메뉴 건너뛰기




Volumn 192, Issue 2, 2012, Pages 533-598

Genomic variation in natural populations of Drosophila melanogaster

(18)  Langley, Charles H a   Stevens, Kristian a   Cardeno, Charis a   Lee, Yuh Chwen G a   Schrider, Daniel R b,c   Pool, John E a,k   Langley, Sasha A d   Suarez, Charlyn a   Corbett Detig, Russell B a,l   Kolaczkowski, Bryan e   Fang, Shu h   Nista, Phillip M b   Holloway, Alisha K f   Kern, Andrew D g   Dewey, Colin N i   Song, Yun S j   Hahn, Matthew W b,c   Begun, David J a  


Author keywords

[No Author keywords available]

Indexed keywords

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; AUTOSOME; CENTROMERE; CHROMATIN; COPY NUMBER VARIATION; DNA POLYMORPHISM; DROSOPHILA MELANOGASTER; EPIGENETICS; EXON; GENE DELETION; GENE LINKAGE DISEQUILIBRIUM; GENE SEQUENCE; GENE STRUCTURE; GENETIC ASSOCIATION; GENETIC LINKAGE; GENETIC RECOMBINATION; GENETIC VARIABILITY; HETEROZYGOSITY; INSECT GENOME; NONHUMAN; PRIORITY JOURNAL; TELOMERE; TRANSCRIPTION INITIATION;

EID: 84866081815     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.112.142018     Document Type: Article
Times cited : (254)

References (238)
  • 2
    • 0001263587 scopus 로고
    • Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster
    • Aguadé, M., N. Miyashita, and C. H. Langley, 1989 Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster. Genetics 122: 607-615.
    • (1989) Genetics , vol.122 , pp. 607-615
    • Aguadé, M.1    Miyashita, N.2    Langley, C.H.3
  • 3
    • 0028321715 scopus 로고
    • Singlestrand conformation polymorphism analysis coupled with stratified DNA sequencing reveals reduced sequence variation in the su (s) and su(wa) regions of the Drosophila melanogaster X chromosome
    • Aguadé, M.W., Meyers, A. D. Long, and C. H. Langley, 1994 Singlestrand conformation polymorphism analysis coupled with stratified DNA sequencing reveals reduced sequence variation in the su (s) and su(wa) regions of the Drosophila melanogaster X chromosome. Proc. Natl. Acad. Sci. USA 91: 4658-4662.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 4658-4662
    • Aguadé, M.W.1    Meyers, A.2    Long, D.3    Langley, C.H.4
  • 4
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
    • Akashi, H., 1995 Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
    • (1995) Genetics , vol.139 , pp. 1067-1076
    • Akashi, H.1
  • 5
    • 0029985179 scopus 로고    scopus 로고
    • Molecular evolution between Drosophila melanogaster and D. simulans: Reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster
    • Akashi, H., 1996 Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster. Genetics 144: 1297-1307.
    • (1996) Genetics , vol.144 , pp. 1297-1307
    • Akashi, H.1
  • 6
    • 0037334946 scopus 로고    scopus 로고
    • Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament
    • Alexeev, A., A. Mazin, and S. C. Kowalczykowski, 2003 Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament. Nat. Struct. Biol. 10: 182-186.
    • (2003) Nat. Struct. Biol , vol.10 , pp. 182-186
    • Alexeev, A.1    Mazin, A.2    Kowalczykowski, S.C.3
  • 7
    • 0035107550 scopus 로고    scopus 로고
    • Contrasting patterns of X-Linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans
    • Andolfatto, P., 2001 Contrasting patterns of X-Linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 18: 279-290.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 279-290
    • Andolfatto, P.1
  • 8
    • 38849194141 scopus 로고    scopus 로고
    • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    • Andolfatto, P., 2007 Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome. Genome Res. 17: 1755-1762.
    • (2007) Genome Res , vol.17 , pp. 1755-1762
    • Andolfatto, P.1
  • 9
    • 0034086306 scopus 로고    scopus 로고
    • Molecular variation at the In (2L)t proximal breakpoint site in natural populations of Drosophila melanogaster and D. simulans
    • Andolfatto, P., and M. Kreitman, 2000 Molecular variation at the In (2L)t proximal breakpoint site in natural populations of Drosophila melanogaster and D. simulans. Genetics 154: 1681-1691.
    • (2000) Genetics , vol.154 , pp. 1681-1691
    • Andolfatto, P.1    Kreitman, M.2
  • 10
    • 0032713910 scopus 로고    scopus 로고
    • Unusual haplotype structure at the proximal breakpoint of In(2L)t in a natural population of Drosophila melanogaster
    • Andolfatto, P., J. D. Wall, and M. Kreitman, 1999 Unusual haplotype structure at the proximal breakpoint of In(2L)t in a natural population of Drosophila melanogaster. Genetics 153: 1297-1311.
    • (1999) Genetics , vol.153 , pp. 1297-1311
    • Andolfatto, P.1    Wall, J.D.2    Kreitman, M.3
  • 11
    • 0035108485 scopus 로고    scopus 로고
    • Inversion polymorphisms and nucleotide variability in Drosophila
    • Andolfatto, P., F. Depaulis, and A. Navarro, 2001 Inversion polymorphisms and nucleotide variability in Drosophila. Genet. Res. 77: 1-8.
    • (2001) Genet. Res , vol.77 , pp. 1-8
    • Andolfatto, P.1    Depaulis, F.2    Navarro, A.3
  • 12
    • 79954988547 scopus 로고    scopus 로고
    • Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species
    • Andolfatto, P., K. M. Wong, and D. Bachtrog, 2011 Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species. Genome Biol. Evol. 3: 114-128.
    • (2011) Genome Biol. Evol , vol.3 , pp. 114-128
    • Andolfatto, P.1    Wong, K.M.2    Bachtrog, D.3
  • 13
    • 0024058618 scopus 로고
    • The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence
    • Aquadro, C. F., K. M. Lado, and W. A. Noon, 1988 The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence. Genetics 119: 875-888.
    • (1988) Genetics , vol.119 , pp. 875-888
    • Aquadro, C.F.1    Lado, K.M.2    Noon, W.A.3
  • 14
    • 0026697697 scopus 로고
    • Patterns of naturally occurring restriction map variation, dopa decarboxylase activity variation and linkage disequilibrium in the Ddc gene region of Drosophila melanogaster
    • Aquadro, C. F., R. M. Jennings, M. M. Bland, C. C. Laurie, and C. H. Langley, 1992 Patterns of naturally occurring restriction map variation, dopa decarboxylase activity variation and linkage disequilibrium in the Ddc gene region of Drosophila melanogaster. Genetics 132: 443-452.
    • (1992) Genetics , vol.132 , pp. 443-452
    • Aquadro, C.F.1    Jennings, R.M.2    Bland, M.M.3    Laurie, C.C.4    Langley, C.H.5
  • 15
    • 0036197624 scopus 로고    scopus 로고
    • Chromosomal inversion polymorphism in Afrotropical populations of Drosophila melanogaster
    • Aulard, S., J. R. David, and F. Lemeunier, 2002 Chromosomal inversion polymorphism in Afrotropical populations of Drosophila melanogaster. Genet. Res. 79: 49-63.
    • (2002) Genet. Res , vol.79 , pp. 49-63
    • Aulard, S.1    David, J.R.2    Lemeunier, F.3
  • 16
  • 17
    • 0037567638 scopus 로고    scopus 로고
    • Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila
    • Bachtrog, D., 2003 Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila. Nat. Genet. 34: 215-219.
    • (2003) Nat. Genet , vol.34 , pp. 215-219
    • Bachtrog, D.1
  • 18
    • 25844504316 scopus 로고    scopus 로고
    • Sex chromosome evolution: Molecular aspects of Y-chromosome degeneration in Drosophila
    • Bachtrog, D., 2005 Sex chromosome evolution: molecular aspects of Y-chromosome degeneration in Drosophila. Genome Res. 15: 1393-1401.
    • (2005) Genome Res , vol.15 , pp. 1393-1401
    • Bachtrog, D.1
  • 19
    • 0037149526 scopus 로고    scopus 로고
    • Reduced adaptation of a non-recombining neo-Y chromosome
    • Bachtrog, D., and B. Charlesworth, 2002 Reduced adaptation of a non-recombining neo-Y chromosome. Nature 416: 323-326.
    • (2002) Nature , vol.416 , pp. 323-326
    • Bachtrog, D.1    Charlesworth, B.2
  • 20
    • 0037547157 scopus 로고    scopus 로고
    • A rapidly evolving MYB-related protein causes species isolation in Drosophila
    • Barbash, D. A., D. F. Siino, M. Aaron, and J. Roote, 2003 A rapidly evolving MYB-related protein causes species isolation in Drosophila. Proc. Natl. Acad. Sci. USA 100: 5302-5307.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 5302-5307
    • Barbash, D.A.1    Siino, D.F.2    Aaron, M.3    Roote, J.4
  • 21
    • 62349104354 scopus 로고    scopus 로고
    • Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes
    • Bartolomé, C., X. Bello, and X. Maside, 2009 Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes. Genome Biol. 10: R22.
    • (2009) Genome Biol , vol.10
    • Bartolomé, C.1    Bello, X.2    Maside, X.3
  • 22
    • 76749170346 scopus 로고    scopus 로고
    • PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice
    • Baudat, F., J. Buard, C. Grey, A. Fledel-Alon, C. Ober et al., 2010 PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice. Science 327: 836-840.
    • (2010) Science , vol.327 , pp. 836-840
    • Baudat, F.1    Buard, J.2    Grey, C.3    Fledel-Alon, A.4    Ober, C.5
  • 23
    • 33845868780 scopus 로고    scopus 로고
    • Recurrent positive selection at Bgcn, a key determinant of germ line differentiation, does not appear to be driven by simple coevolution with its partner protein Bam
    • Bauer DuMont, V. L., H. A. Flores, M. H. Wright, and C. F. Aquadro, 2007 Recurrent positive selection at Bgcn, a key determinant of germ line differentiation, does not appear to be driven by simple coevolution with its partner protein Bam. Mol. Biol. Evol. 24: 182-191.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 182-191
    • Bauer, M.V.L.1    Flores, H.A.2    Wright, M.H.3    Aquadro, C.F.4
  • 24
    • 0030340053 scopus 로고    scopus 로고
    • Population genetics of silent and replacement variation in Drosophila simulans and D. melanogaster: X/autosome differences?
