-
Active genes are tri-methylated at K4 of histone H3
-
Santos-Rosa H., Schneider R., Bannister A.J., Sherriff J., Bernstein B.E., Emre N.C., Schreiber S.L., Mellor J., Kouzarides T. Active genes are tri-methylated at K4 of histone H3. Nature. 419:2002;407-411
-
(2002)
Nature
, vol.419
, pp. 407-411
-
-
Santos-Rosa, H.1
Schneider, R.2
Bannister, A.J.3
Sherriff, J.4
Bernstein, B.E.5
Emre, N.C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
37
-
-
0345708105
-
Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin
-
Santos-Rosa H., Schneider R., Bernstein B.E., Karabetsou N., Morillon A., Weise C., Schreiber S.L., Mellor J., Kouzarides T. Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin. Mol. Cell. 12:2003;1325-1332
-
(2003)
Mol. Cell
, vol.12
, pp. 1325-1332
-
-
Santos-Rosa, H.1
Schneider, R.2
Bernstein, B.E.3
Karabetsou, N.4
Morillon, A.5
Weise, C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
38
-
-
1342268289
-
Histone H3 lysine 4 methylation patterns in higher eukaryotic genes
-
Schneider R., Bannister A.J., Myers F.A., Thorne A.W., Crane-Robinson C., Kouzarides T. Histone H3 lysine 4 methylation patterns in higher eukaryotic genes. Nat. Cell Biol. 6:2004;73-77
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 73-77
-
-
Schneider, R.1
Bannister, A.J.2
Myers, F.A.3
Thorne, A.W.4
Crane-Robinson, C.5
Kouzarides, T.6
-
39
-
-
0037074010
-
Signaling network model of chromatin
-
Schreiber S.L., Bernstein B.E. Signaling network model of chromatin. Cell. 111:2002;771-778
-
(2002)
Cell
, vol.111
, pp. 771-778
-
-
Schreiber, S.L.1
Bernstein, B.E.2
-
40
-
-
2642570305
-
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
-
Schubeler D., MacAlpine D.M., Scalzo D., Wirbelauer C., Kooperberg C., van Leeuwen F., Gottschling D.E., O'Neill L.P., Turner B.M., Delrow J., et al. The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes Dev. 18:2004;1263-1271
-
(2004)
Genes Dev.
, vol.18
, pp. 1263-1271
-
-
Schubeler, D.1
MacAlpine, D.M.2
Scalzo, D.3
Wirbelauer, C.4
Kooperberg, C.5
Van Leeuwen, F.6
Gottschling, D.E.7
O'Neill, L.P.8
Turner, B.M.9
Delrow, J.10
-
41
-
-
5444225805
-
Elongation by RNA polymerase II: The short and long of it
-
Sims R.J. 3rd, Belotserkovskaya R., Reinberg D. Elongation by RNA polymerase II. the short and long of it Genes Dev. 18:2004;2437-2468
-
(2004)
Genes Dev.
, vol.18
, pp. 2437-2468
-
-
Sims III, R.J.1
Belotserkovskaya, R.2
Reinberg, D.3
-
42
-
-
1642618325
-
Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex
-
Smith S.T., Petruk S., Sedkov Y., Cho E., Tillib S., Canaani E., Mazo A. Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex. Nat. Cell Biol. 6:2004;162-167
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 162-167
-
-
Smith, S.T.1
Petruk, S.2
Sedkov, Y.3
Cho, E.4
Tillib, S.5
Canaani, E.6
Mazo, A.7
-
43
-
-
0036850325
-
Cellular memory and the histone code
-
Turner B.M. Cellular memory and the histone code. Cell. 111:2002;285-291
-
(2002)
Cell
, vol.111
, pp. 285-291
-
-
Turner, B.M.1
-
44
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston R.H., Lindblad-Toh K., Birney E., Rogers J., Abril J.F., Agarwal P., Agarwala R., Ainscough R., Alexandersson M., An P., et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420:2002;520-562
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
-
45
-
-
0033569641
-
Epigenetics: Regulation through repression
-
Wolffe A.P., Matzke M.A. Epigenetics. regulation through repression Science. 286:1999;481-486
-
(1999)
Science
, vol.286
, pp. 481-486
-
-
Wolffe, A.P.1
Matzke, M.A.2
-
46
-
-
0028869112
-
Altered Hox expression and segmental identity in Mll-mutant mice
-
Yu B.D., Hess J.L., Horning S.E., Brown G.A., Korsmeyer S.J. Altered Hox expression and segmental identity in Mll-mutant mice. Nature. 378:1995;505-508
-
(1995)
Nature
, vol.378
, pp. 505-508
-
-
Yu, B.D.1
Hess, J.L.2
Horning, S.E.3
Brown, G.A.4
Korsmeyer, S.J.5
|