    • Begun, D. J., 1996 Population genetics of silent and replacement variation in Drosophila simulans and D. melanogaster: X/autosome differences? Mol. Biol. Evol. 13: 1405-1407.
    • (1996) Mol. Biol. Evol , vol.13 , pp. 1405-1407
    • Begun, D.J.1
  • 25
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • Begun, D. J., and C. F. Aquadro, 1992 Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 26
    • 0027374393 scopus 로고
    • African and North American populations of Drosophila melanogaster are very different at the DNA level
    • Begun, D. J., and C. F. Aquadro, 1993 African and North American populations of Drosophila melanogaster are very different at the DNA level. Nature 365: 548-550.
    • (1993) Nature , vol.365 , pp. 548-550
    • Begun, D.J.1    Aquadro, C.F.2
  • 27
    • 35948940895 scopus 로고    scopus 로고
    • Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
    • Begun, D. J., A. K. Holloway, K. Stevens, L. W. Hillier, Y.-P. Poh et al., 2007 Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol. 5: e310.
    • (2007) PLoS Biol , vol.5
    • Begun, D.J.1    Holloway, A.K.2    Stevens, K.3    Hillier, L.W.4    Poh, Y.-P.5
  • 28
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y., and D. Yekutieli, 2001 The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29: 1165-1188.
    • (2001) Ann. Stat , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 29
    • 55549089660 scopus 로고    scopus 로고
    • Accurate whole human genome sequencing using reversible terminator chemistry
    • Bentley, D. R., S. Balasubramanian, H. P. Swerdlow, G. P. Smith, J. Milton et al., 2008 Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456: 53-59.
    • (2008) Nature , vol.456 , pp. 53-59
    • Bentley, D.R.1    Balasubramanian, S.2    Swerdlow, H.P.3    Smith, G.P.4    Milton, J.5
  • 30
    • 77957579303 scopus 로고    scopus 로고
    • PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans
    • Berg, I. L., R. Neumann, K.-W. G. Lam, S. Sarbajna, L. Odenthal-Hesse et al., 2010 PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans. Nat. Genet. 42: 859-863.
    • (2010) Nat. Genet , vol.42 , pp. 859-863
    • Berg, I.L.1    Neumann, R.2    Lam K.-W., G.3    Sarbajna, S.4    Odenthalhesse, L.5
  • 31
    • 0037108764 scopus 로고    scopus 로고
    • Linkage limits the power of natural selection in Drosophila
    • Betancourt, A. J., and D. C. Presgraves, 2002 Linkage limits the power of natural selection in Drosophila. Proc. Natl. Acad. Sci. USA 99: 13616-13620.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 13616-13620
    • Betancourt, A.J.1    Presgraves, D.C.2
  • 32
    • 11244324004 scopus 로고    scopus 로고
    • A pseudohitchhiking model of X vs. autosomal diversity
    • Betancourt, A. J., Y. Kim, and H. A. Orr, 2004 A pseudohitchhiking model of X vs. autosomal diversity. Genetics 168: 2261-2269.
    • (2004) Genetics , vol.168 , pp. 2261-2269
    • Betancourt, A.J.1    Kim, Y.2    Orr, H.A.3
  • 33
    • 67149120080 scopus 로고    scopus 로고
    • Reduced effectiveness of selection caused by a lack of recombination
    • Betancourt, A. J., J. J. Welch, and B. Charlesworth, 2009 Reduced effectiveness of selection caused by a lack of recombination. Curr. Biol. 19: 655-660.
    • (2009) Curr. Biol , vol.19 , pp. 655-660
    • Betancourt, A.J.1    Welch, J.J.2    Charlesworth, B.3
  • 34
    • 0019426751 scopus 로고
    • Cloning of DNA sequences from the white locus of D. melanogaster by a novel and general method
    • Bingham, P. M., R. Levis, and G. M. Rubin, 1981 Cloning of DNA sequences from the white locus of D. melanogaster by a novel and general method. Cell 25: 693-704.
    • (1981) Cell , vol.25 , pp. 693-704
    • Bingham, P.M.1    Levis, R.2    Rubin, G.M.3
  • 35
    • 79961170861 scopus 로고    scopus 로고
    • How dormant origins promote complete genome replication
    • Blow, J. J., X. Q. Ge, and D. A. Jackson, 2011 How dormant origins promote complete genome replication. Trends Biochem. Sci. 36: 405-414.
    • (2011) Trends Biochem. Sci , vol.36 , pp. 405-414
    • Blow, J.J.1    Ge, X.Q.2    Jackson, D.A.3
  • 36
    • 78650630076 scopus 로고    scopus 로고
    • Evolutionary dynamics of transposable elements in a small RNA world
    • Blumenstiel, J. P., 2011 Evolutionary dynamics of transposable elements in a small RNA world. Trends Genet. 27: 23-31.
    • (2011) Trends Genet , vol.27 , pp. 23-31
    • Blumenstiel, J.P.1
  • 38
    • 0029036829 scopus 로고
    • The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
    • Braverman, J. M., R. R. Hudson, N. L. Kaplan, C. H. Langley, and W. Stephan, 1995 The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140: 783-796.
    • (1995) Genetics , vol.140 , pp. 783-796
    • Braverman, J.M.1    Hudson, R.R.2    Kaplan, N.L.3    Langley, C.H.4    Stephan, W.5
  • 39
    • 23344443691 scopus 로고    scopus 로고
    • DNA sequence polymorphism and divergence at the erect wing and suppressor of sable loci of Drosophila melanogaster and D. simulans
    • Braverman, J. M., B. P. Lazzaro, M. Aguadé, and C. H. Langley, 2005 DNA sequence polymorphism and divergence at the erect wing and suppressor of sable loci of Drosophila melanogaster and D. simulans. Genetics 170: 1153-1165.
    • (2005) Genetics , vol.170 , pp. 1153-1165
    • Braverman, J.M.1    Lazzaro, B.P.2    Aguadé, M.3    Langley, C.H.4
  • 40
    • 33751577950 scopus 로고    scopus 로고
    • Two Dobzhansky-Muller genes interact to cause hybrid lethality in Drosophila
    • Brideau, N. J., H. A. Flores, J. Wang, S. Maheshwari, X. Wang et al., 2006 Two Dobzhansky-Muller genes interact to cause hybrid lethality in Drosophila. Science 314: 1292-1295.
    • (2006) Science , vol.314 , pp. 1292-1295
    • Brideau, N.J.1    Flores, H.A.2    Wang, J.3    Maheshwari, S.4    Wang, X.5
  • 41
    • 0000842626 scopus 로고
    • The Bar "gene" a duplication
    • Bridges, C. B., 1936 The Bar "gene" a duplication. Science 83: 210-211.
    • (1936) Science , vol.83 , pp. 210-211
    • Bridges, C.B.1
  • 42
    • 0025941139 scopus 로고
    • The selection-mutation-drift theory of synonymous codon usage
    • Bulmer, M., 1991 The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
    • (1991) Genetics , vol.129 , pp. 897-907
    • Bulmer, M.1
  • 43
    • 59249100200 scopus 로고    scopus 로고
    • Pervasive hitchhiking at coding and regulatory sites in humans
    • Cai, J. J., J.M. Macpherson, G. Sella, and D. A. Petrov, 2009 Pervasive hitchhiking at coding and regulatory sites in humans. PLoS Genet. 5: e1000336.
    • (2009) PLoS Genet , vol.5
    • Cai, J.J.1    Macpherson, J.M.2    Sella, G.3    Petrov, D.A.4
  • 44
    • 0038708532 scopus 로고    scopus 로고
    • Genetic differentiation between American and European Drosophila melanogaster populations could be attributed to admixture of African alleles
    • Caracristi, G., and C. Schlötterer, 2003 Genetic differentiation between American and European Drosophila melanogaster populations could be attributed to admixture of African alleles. Mol. Biol. Evol. 20: 792-799.
    • (2003) Mol. Biol. Evol , vol.20 , pp. 792-799
    • Caracristi, G.1    Schlötterer, C.2
  • 45
    • 81755187301 scopus 로고    scopus 로고
    • Drosophila duplication hotspots are associated with latereplicating regions of the genome
    • Cardoso-Moreira, M., J. J. Emerson, A. G. Clark, and M. Long, 2011 Drosophila duplication hotspots are associated with latereplicating regions of the genome. PLoS Genet. 7: e1002340.
    • (2011) PLoS Genet , vol.7
    • Cardoso-Moreira, M.1    Emerson, J.J.2    Clark, A.G.3    Long, M.4
  • 46
    • 77953290380 scopus 로고    scopus 로고
    • Mutational bias shaping fly copy number variation: Implications for genome evolution
    • Cardoso-Moreira, M. M., and M. Long, 2010 Mutational bias shaping fly copy number variation: implications for genome evolution. Trends Genet. 26: 243-247.
    • (2010) Trends Genet , vol.26 , pp. 243-247
    • Cardoso-Moreira, M.M.1    Long, M.2
  • 47
    • 0004181201 scopus 로고
    • W. H. Freeman, San Francisco. Chambers, J. M., and T. J. Hastie, 1992 Statistical Models. Wadsworth & Brooks/Cole, Pacific Grove, CA
    • Cavalli-Sforza, L. L., and W. F. Bodmer, 1971 The Genetics of Human Populations. W. H. Freeman, San Francisco. Chambers, J. M., and T. J. Hastie, 1992 Statistical Models. Wadsworth & Brooks/Cole, Pacific Grove, CA.
    • (1971) The Genetics of Human Populations
    • Cavalli-Sforza, L.L.1    Bodmer, W.F.2
  • 48
    • 0028222304 scopus 로고
    • The effect of background selection against deleterious mutations on weakly selected, linked variants
    • Charlesworth, B., 1994 The effect of background selection against deleterious mutations on weakly selected, linked variants. Genet. Res. 63: 213-227.
    • (1994) Genet. Res , vol.63 , pp. 213-227
    • Charlesworth, B.1
  • 49
    • 0029800853 scopus 로고    scopus 로고
    • Background selection and patterns of genetic diversity in Drosophila melanogaster
    • Charlesworth, B., 1996 Background selection and patterns of genetic diversity in Drosophila melanogaster. Genet. Res. 68: 131-149.
    • (1996) Genet. Res , vol.68 , pp. 131-149
    • Charlesworth, B.1
  • 50
    • 0035038057 scopus 로고    scopus 로고
    • The effect of life-history and mode of inheritance on neutral genetic variability
    • Charlesworth, B., 2001 The effect of life-history and mode of inheritance on neutral genetic variability. Genet. Res. 77: 153-166.
    • (2001) Genet. Res , vol.77 , pp. 153-166
    • Charlesworth, B.1
  • 51
    • 0022571508 scopus 로고
    • The evolution of restricted recombination and the accumulation of repeated DNA sequences
    • Charlesworth, B., C. H. Langley, and W. Stephan, 1986 The evolution of restricted recombination and the accumulation of repeated DNA sequences. Genetics 112: 947-962.
    • (1986) Genetics , vol.112 , pp. 947-962
    • Charlesworth, B.1    Langley, C.H.2    Stephan, W.3
  • 52
    • 0023501735 scopus 로고
    • The relative rates of evolution of sex chromosomes and autosomes
    • Charlesworth, B., J. A. Coyne, and N. H. Barton, 1987 The relative rates of evolution of sex chromosomes and autosomes. Am. Nat. 130: 113-146.
    • (1987) Am. Nat , vol.130 , pp. 113-146
    • Charlesworth, B.1    Coyne, J.A.2    Barton, N.H.3
  • 53
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • Charlesworth, B., M. T. Morgan, and D. Charlesworth, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 54
    • 0028863202 scopus 로고
    • The pattern of neutral molecular variation under the background selection model
    • Charlesworth, D., B. Charlesworth, and M. T. Morgan, 1995 The pattern of neutral molecular variation under the background selection model. Genetics 141: 1619-1632.
    • (1995) Genetics , vol.141 , pp. 1619-1632
    • Charlesworth, D.1    Charlesworth, B.2    Morgan, M.T.3
  • 55
    • 44649110284 scopus 로고    scopus 로고
    • The McDonald-Kreitman test and slightly deleterious mutations
    • Charlesworth, J., and A. Eyre-Walker, 2008 The McDonald-Kreitman test and slightly deleterious mutations. Mol. Biol. Evol. 25: 1007-1015.
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1007-1015
    • Charlesworth, J.1    Eyre-Walker, A.2
  • 56
    • 84941197588 scopus 로고
    • The equivalence of generalized least squares and maximun likelihood estimates in the exponential family
    • Charnes, A., E. L. Frome, and P. L. Yu, 1976 The equivalence of generalized least squares and maximun likelihood estimates in the exponential family. J. Am. Stat. Assoc. 71: 169-171.
    • (1976) J. Am. Stat. Assoc , vol.71 , pp. 169-171
    • Charnes, A.1    Frome, E.L.2    Yu, P.L.3
  • 57
    • 79551596885 scopus 로고    scopus 로고
    • The transcriptional diversity of 25 Drosophila cell lines
    • Cherbas, L., A. Willingham, D. Zhang, L. Yang, Y. Zou et al., 2011 The transcriptional diversity of 25 Drosophila cell lines. Genome Res. 21: 301-314.
    • (2011) Genome Res , vol.21 , pp. 301-314
    • Cherbas, L.1    Willingham, A.2    Zhang, D.3    Yang, L.4    Zou, Y.5
  • 58
    • 79952314830 scopus 로고    scopus 로고
    • Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair
    • Chiolo, I., A. Minoda, S. U. Colmenares, A. Polyzos, S. V. Costes et al., 2011 Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair. Cell 144: 732-744.
    • (2011) Cell , vol.144 , pp. 732-744
    • Chiolo, I.1    Minoda, A.2    Colmenares, S.U.3    Polyzos, A.4    Costes, S.V.5
  • 59
    • 84936916896 scopus 로고
    • Robust locally weighted regression and smoothing scatterplots
    • Cleveland, W. S., 1979 Robust locally weighted regression and smoothing scatterplots. J. Am. Stat. Assoc. 74: 829.
    • (1979) J. Am. Stat. Assoc , vol.74 , pp. 829
    • Cleveland, W.S.1
  • 60
    • 77954498909 scopus 로고    scopus 로고
    • Genetic variation in senescence marker protein-30 is associated with natural variation in cold tolerance in Drosophila
    • Clowers, K. J., R. F. Lyman, T. F. C. Mackay, and T. J. Morgan, 2010 Genetic variation in senescence marker protein-30 is associated with natural variation in cold tolerance in Drosophila. Genet. Res. 92: 103-113.
    • (2010) Genet. Res , vol.92 , pp. 103-113
    • Clowers, K.J.1    Lyman, R.F.2    Mackay, T.F.C.3    Morgan, T.J.4
  • 62
    • 34247877877 scopus 로고    scopus 로고
    • QuantiSNP: An objective Bayes hidden-Markov model to detect and accurately map copy number variation using SNP genotyping data
    • Colella, S., C. Yau, J. M. Taylor, G. Mirza, H. Butler et al., 2007 QuantiSNP: an objective Bayes hidden-Markov model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Res. 35: 2013-2025.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2013-2025
    • Colella, S.1    Yau, C.2    Taylor, J.M.3    Mirza, G.4    Butler, H.5
  • 63
    • 77951700086 scopus 로고    scopus 로고
    • Mutation spectrum revealed by breakpoint sequencing of human germline CNVs
    • Conrad, D. F., C. Bird, B. Blackburne, S. Lindsay, L. Mamanova et al., 2010 Mutation spectrum revealed by breakpoint sequencing of human germline CNVs. Nat. Genet. 42: 385-391.
    • (2010) Nat. Genet , vol.42 , pp. 385-391
    • Conrad, D.F.1    Bird, C.2    Blackburne, B.3    Lindsay, S.4    Mamanova, L.5
  • 64
    • 33847109797 scopus 로고    scopus 로고
    • Use and misuse of the receiver operating characteristic curve in risk prediction
    • Cook, N. R., 2007 Use and misuse of the receiver operating characteristic curve in risk prediction. Circulation 115: 928-935.
    • (2007) Circulation , vol.115 , pp. 928-935
    • Cook, N.R.1
  • 65
    • 39449116116 scopus 로고    scopus 로고
    • High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans
    • Coop, G., X. Wen, C. Ober, J. K. Pritchard, and M. Przeworski, 2008 High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science 319: 1395-1398.
    • (2008) Science , vol.319 , pp. 1395-1398
    • Coop, G.1    Wen, X.2    Ober, C.3    Pritchard, J.K.4    Przeworski, M.5
  • 66
    • 52949093111 scopus 로고    scopus 로고
    • Systematic assessment of copy number variant detection via genome-wide SNP genotyping
    • Cooper, G. M., T. Zerr, J. M. Kidd, E. E. Eichler, and D. A. Nickerson, 2008 Systematic assessment of copy number variant detection via genome-wide SNP genotyping. Nat. Genet. 40: 1199-1203.
    • (2008) Nat. Genet , vol.40 , pp. 1199-1203
    • Cooper, G.M.1    Zerr, T.2    Kidd, J.M.3    Eichler, E.E.4    Nickerson, D.A.5
  • 67
    • 84866127755 scopus 로고    scopus 로고
    • Sequencebased detection and breakpoint assembly of polymorphic inversions
    • Corbett-Detig, R. B., C. Cardeno, and C. H. Langley, 2012 Sequencebased detection and breakpoint assembly of polymorphic inversions. Genetics 192: 131-137.
    • (2012) Genetics , vol.192 , pp. 131-137
    • Corbett-Detig, R.B.1    Cardeno, C.2    Langley, C.H.3
  • 68
    • 77955275027 scopus 로고    scopus 로고
    • Validation of rearrangement break points identified by paired-end sequencing in natural populations of Drosophila melanogaster
    • Cridland, J. M., and K. R. Thornton, 2010 Validation of rearrangement break points identified by paired-end sequencing in natural populations of Drosophila melanogaster. Genome Biol. Evol. 2: 83-101.
    • (2010) Genome Biol. Evol , vol.2 , pp. 83-101
    • Cridland, J.M.1    Thornton, K.R.2
  • 69
    • 0037183880 scopus 로고    scopus 로고
    • A single p450 allele associated with insecticide resistance in Drosophila
    • Daborn, P. J., J. L. Yen, M. R. Bogwitz, G. Le Goff, and E. Feil et al., 2002 A single p450 allele associated with insecticide resistance in Drosophila. Science 297: 2253-2256.
    • (2002) Science , vol.297 , pp. 2253-2256
    • Daborn, P.J.1    Yen, J.L.2    Bogwitz, M.R.3    le Goff, G.4    Feil, E.5
  • 70
    • 3843103748 scopus 로고    scopus 로고
    • Linking phylogenetics with population genetics to reconstruct the geographic origin of a species
    • Dean, M. D., and J. W. O. Ballard, 2004 Linking phylogenetics with population genetics to reconstruct the geographic origin of a species. Mol. Phylogenet. Evol. 32: 998-1009.
    • (2004) Mol. Phylogenet. Evol , vol.32 , pp. 998-1009
    • Dean, M.D.1    Ballard, J.W.O.2
  • 72
    • 36549051577 scopus 로고    scopus 로고
    • Aligning multiple whole genomes with Mercator and MAVID
    • Dewey, C. N., 2007 Aligning multiple whole genomes with Mercator and MAVID. Methods Mol. Biol. 395: 221-236.
    • (2007) Methods Mol. Biol , vol.395 , pp. 221-236
    • Dewey, C.N.1
  • 74
    • 38049150491 scopus 로고    scopus 로고
    • A portrait of copy-number polymorphism in Drosophila melanogaster
    • Dopman, E. B., and D. L. Hartl, 2007 A portrait of copy-number polymorphism in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 104: 19920-19925.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 19920-19925
    • Dopman, E.B.1    Hartl, D.L.2
  • 75
    • 24944485547 scopus 로고    scopus 로고
    • The Jak-STAT signaling pathway is required but not sufficient for the antiviral response of Drosophila
    • Dostert, C., E. Jouanguy, P. Irving, L. Troxler, D. Galiana-Arnoux et al., 2005 The Jak-STAT signaling pathway is required but not sufficient for the antiviral response of Drosophila. Nat. Immunol. 6: 946-953.
    • (2005) Nat. Immunol , vol.6 , pp. 946-953
    • Dostert, C.1    Jouanguy, E.2    Irving, P.3    Troxler, L.4    Galiana-Arnoux, D.5
  • 76
    • 46249105777 scopus 로고    scopus 로고
    • Natural selection shapes genome-wide patterns of copynumber polymorphism in Drosophila melanogaster
    • Emerson, J. J., M. Cardoso-Moreira, J. O. Borevitz, and M. Long, 2008 Natural selection shapes genome-wide patterns of copynumber polymorphism in Drosophila melanogaster. Science 320: 1629-1631.
    • (2008) Science , vol.320 , pp. 1629-1631
    • Emerson, J.J.1    Cardoso-Moreira, M.2    Borevitz, J.O.3    Long, M.4
  • 77
    • 77649215825 scopus 로고    scopus 로고
    • Human and non-human primate genomes share hotspots of positive selection
    • Enard, D., F. Depaulis, and H. Roest Crollius, 2010 Human and non-human primate genomes share hotspots of positive selection. PLoS Genet. 6: e1000840.
    • (2010) PLoS Genet , vol.6
    • Enard, D.1    Depaulis, F.2    Roest, C.H.3
  • 78
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B., and P. Green, 1998 Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 79
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., L. Hillier, M. C. Wendl, and P. Green, 1998 Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 81
    • 0029862606 scopus 로고    scopus 로고
    • Relationship between nucleasehypersensitive sites and meiotic recombination hot spot activity at the HIS4 locus of Saccharomyces cerevisiae
    • Fan, Q. Q., and T. D. Petes, 1996 Relationship between nucleasehypersensitive sites and meiotic recombination hot spot activity at the HIS4 locus of Saccharomyces cerevisiae. Mol. Cell. Biol. 16: 2037-2043.
    • (1996) Mol. Cell. Biol , vol.16 , pp. 2037-2043
    • Fan, Q.Q.1    Petes, T.D.2
  • 82
    • 0034924997 scopus 로고    scopus 로고
    • Positive and negative selection on the human genome
    • Fay, J. C., G. J. Wyckoff, and C.-I. Wu, 2001 Positive and negative selection on the human genome. Genetics 158: 1227-1234.
    • (2001) Genetics , vol.158 , pp. 1227-1234
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.-I.3
  • 83
    • 0023783671 scopus 로고
    • MHC polymorphism pre-dating speciation
    • Figueroa, F., E. Günther, and J. Klein, 1988 MHC polymorphism pre-dating speciation. Nature 335: 265-267.
    • (1988) Nature , vol.335 , pp. 265-267
    • Figueroa, F.1    Günther, E.2    Klein, J.3
  • 84
    • 0001077472 scopus 로고
    • On the dominance ratio
    • Fisher, R. A., 1922 On the dominance ratio. Proc. R. Soc. Edinb. 42: 321-341.
    • (1922) Proc. R. Soc. Edinb , vol.42 , pp. 321-341
    • Fisher, R.A.1
  • 85
    • 77954656491 scopus 로고    scopus 로고
    • Drosophila melanogaster recombination rate calculator
    • Fiston-Lavier, A.-S., N. D. Singh, M. Lipatov, and D. A. Petrov, 2010 Drosophila melanogaster recombination rate calculator. Gene 463: 18-20.
    • (2010) Gene , vol.463 , pp. 18-20
    • Fiston-Lavier, A.-S.1    Singh, N.D.2    Lipatov, M.3    Petrov, D.A.4
  • 86
    • 10144255097 scopus 로고    scopus 로고
    • Selection on X-linked genes during speciation in the Drosophila athabasca complex
    • Ford, M. J., and C. F. Aquadro, 1996 Selection on X-linked genes during speciation in the Drosophila athabasca complex. Genetics 144: 689-703.
    • (1996) Genetics , vol.144 , pp. 689-703
    • Ford, M.J.1    Aquadro, C.F.2
  • 88
    • 0033117745 scopus 로고    scopus 로고
    • The role of population size in molecular evolution
    • Gillespie, J. H., 1999 The role of population size in molecular evolution. Theor. Popul. Biol. 55: 145-156.
    • (1999) Theor. Popul. Biol , vol.55 , pp. 145-156
    • Gillespie, J.H.1
  • 89
    • 33748772261 scopus 로고    scopus 로고
    • Evidence of gene conversion associated with a selective sweep in Drosophila melanogaster
    • Glinka, S., D. De Lorenzo, and W. Stephan, 2006 Evidence of gene conversion associated with a selective sweep in Drosophila melanogaster. Mol. Biol. Evol. 23: 1869-1878.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 1869-1878
    • Glinka, S.1    de Lorenzo, D.2    Stephan, W.3
  • 90
    • 0021592912 scopus 로고
    • The sampling distribution of linkage disequilibrium
    • Golding, G. B., 1984 The sampling distribution of linkage disequilibrium. Genetics 108: 257-274.
    • (1984) Genetics , vol.108 , pp. 257-274
    • Golding, G.B.1
  • 91
    • 25844481290 scopus 로고    scopus 로고
    • Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
    • Haddrill, P. R., B. Charlesworth, D. L. Halligan, and P. Andolfatto, 2005 Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol. 6: R67.
    • (2005) Genome Biol , vol.6
    • Haddrill, P.R.1    Charlesworth, B.2    Halligan, D.L.3    Andolfatto, P.4
  • 92
    • 34447522201 scopus 로고    scopus 로고
    • Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over
    • Haddrill, P. R., D. L. Halligan, D. Tomaras, and B. Charlesworth, 2007 Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over. Genome Biol. 8: R18.
    • (2007) Genome Biol , vol.8
    • Haddrill, P.R.1    Halligan, D.L.2    Tomaras, D.3    Charlesworth, B.4
  • 93
    • 39749133684 scopus 로고    scopus 로고
    • Toward a selection theory of molecular evolution
    • Hahn, M. W., 2008 Toward a selection theory of molecular evolution. Evolution 62: 255-265.
    • (2008) Evolution , vol.62 , pp. 255-265
    • Hahn, M.W.1
  • 94
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 Drosophila genomes
    • Hahn, M. W., M. V. Han, and S.-G. Han, 2007 Gene family evolution across 12 Drosophila genomes. PLoS Genet. 3: e197.
    • (2007) PLoS Genet , vol.3
    • Hahn, M.W.1    Han, M.V.2    Han, S.-G.3
  • 96
    • 46449121800 scopus 로고    scopus 로고
    • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    • Hellmann, I., Y. Mang, Z. Gu, P. Li, F. M. de la Vega et al., 2008 Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. Genome Res. 18: 1020-1029.
    • (2008) Genome Res , vol.18 , pp. 1020-1029
    • Hellmann, I.1    Mang, Y.2    Gu, Z.3    Li, P.4    de la Vega, F.M.5
  • 98
    • 79951829399 scopus 로고    scopus 로고
    • Classic selective sweeps were rare in recent human evolution
    • Hernandez, R. D., J. L. Kelley, E. Elyashiv, S. C. Melton, A. Auton et al., 2011 Classic selective sweeps were rare in recent human evolution. Science 331: 920-924.
    • (2011) Science , vol.331 , pp. 920-924
    • Hernandez, R.D.1    Kelley, J.L.2    Elyashiv, E.3    Melton, S.C.4    Auton, A.5
  • 99
    • 34247507350 scopus 로고    scopus 로고
    • Biochemistry of eukaryotic homologous recombination
    • Heyer, W.-D., 2007 Biochemistry of eukaryotic homologous recombination. Top. Curr. Genet. 17: 95-133.
    • (2007) Top. Curr. Genet , vol.17 , pp. 95-133
    • Heyer, W.-D.1
  • 100
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • Hill, W. G., and A. Robertson, 1966 The effect of linkage on limits to artificial selection. Genet. Res. 8: 269-294.
    • (1966) Genet. Res , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 101
    • 0001935493 scopus 로고
    • Oxford Surveys in Evolutionary Biology, edited by D. Futuyma and J. Antonovics. Oxford University Press, Oxford
    • Hudson, R. R., 1990 Gene genealogies and the coalescent process, pp. 1-44 in Oxford Surveys in Evolutionary Biology, edited by D. Futuyma and J. Antonovics. Oxford University Press, Oxford, pp. 1-44.
    • (1990) Gene Genealogies and The Coalescent Process , pp. 1-44
    • Hudson, R.R.1
  • 102
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • Hudson, R. R., 2001 Two-locus sampling distributions and their application. Genetics 159: 1805-1817.
    • (2001) Genetics , vol.159 , pp. 1805-1817
    • Hudson, R.R.1
  • 103
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson, R. R., 2002 Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 104
    • 0002728140 scopus 로고
    • Non-Neutral Evolution: Theories and Data, edited by G. B. Golding. Chapman & Hall, New York
    • Hudson, R. R., and N. L. Kaplan, 1994 Gene trees with background selection. Non-Neutral Evolution: Theories and Data, edited by G. B. Golding. Chapman & Hall, New York.
    • (1994) Gene Trees With Background Selection
    • Hudson, R.R.1    Kaplan, N.L.2
  • 105
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson, R. R., M. Kreitman, and M. Aguade, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguade, M.3
  • 106
    • 0026512283 scopus 로고
    • A statistical test for detecting geographic subdivision
    • Hudson, R. R., D. D. Boos, and N. L. Kaplan, 1992 A statistical test for detecting geographic subdivision. Mol. Biol. Evol. 9: 138-151.
    • (1992) Mol. Biol. Evol , vol.9 , pp. 138-151
    • Hudson, R.R.1    Boos, D.D.2    Kaplan, N.L.3
  • 107
    • 35048822011 scopus 로고    scopus 로고
    • Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data
    • Hutter, S., H. Li, S. Beisswanger, D. De Lorenzo, and W. Stephan, 2007 Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data. Genetics 177: 469-480.
    • (2007) Genetics , vol.177 , pp. 469-480
    • Hutter, S.1    Li, H.2    Beisswanger, S.3    de Lorenzo, D.4    Stephan, W.5
  • 108
    • 0025599435 scopus 로고
    • Polymorphism at the self-incompatibility locus in Solanaceae predates speciation
    • Ioerger, T. R., A. G. Clark, and T. H. Kao, 1990 Polymorphism at the self-incompatibility locus in Solanaceae predates speciation. Proc. Natl. Acad. Sci. USA 87: 9732-9735.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 9732-9735
    • Ioerger, T.R.1    Clark, A.G.2    Kao, T.H.3
  • 109
    • 72749120260 scopus 로고    scopus 로고
    • Seasonal changes in the long-distance linkage disequilibrium in Drosophila melanogaster
    • Itoh, M., N. Nanba, M. Hasegawa, N. Inomata, R. Kondo et al., 2009 Seasonal changes in the long-distance linkage disequilibrium in Drosophila melanogaster. J. Hered. 101: 26-32.
    • (2009) J. Hered , vol.101 , pp. 26-32
    • Itoh, M.1    Nanba, N.2    Hasegawa, M.3    Inomata, N.4    Kondo, R.5
  • 110
    • 62649088108 scopus 로고    scopus 로고
    • Population analysis of large copy number variants and hotspots of human genetic disease
    • Itsara, A., G. M. Cooper, C. Baker, S. Girirajan, J. Li et al., 2009 Population analysis of large copy number variants and hotspots of human genetic disease. Am. J. Hum. Genet. 84: 148-161.
    • (2009) Am. J. Hum. Genet , vol.84 , pp. 148-161
    • Itsara, A.1    Cooper, G.M.2    Baker, C.3    Girirajan, S.4    Li, J.5
  • 111
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctuate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys, A. J., L. Kauppi, and R. Neumann, 2001 Intensely punctuate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29: 217-222.
    • (2001) Nat. Genet , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 112
    • 0027486933 scopus 로고
    • P-elementinduced interallelic gene conversion of insertions and deletions in Drosophila melanogaster
    • Johnson-Schlitz, D. M., and W. R. Engels, 1993 P-elementinduced interallelic gene conversion of insertions and deletions in Drosophila melanogaster. Mol. Cell. Biol. 13: 7006-7018.
    • (1993) Mol. Cell. Biol , vol.13 , pp. 7006-7018
    • Johnson-Schlitz, D.M.1    Engels, W.R.2
  • 113
    • 37249014088 scopus 로고    scopus 로고
    • Quantitative genomics of locomotor behavior in Drosophila melanogaster
    • Jordan, K., M. Carbone, A. Yamamoto, T. Morgan, and T. Mackay, 2007 Quantitative genomics of locomotor behavior in Drosophila melanogaster. Genome Biol. 8: R172.
    • (2007) Genome Biol , vol.8
    • Jordan, K.1    Carbone, M.2    Yamamoto, A.3    Morgan, T.4    Mackay, T.5
  • 114
    • 0024372736 scopus 로고
    • The "hitchhiking effect" revisited
    • Kaplan, N. L., R. R. Hudson, and C. H. Langley, 1989 The "hitchhiking effect" revisited. Genetics 123: 887-899.
    • (1989) Genetics , vol.123 , pp. 887-899
    • Kaplan, N.L.1    Hudson, R.R.2    Langley, C.H.3
  • 115
    • 0037250168 scopus 로고    scopus 로고
    • The UCSC Genome Browser database
    • Karolchik, D., 2003 The UCSC Genome Browser database. Nucleic Acids Res. 31: 51-54.
    • (2003) Nucleic Acids Res , vol.31 , pp. 51-54
    • Karolchik, D.1
  • 116
    • 0346991744 scopus 로고    scopus 로고
    • A microsatellite variability screen for positive selection associated with the "Out of Africa" habitat expansion of Drosophila melanogaster
    • Kauer, M. O., D. Dieringer, and C. Schlotterer, 2003 A microsatellite variability screen for positive selection associated with the "Out of Africa" habitat expansion of Drosophila melanogaster. Genetics 165: 1137-1148.
    • (2003) Genetics , vol.165 , pp. 1137-1148
    • Kauer, M.O.1    Dieringer, D.2    Schlotterer, C.3
  • 117
    • 67650064592 scopus 로고    scopus 로고
    • Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
    • Keightley, P. D., U. Trivedi, M. Thomson, F. Oliver, S. Kumar et al., 2009 Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res. 19: 1195-1201.
    • (2009) Genome Res , vol.19 , pp. 1195-1201
    • Keightley, P.D.1    Trivedi, U.2    Thomson, M.3    Oliver, F.4    Kumar, S.5
  • 118
    • 77950380215 scopus 로고    scopus 로고
    • Human population differentiation is strongly correlated with local recombination rate
    • Keinan, A., and D. Reich, 2010 Human population differentiation is strongly correlated with local recombination rate. PLoS Genet. 6: e1000886.
    • (2010) PLoS Genet , vol.6
    • Keinan, A.1    Reich, D.2
  • 119
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent, W. J., 2002 BLAT-the BLAST-like alignment tool. Genome Res. 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 120
    • 49849089971 scopus 로고    scopus 로고
    • Recurrent deletion and gene presence/absence polymorphism: Telomere dynamics dominate evolution at the tip of 3L in Drosophila melanogaster and D. simulans
    • Kern, A. D., and D. J. Begun, 2008 Recurrent deletion and gene presence/absence polymorphism: telomere dynamics dominate evolution at the tip of 3L in Drosophila melanogaster and D. simulans. Genetics 179: 1021-1027.
    • (2008) Genetics , vol.179 , pp. 1021-1027
    • Kern, A.D.1    Begun, D.J.2
  • 121
    • 0036961517 scopus 로고    scopus 로고
    • Genomic effects of nucleotide substitutions in Drosophila simulans
    • Kern, A. D., C. D. Jones, and D. J. Begun, 2002 Genomic effects of nucleotide substitutions in Drosophila simulans. Genetics 162: 1753-1761.
    • (2002) Genetics , vol.162 , pp. 1753-1761
    • Kern, A.D.1    Jones, C.D.2    Begun, D.J.3
  • 122
    • 79953060951 scopus 로고    scopus 로고
    • Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
    • Kharchenko, P. V., A. A. Alekseyenko, Y. B. Schwartz, A. Minoda, and N. C. Riddle et al., 2010 Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471: 480-485.
    • (2010) Nature , vol.471 , pp. 480-485
    • Kharchenko, P.V.1    Alekseyenko, A.A.2    Schwartz, Y.B.3    Minoda, A.4    Riddle, N.C.5
  • 123
    • 69249225196 scopus 로고    scopus 로고
    • The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters
    • Klattenhoff, C., H. Xi, C. Li, S. Lee, J. Xu et al., 2009 The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters. Cell 138: 1137-1149.
    • (2009) Cell , vol.138 , pp. 1137-1149
    • Klattenhoff, C.1    Xi, H.2    Li, C.3    Lee, S.4    Xu, J.5
  • 124
    • 40149090856 scopus 로고    scopus 로고
    • Drosophila brca2 is required for mitotic and meiotic DNA repair and efficient activation of the meiotic recombination checkpoint
    • Klovstad, M., U. Abdu, and T. Schüpbach, 2008 Drosophila brca2 is required for mitotic and meiotic DNA repair and efficient activation of the meiotic recombination checkpoint. PLoS Genet. 4: e31.
    • (2008) PLoS Genet , vol.4
    • Klovstad, M.1    Abdu, U.2    Schüpbach, T.3
  • 125
    • 0019771137 scopus 로고
    • Chromosome inversion polymorphisms in Drosophila melanogaster. I. Latitudinal clines and associations between inversions in Australasian populations
    • Knibb, W. R., J. G. Oakeshott, and J. B. Gibson, 1981 Chromosome inversion polymorphisms in Drosophila melanogaster. I. Latitudinal clines and associations between inversions in Australasian populations. Genetics 98: 833-847.
    • (1981) Genetics , vol.98 , pp. 833-847
    • Knibb, W.R.1    Oakeshott, J.G.2    Gibson, J.B.3
  • 126
    • 78751560974 scopus 로고    scopus 로고
    • Recurrent adaptation in RNA interference genes across the Drosophila phylogeny
    • Kolaczkowski, B., D. N. Hupalo, and A. D. Kern, 2011a Recurrent adaptation in RNA interference genes across the Drosophila phylogeny. Mol. Biol. Evol. 28: 1033-1042.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 1033-1042
    • Kolaczkowski, B.1    Hupalo, D.N.2    Kern, A.D.3
  • 127
    • 78951483665 scopus 로고    scopus 로고
    • Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster
    • Kolaczkowski, B., A. D. Kern, A. K. Holloway, and D. J. Begun, 2011b Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster. Genetics 187: 245-260.
    • (2011) Genetics , vol.187 , pp. 245-260
    • Kolaczkowski, B.1    Kern, A.D.2    Holloway, A.K.3    Begun, D.J.4
  • 128
    • 78049354879 scopus 로고    scopus 로고
    • Fine-scale recombination rate differences between sexes, populations and individuals
    • Kong, A., G. Thorleifsson, D. F. Gudbjartsson, G. Masson, A. Sigurdsson et al., 2010 Fine-scale recombination rate differences between sexes, populations and individuals. Nature 467: 1099-1103.
    • (2010) Nature , vol.467 , pp. 1099-1103
    • Kong, A.1    Thorleifsson, G.2    Gudbjartsson, D.F.3    Masson, G.4    Sigurdsson, A.5
  • 129
    • 35348988679 scopus 로고    scopus 로고
    • Paired-end mapping reveals extensive structural variation in the human genome
    • Korbel, J. O., A. E. Urban, J. P. Affourtit, B. Godwin, F. Grubert et al., 2007 Paired-end mapping reveals extensive structural variation in the human genome. Science 318: 420-426.
    • (2007) Science , vol.318 , pp. 420-426
    • Korbel, J.O.1    Urban, A.E.2    Affourtit, J.P.3    Godwin, B.4    Grubert, F.5
  • 130
    • 0020560127 scopus 로고
    • Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster
    • Kreitman, M., 1983 Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304: 412-417.
    • (1983) Nature , vol.304 , pp. 412-417
    • Kreitman, M.1
  • 131
    • 0042968976 scopus 로고    scopus 로고
    • The power of the 39 UTR: Translational control and development
    • Kuersten, S., and E. B. Goodwin, 2003 The power of the 39 UTR: translational control and development. Nat. Rev. Genet. 4: 626-637.
    • (2003) Nat. Rev. Genet , vol.4 , pp. 626-637
    • Kuersten, S.1    Goodwin, E.B.2
  • 132
    • 0000792280 scopus 로고
    • Historical biogeography of the Drosophila melanogaster species subgroup
    • Lachaise, D., M. L. Carious, J. R. David, F. Lemeunier, L. Tsacas et al., 1988 Historical biogeography of the Drosophila melanogaster species subgroup. Evol. Biol. 22: 159-225.
    • (1988) Evol. Biol , vol.22 , pp. 159-225
    • Lachaise, D.1    Carious, M.L.2    David, J.R.3    Lemeunier, F.4    Tsacas, L.5
  • 133
    • 0023988195 scopus 로고
    • Genomic mapping by fingerprinting random clones: A mathematical analysis
    • Lander, E. S., and M. S. Waterman, 1988 Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics 2: 231-239.
    • (1988) Genomics , vol.2 , pp. 231-239
    • Lander, E.S.1    Waterman, M.S.2
  • 134
    • 0016149819 scopus 로고
    • The direction of linkage disequilibrium
    • Langley, C. H., and J. F. Crow, 1974 The direction of linkage disequilibrium. Genetics 78: 937-941.
    • (1974) Genetics , vol.78 , pp. 937-941
    • Langley, C.H.1    Crow, J.F.2
  • 135
    • 0016144327 scopus 로고
    • Linkage disequilibrium in natural populations of Drosophila melanogaster
    • Langley, C. H., Y. N. Tobari, and K.-I. Kojima, 1974 Linkage disequilibrium in natural populations of Drosophila melanogaster. Genetics 78: 921-936.
    • (1974) Genetics , vol.78 , pp. 921-936
    • Langley, C.H.1    Tobari, Y.N.2    Kojima, K.-I.3
  • 136
    • 0017412728 scopus 로고
    • Linkage disequilibrium in natural populations of Drosophila melanogaster. Seasonal variation
    • Langley, C. H., K. Ito, and R. A. Voelker, 1977 Linkage disequilibrium in natural populations of Drosophila melanogaster. Seasonal variation. Genetics 86: 447-454.
    • (1977) Genetics , vol.86 , pp. 447-454
    • Langley, C.H.1    Ito, K.2    Voelker, R.A.3
  • 137
    • 0027450803 scopus 로고
    • Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans
    • Langley, C. H., J. MacDonald, N. Miyashita, and M. Aguadé, 1993 Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans. Proc. Natl. Acad. Sci. USA 90: 1800-1803.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 1800-1803
    • Langley, C.H.1    Macdonald, J.2    Miyashita, N.3    Aguadé, M.4
  • 138
    • 0034530392 scopus 로고    scopus 로고
    • Linkage disequilibria and the site frequency spectra in the su(s) and su(wa) regions of the Drosophila melanogaster X chromosome
    • Langley, C. H., B. P. Lazzaro, W. Phillips, E. Heikkinen, and J. M. Braverman, 2000 Linkage disequilibria and the site frequency spectra in the su(s) and su(wa) regions of the Drosophila melanogaster X chromosome. Genetics 156: 1837-1852.
    • (2000) Genetics , vol.156 , pp. 1837-1852
    • Langley, C.H.1    Lazzaro, B.P.2    Phillips, W.3    Heikkinen, E.4    Braverman, J.M.5
  • 139
    • 84864088733 scopus 로고    scopus 로고
    • Widespread polymorphism in the positions of stop codons in Drosophila melanogaster
    • Lee, Y. C. G., and J. Reinhardt, 2012 Widespread polymorphism in the positions of stop codons in Drosophila melanogaster. Genome Biol. Evol. 4: 533-549.
    • (2012) Genome Biol. Evol , vol.4 , pp. 533-549
    • Lee, Y.C.G.1    Reinhardt, J.2
  • 140
    • 37349109667 scopus 로고    scopus 로고
    • A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders
    • Lee, J. A., C. M. B. Carvalho, and J. R. Lupski, 2007 A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders. Cell 131: 1235-1247.
    • (2007) Cell , vol.131 , pp. 1235-1247
    • Lee, J.A.1    Carvalho, C.M.B.2    Lupski, J.R.3
  • 141
    • 34047268684 scopus 로고    scopus 로고
    • The host defense of Drosophila melanogaster
    • Lemaitre, B., and J. Hoffmann, 2007 The host defense of Drosophila melanogaster. Annu. Rev. Immunol. 25: 697-743.
    • (2007) Annu. Rev. Immunol , vol.25 , pp. 697-743
    • Lemaitre, B.1    Hoffmann, J.2
  • 142
    • 0017071682 scopus 로고
    • Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences
    • Lemeunier, F., and M. Ashburner, 1976 Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences. Proc. R. Soc. Lond. B Biol. Sci. 193: 275-294.
    • (1976) Proc. R. Soc. Lond. B Biol. Sci , vol.193 , pp. 275-294
    • Lemeunier, F.1    Ashburner, M.2
  • 143
    • 52049097576 scopus 로고    scopus 로고
    • Evidence of spatially varying selection acting on four chromatin-remodeling loci in Drosophila melanogaster
    • Levine, M. T., and D. J. Begun, 2008 Evidence of spatially varying selection acting on four chromatin-remodeling loci in Drosophila melanogaster. Genetics 179: 475-485.
    • (2008) Genetics , vol.179 , pp. 475-485
    • Levine, M.T.1    Begun, D.J.2
  • 144
    • 79960914105 scopus 로고    scopus 로고
    • Inference of human population history from individual whole-genome sequences
    • Li, H., and R. Durbin, 2011 Inference of human population history from individual whole-genome sequences. Nature 475: 493-496.
    • (2011) Nature , vol.475 , pp. 493-496
    • Li, H.1    Durbin, R.2
  • 145
    • 33750491918 scopus 로고    scopus 로고
    • Inferring the demographic history and rate of adaptive substitution in Drosophila
    • Li, H., and W. Stephan, 2006 Inferring the demographic history and rate of adaptive substitution in Drosophila. PLoS Genet. 2: e166.
    • (2006) PLoS Genet , vol.2
    • Li, H.1    Stephan, W.2
  • 146
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li, H., J. Ruan, and R. Durbin, 2008 Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18: 1851.
    • (2008) Genome Res , vol.18 , pp. 1851
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 148
    • 33746513094 scopus 로고    scopus 로고
    • Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome
    • Locke, D. P., A. J. Sharp, S. A. McCarroll, S. D. McGrath, T. L. Newman et al., 2006 Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome. Am. J. Hum. Genet. 79: 275-290.
    • (2006) Am. J. Hum. Genet , vol.79 , pp. 275-290
    • Locke, D.P.1    Sharp, A.J.2    McCarroll, S.A.3    McGrath, S.D.4    Newman, T.L.5
  • 149
    • 0031747186 scopus 로고    scopus 로고
    • Two sites in the Delta gene region contribute to naturally occurring variation in bristle number in Drosophila melanogaster
    • Long, A. D., R. F. Lyman, C. H. Langley, and T. F. Mackay, 1998 Two sites in the Delta gene region contribute to naturally occurring variation in bristle number in Drosophila melanogaster. Genetics 149: 999-1017.
    • (1998) Genetics , vol.149 , pp. 999-1017
    • Long, A.D.1    Lyman, R.F.2    Langley, C.H.3    Mackay, T.F.4
  • 150
    • 0036890740 scopus 로고    scopus 로고
    • Functional and phylogenetic analyses of a putative Drosophila melanogaster UDP-glycosyltransferase gene
    • Luque, T., and D. R. O'Reilly, 2002 Functional and phylogenetic analyses of a putative Drosophila melanogaster UDP-glycosyltransferase gene. Insect Biochem. Mol. Biol. 32: 1597-1604.
    • (2002) Insect Biochem. Mol. Biol , vol.32 , pp. 1597-1604
    • Luque, T.1    O'Reilly, D.R.2
  • 151
    • 75649109712 scopus 로고    scopus 로고
    • Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
    • MacAlpine, H. K., R. Gordân, S. K. Powell, A. J. Hartemink, and D. M. MacAlpine, 2010 Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading. Genome Res. 20: 201-211.
    • (2010) Genome Res , vol.20 , pp. 201-211
    • Macalpine, H.K.1    Gordân, R.2    Powell, S.K.3    Hartemink, A.J.4    Macalpine, D.M.5
  • 153
    • 23344450687 scopus 로고    scopus 로고
    • The structure and population genetics of the breakpoints associated with the cosmopolitan chromosomal inversion In(3R) Payne in Drosophila melanogaster
    • Matzkin, L. M., T. J. S. Merritt, C.-T. Zhu, and W. F. Eanes, 2005 The structure and population genetics of the breakpoints associated with the cosmopolitan chromosomal inversion In(3R) Payne in Drosophila melanogaster. Genetics 170: 1143-1152.
    • (2005) Genetics , vol.170 , pp. 1143-1152
    • Matzkin, L.M.1    Merritt, T.J.S.2    Zhu, C.-T.3    Eanes, W.F.4
  • 154
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard Smith, J., and J. Haigh, 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23: 23-35.
    • (1974) Genet. Res , vol.23 , pp. 23-35
    • Maynard, S.J.1    Haigh, J.2
  • 155
    • 50449091647 scopus 로고    scopus 로고
    • Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease
    • McCarroll, S. A., A. Huett, P. Kuballa, S. D. Chilewski, A. Landry et al., 2008 Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease. Nat. Genet. 40: 1107-1112.
    • (2008) Nat. Genet , vol.40 , pp. 1107-1112
    • McCarroll, S.A.1    Huett, A.2    Kuballa, P.3    Chilewski, S.D.4    Landry, A.5
  • 156
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J. H., and M. Kreitman, 1991 Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 157
    • 0032749124 scopus 로고    scopus 로고
    • A population genetic model for the evolution of synonymous codon usage: Patterns and predictions
    • McVean, G. A. T., and B. Charlesworth, 1999 A population genetic model for the evolution of synonymous codon usage: patterns and predictions. Genet. Res. 74: 145-158.
    • (1999) Genet. Res , vol.74 , pp. 145-158
    • McVean, G.A.T.1    Charlesworth, B.2
  • 158
    • 2142773942 scopus 로고    scopus 로고
    • The fine-scale structure of recombination rate variation in the human genome
    • McVean, G. A. T., S. R. Myers, S. Hunt, P. Deloukas, D. R. Bentley et al., 2004 The fine-scale structure of recombination rate variation in the human genome. Science 304: 581-584.
    • (2004) Science , vol.304 , pp. 581-584
    • McVean, G.A.T.1    Myers, S.R.2    Hunt, S.3    Deloukas, P.4    Bentley, D.R.5
  • 159
    • 73649093539 scopus 로고    scopus 로고
    • A complex suite of forces drives gene traffic from Drosophila X chromosomes
    • Meisel, R. P., M. V. Han, and M. W. Hahn, 2009 A complex suite of forces drives gene traffic from Drosophila X chromosomes. Genome Biol. Evol. 1: 176-188.
    • (2009) Genome Biol. Evol , vol.1 , pp. 176-188
    • Meisel, R.P.1    Han, M.V.2    Hahn, M.W.3
  • 160
    • 0017704989 scopus 로고
    • Inversion clines in populations of Drosophila melanogaster
    • Mettler, L. E., R. A. Voelker, and T. Mukai, 1977 Inversion clines in populations of Drosophila melanogaster. Genetics 87: 169-176.
    • (1977) Genetics , vol.87 , pp. 169-176
    • Mettler, L.E.1    Voelker, R.A.2    Mukai, T.3
  • 161
    • 0023732921 scopus 로고
    • Molecular and phenotypic variation of the white locus region in Drosophila melanogaster
    • Miyashita, N., and C. H. Langley, 1988 Molecular and phenotypic variation of the white locus region in Drosophila melanogaster. Genetics 120: 199-212.
    • (1988) Genetics , vol.120 , pp. 199-212
    • Miyashita, N.1    Langley, C.H.2
  • 162
    • 0026322337 scopus 로고
    • Chromosome rearrangement by ectopic recombination in Drosophila melanogaster: Genome structure and evolution
    • Montgomery, E. A., S. M. Huang, C. H. Langley, and B. H. Judd, 1991 Chromosome rearrangement by ectopic recombination in Drosophila melanogaster: genome structure and evolution. Genetics 129: 1085-1098.
    • (1991) Genetics , vol.129 , pp. 1085-1098
    • Montgomery, E.A.1    Huang, S.M.2    Langley, C.H.3    Judd, B.H.4
  • 163
    • 0027153966 scopus 로고
    • Codon usage bias and base composition of nuclear genes in Drosophila
    • Moriyama, E. N., and D. L. Hartl, 1993 Codon usage bias and base composition of nuclear genes in Drosophila. Genetics 134: 847-858.
    • (1993) Genetics , vol.134 , pp. 847-858
    • Moriyama, E.N.1    Hartl, D.L.2
  • 164
    • 0030034357 scopus 로고    scopus 로고
    • Intraspecific nuclear DNA variation in Drosophila
    • Moriyama, E. N., and J. R. Powell, 1996 Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13: 261-277.
    • (1996) Mol. Biol. Evol , vol.13 , pp. 261-277
    • Moriyama, E.N.1    Powell, J.R.2
  • 165
    • 76749155072 scopus 로고    scopus 로고
    • Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination
    • Myers, S., R. Bowden, A. Tumian, R. E. Bontrop, C. Freeman et al., 2010 Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination. Science 327: 876-879.
    • (2010) Science , vol.327 , pp. 876-879
    • Myers, S.1    Bowden, R.2    Tumian, A.3    Bontrop, R.E.4    Freeman, C.5
  • 166
    • 77649236556 scopus 로고    scopus 로고
    • Spatial regulation and organization of DNA replication within the nucleus
    • Natsume, T., and T. U. Tanaka, 2009 Spatial regulation and organization of DNA replication within the nucleus. Chromosome Res. 18: 7-17.
    • (2009) Chromosome Res , vol.18 , pp. 7-17
    • Natsume, T.1    Tanaka, T.U.2
  • 167
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M., and T. Gojobori, 1986 Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426.
    • (1986) Mol. Biol. Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 169
    • 70349739736 scopus 로고    scopus 로고
    • The Integrated Genome Browser: Free software for distribution and exploration of genome-scale datasets
    • Nicol, J. W., G. A. Helt, S. G. Blanchard, A. Raja, and A. E. Loraine, 2009 The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics 25: 2730-2731.
    • (2009) Bioinformatics , vol.25 , pp. 2730-2731
    • Nicol, J.W.1    Helt, G.A.2    Blanchard, S.G.3    Raja, A.4    Loraine, A.E.5
  • 170
    • 33845898825 scopus 로고    scopus 로고
    • Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila
    • Nielsen, R., V. L. Bauer DuMont, M. J. Hubisz, and C. F. Aquadro, 2007 Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila. Mol. Biol. Evol. 24: 228-235.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 228-235
    • Nielsen, R.1    Bauer, M.V.L.2    Hubisz, M.J.3    Aquadro, C.F.4
  • 171
    • 40849127131 scopus 로고    scopus 로고
    • African Drosophila melanogaster and D. simulans populations have similar levels of sequence variability, suggesting comparable effective population sizes
    • Nolte, V., and C. Schlötterer, 2008 African Drosophila melanogaster and D. simulans populations have similar levels of sequence variability, suggesting comparable effective population sizes. Genetics 178: 405-412.
    • (2008) Genetics , vol.178 , pp. 405-412
    • Nolte, V.1    Schlötterer, C.2
  • 172
    • 53749100167 scopus 로고    scopus 로고
    • Contrasting patterns of natural variation in global Drosophila melanogaster populations
    • Nunes, M. D. S., H. Neumeier, and C. Schlötterer, 2008 Contrasting patterns of natural variation in global Drosophila melanogaster populations. Mol. Ecol. 17: 4470-4479.
    • (2008) Mol. Ecol , vol.17 , pp. 4470-4479
    • Nunes, M.D.S.1    Neumeier, H.2    Schlötterer, C.3
  • 173
    • 33644996948 scopus 로고    scopus 로고
    • Natural selection drives extremely rapid evolution in antiviral RNAi genes
    • Obbard, D. J., F. M. Jiggins, D. L. Halligan, and T. J. Little, 2006 Natural selection drives extremely rapid evolution in antiviral RNAi genes. Curr. Biol. 16: 580-585.
    • (2006) Curr. Biol , vol.16 , pp. 580-585
    • Obbard, D.J.1    Jiggins, F.M.2    Halligan, D.L.3    Little, T.J.4
  • 174
    • 0027020232 scopus 로고
    • The nearly neutral theory of molecular evolution
    • Ohta, T., 1992 The nearly neutral theory of molecular evolution. Annu. Rev. Ecol. Syst. 23: 263-286.
    • (1992) Annu. Rev. Ecol. Syst , vol.23 , pp. 263-286
    • Ohta, T.1
  • 175
    • 24744465216 scopus 로고    scopus 로고
    • Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation
    • Ometto, L., S. Glinka, D. De Lorenzo, and W. Stephan, 2005 Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation. Mol. Biol. Evol. 22: 2119-2130.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 2119-2130
    • Ometto, L.1    Glinka, S.2    de Lorenzo, D.3    Stephan, W.4
  • 176
    • 0035109378 scopus 로고    scopus 로고
    • Haldane's sieve and adaptation from the standing genetic variation
    • Orr, H. A., and A. J. Betancourt, 2001 Haldane's sieve and adaptation from the standing genetic variation. Genetics 157: 875-884.
    • (2001) Genetics , vol.157 , pp. 875-884
    • Orr, H.A.1    Betancourt, A.J.2
  • 177
    • 57149099394 scopus 로고    scopus 로고
    • Sequencing of natural strains of Arabidopsis thaliana with short reads
    • Ossowski, S., K. Schneeberger, R. M. Clark, C. Lanz, N. Warthmann et al., 2008 Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res. 18: 2024-2033.
    • (2008) Genome Res , vol.18 , pp. 2024-2033
    • Ossowski, S.1    Schneeberger, K.2    Clark, R.M.3    Lanz, C.4    Warthmann, N.5
  • 178
    • 79952295560 scopus 로고    scopus 로고
    • A hierarchical combination of factors shapes the genomewide topography of yeast meiotic recombination initiation
    • Pan, J., M. Sasaki, R. Kniewel, H. Murakami, H. G. Blitzblau et al., 2011 A hierarchical combination of factors shapes the genomewide topography of yeast meiotic recombination initiation. Cell 144: 719-731.
    • (2011) Cell , vol.144 , pp. 719-731
    • Pan, J.1    Sasaki, M.2    Kniewel, R.3    Murakami, H.4    Blitzblau, H.G.5
  • 179
    • 12344281782 scopus 로고    scopus 로고
    • The implications of structured 59 untranslated regions on translation and disease
    • Pickering, B. M., and A. E. Willis, 2005 The implications of structured 59 untranslated regions on translation and disease. Semin. Cell Dev. Biol. 16: 39-47.
    • (2005) Semin. Cell Dev. Biol , vol.16 , pp. 39-47
    • Pickering, B.M.1    Willis, A.E.2
  • 180
    • 33750464822 scopus 로고    scopus 로고
    • History and structure of sub-Saharan populations of Drosophila melanogaster
    • Pool, J. E., and C. F. Aquadro, 2006 History and structure of sub-Saharan populations of Drosophila melanogaster. Genetics 174: 915-929.
    • (2006) Genetics , vol.174 , pp. 915-929
    • Pool, J.E.1    Aquadro, C.F.2
  • 181
    • 47649083315 scopus 로고    scopus 로고
    • The impact of founder events on chromosomal variability in multiply mating species
    • Pool, J. E., and R. Nielsen, 2008 The impact of founder events on chromosomal variability in multiply mating species. Mol. Biol. Evol. 25: 1728-1736.
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1728-1736
    • Pool, J.E.1    Nielsen, R.2
  • 182
    • 24944577454 scopus 로고    scopus 로고
    • Recombination enhances protein adaptation in Drosophila melanogaster
    • Presgraves, D. C., 2005 Recombination enhances protein adaptation in Drosophila melanogaster. Curr. Biol. 15: 1651-1656.
    • (2005) Curr. Biol , vol.15 , pp. 1651-1656
    • Presgraves, D.C.1
  • 183
    • 33749583346 scopus 로고    scopus 로고
    • Intron length evolution in Drosophila
    • Presgraves, D. C., 2006 Intron length evolution in Drosophila. Mol. Biol. Evol. 23: 2203-2213.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 2203-2213
    • Presgraves, D.C.1
  • 184
    • 33845884309 scopus 로고    scopus 로고
    • Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96
    • Presgraves, D. C., and W. Stephan, 2007 Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96. Mol. Biol. Evol. 24: 306-314.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 306-314
    • Presgraves, D.C.1    Stephan, W.2
  • 185
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R., and I. M. Hall, 2010 BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 186
    • 79951480123 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna
    • R Development Core Team, 2010 R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna.
    • (2010) R: A Language and Environment For Statistical Computing
  • 187
    • 79551575925 scopus 로고    scopus 로고
    • Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
    • Riddle, N. C., A. Minoda, P. V. Kharchenko, A. A. Alekseyenko, Y. B. Schwartz et al., 2011 Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin. Genome Res. 21: 147-163.
    • (2011) Genome Res , vol.21 , pp. 147-163
    • Riddle, N.C.1    Minoda, A.2    Kharchenko, P.V.3    Alekseyenko, A.A.4    Schwartz, Y.B.5
  • 188
    • 31544473725 scopus 로고    scopus 로고
    • The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species
    • Roselius, K., W. Stephan, and T. Städler, 2005 The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species. Genetics 171: 753-763.
    • (2005) Genetics , vol.171 , pp. 753-763
    • Roselius, K.1    Stephan, W.2    Städler, T.3
  • 189
    • 78650331647 scopus 로고    scopus 로고
    • Identification of functional elements and regulatory circuits by Drosophila modENCODE
    • Roy, S., J. Ernst, P. V. Kharchenko, P. Kheradpour, N. Negre et al., 2010 Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330: 1787-1797.
    • (2010) Science , vol.330 , pp. 1787-1797
    • Roy, S.1    Ernst, J.2    Kharchenko, P.V.3    Kheradpour, P.4    Negre, N.5
  • 190
    • 75649094779 scopus 로고    scopus 로고
    • Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster
    • Sackton, T. B., R. J. Kulathinal, C. M. Bergman, A. R. Quinlan, E. B. Dopman et al., 2009 Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster. Genome Biol. Evol. 1: 449-465.
    • (2009) Genome Biol. Evol , vol.1 , pp. 449-465
    • Sackton, T.B.1    Kulathinal, R.J.2    Bergman, C.M.3    Quinlan, A.R.4    Dopman, E.B.5
  • 191
    • 79952263624 scopus 로고    scopus 로고
    • Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans
    • Sattath, S., E. Elyashiv, O. Kolodny, Y. Rinott, and G. Sella, 2011 Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans. PLoS Genet. 7: e1001302.
    • (2011) PLoS Genet , vol.7
    • Sattath, S.1    Elyashiv, E.2    Kolodny, O.3    Rinott, Y.4    Sella, G.5
  • 192
    • 1242274636 scopus 로고    scopus 로고
    • Strong selective sweep associated with a transposon insertion in Drosophila simulans
    • Schlenke, T. A., and D. J. Begun, 2004 Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc. Natl. Acad. Sci. USA 101: 1626-1631.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 1626-1631
    • Schlenke, T.A.1    Begun, D.J.2
  • 195
    • 72649089957 scopus 로고    scopus 로고
    • Lower linkage disequilibrium at CNVs is due to both recurrent mutation and transposing duplications
    • Schrider, D. R., and M. W. Hahn, 2010 Lower linkage disequilibrium at CNVs is due to both recurrent mutation and transposing duplications. Mol. Biol. Evol. 27: 103-111.
    • (2010) Mol. Biol. Evol , vol.27 , pp. 103-111
    • Schrider, D.R.1    Hahn, M.W.2
  • 196
    • 83055168359 scopus 로고    scopus 로고
    • Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster
    • Schrider, D. R., K. Stevens, C. M. Cardeño, C. H. Langley, and M. W. Hahn, 2011 Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster. Genome Res. 21: 2087-2095.
    • (2011) Genome Res , vol.21 , pp. 2087-2095
    • Schrider, D.R.1    Stevens, K.2    Cardeño, C.M.3    Langley, C.H.4    Hahn, M.W.5
  • 197
    • 61849177618 scopus 로고    scopus 로고
    • Chromatin state marks cell-type-and gender-specific replication of the Drosophila genome
    • Schwaiger, M., M. B. Stadler, O. Bell, H. Kohler, E. J. Oakeley et al., 2009 Chromatin state marks cell-type-and gender-specific replication of the Drosophila genome. Genes Dev. 23: 589-601.
    • (2009) Genes Dev , vol.23 , pp. 589-601
    • Schwaiger, M.1    Stadler, M.B.2    Bell, O.3    Kohler, H.4    Oakeley, E.J.5
  • 198
    • 44649200464 scopus 로고    scopus 로고
    • Polycomb complexes and epigenetic states
    • Schwartz, Y. B., and V. Pirrotta, 2008 Polycomb complexes and epigenetic states. Curr. Opin. Cell Biol. 20: 266-273.
    • (2008) Curr. Opin. Cell Biol , vol.20 , pp. 266-273
    • Schwartz, Y.B.1    Pirrotta, V.2
  • 199
    • 8544270088 scopus 로고    scopus 로고
    • Single-locus latitudinal clines and their relationship to temperate adaptation in metabolic genes and derived alleles in Drosophila melanogaster
    • Sezgin, E., D. D. Duvernell, L. M. Matzkin, Y. Duan, C.-T. Zhu et al., 2004 Single-locus latitudinal clines and their relationship to temperate adaptation in metabolic genes and derived alleles in Drosophila melanogaster. Genetics 168: 923-931.
    • (2004) Genetics , vol.168 , pp. 923-931
    • Sezgin, E.1    Duvernell, D.D.2    Matzkin, L.M.3    Duan, Y.4    Zhu, C.-T.5
  • 201
    • 0024591558 scopus 로고
    • On the rate of DNA sequence evolution in Drosophila
    • Sharp, P. M., and W.-H. Li, 1989 On the rate of DNA sequence evolution in Drosophila. J. Mol. Evol. 28: 398-402.
    • (1989) J. Mol. Evol , vol.28 , pp. 398-402
    • Sharp, P.M.1    Li, W.-H.2
  • 202
    • 84855336201 scopus 로고    scopus 로고
    • Developmental control of gene copy number by repression of replication initiation and fork progression
    • Sher, N., G. W. Bell, S. Li, J. Nordman, T. Eng et al., 2011 Developmental control of gene copy number by repression of replication initiation and fork progression. Genome Res. 22: 64-75.
    • (2011) Genome Res , vol.22 , pp. 64-75
    • Sher, N.1    Bell, G.W.2    Li, S.3    Nordman, J.4    Eng, T.5
  • 203
    • 25144452814 scopus 로고    scopus 로고
    • Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome
    • Singh, N. D., J. C. Davis, and D. A. Petrov, 2005 Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome. J. Mol. Evol. 61: 315-324.
    • (2005) J. Mol. Evol , vol.61 , pp. 315-324
    • Singh, N.D.1    Davis, J.C.2    Petrov, D.A.3
  • 204
    • 0037186564 scopus 로고    scopus 로고
    • Adaptive protein evolution in Drosophila
    • Smith, N. G. C., and A. Eyre-Walker, 2002 Adaptive protein evolution in Drosophila. Nature 415: 1022-1024.
    • (2002) Nature , vol.415 , pp. 1022-1024
    • Smith, N.G.C.1    Eyre-Walker, A.2
  • 205
    • 0019792128 scopus 로고
    • The organization and amplification of two chromosomal domains containing Drosophila chorion genes
    • Spradling, A. C., 1981 The organization and amplification of two chromosomal domains containing Drosophila chorion genes. Cell 27: 193-201.
    • (1981) Cell , vol.27 , pp. 193-201
    • Spradling, A.C.1
  • 206
    • 33751081282 scopus 로고    scopus 로고
    • RNA editing in Drosophila melanogaster: New targets and functional consequences
    • Stapleton, M., J. W. Carlson, and S. E. Celniker, 2006 RNA editing in Drosophila melanogaster: new targets and functional consequences. RNA 12: 1922-1932.
    • (2006) RNA , vol.12 , pp. 1922-1932
    • Stapleton, M.1    Carlson, J.W.2    Celniker, S.E.3
  • 207
    • 0024485843 scopus 로고
    • Molecular genetic variation in the centromeric region of the X chromosome in three Drosophila ananassae populations. I. Contrasts between the vermilion and forked loci
    • Stephan, W., and C. H. Langley, 1989 Molecular genetic variation in the centromeric region of the X chromosome in three Drosophila ananassae populations. I. Contrasts between the vermilion and forked loci. Genetics 121: 89-99.
    • (1989) Genetics , vol.121 , pp. 89-99
    • Stephan, W.1    Langley, C.H.2
  • 208
    • 0031760997 scopus 로고    scopus 로고
    • DNA polymorphism in Lycopersicon and crossing-over per physical length
    • Stephan, W., and C. H. Langley, 1998 DNA polymorphism in Lycopersicon and crossing-over per physical length. Genetics 150: 1585-1593.
    • (1998) Genetics , vol.150 , pp. 1585-1593
    • Stephan, W.1    Langley, C.H.2
  • 209
    • 0032510755 scopus 로고    scopus 로고
    • A test of the background selection hypothesis based on nucleotide data from Drosophila ananassae
    • Stephan, W., L. Xing, D. A. Kirby, and J. M. Braverman, 1998 A test of the background selection hypothesis based on nucleotide data from Drosophila ananassae. Proc. Natl. Acad. Sci. USA 95: 5649-5654.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 5649-5654
    • Stephan, W.1    Xing, L.2    Kirby, D.A.3    Braverman, J.M.4
  • 210
    • 33646180401 scopus 로고    scopus 로고
    • The hitchhiking effect on linkage disequilibrium between linked neutral loci
    • Stephan, W., Y. S. Song, and C. H. Langley, 2006 The hitchhiking effect on linkage disequilibrium between linked neutral loci. Genetics 172: 2647-2663.
    • (2006) Genetics , vol.172 , pp. 2647-2663
    • Stephan, W.1    Song, Y.S.2    Langley, C.H.3
  • 212
    • 10844274729 scopus 로고    scopus 로고
    • Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection
    • Swanson, W. J., A. Wong, M. F. Wolfner, and C. F. Aquadro, 2004 Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection. Genetics 168: 1457-1465.
    • (2004) Genetics , vol.168 , pp. 1457-1465
    • Swanson, W.J.1    Wong, A.2    Wolfner, M.F.3    Aquadro, C.F.4
  • 213
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 214
    • 4644342855 scopus 로고    scopus 로고
    • Interlocus nonrandom association of polymorphisms in Drosophila chemoreceptor genes
    • Takano-Shimizu, T., 2004 Interlocus nonrandom association of polymorphisms in Drosophila chemoreceptor genes. Proc. Natl. Acad. Sci. USA 101: 14156-14161.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 14156-14161
    • Takano-Shimizu, T.1
  • 215
    • 35548956468 scopus 로고    scopus 로고
    • Nucleotide variation at the dopa decarboxylase (Ddc) gene in natural populations of Drosophila melanogaster
    • Tatarenkov, A., and F. J. Ayala, 2007 Nucleotide variation at the dopa decarboxylase (Ddc) gene in natural populations of Drosophila melanogaster. J. Genet. 86: 125-137.
    • (2007) J. Genet , vol.86 , pp. 125-137
    • Tatarenkov, A.1    Ayala, F.J.2
  • 216
    • 33644763127 scopus 로고    scopus 로고
    • Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
    • Thornton, K., and P. Andolfatto, 2006 Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
    • (2006) Genetics , vol.172 , pp. 1607-1619
    • Thornton, K.1    Andolfatto, P.2
  • 217
    • 33646948896 scopus 로고    scopus 로고
    • High-resolution recombination patterns in a region of human chromosome 21 measured by sperm typing
    • Tiemann-Boege, I., P. Calabrese, D. M. Cochran, R. Sokol, and N. Arnheim, 2006 High-resolution recombination patterns in a region of human chromosome 21 measured by sperm typing. PLoS Genet. 2: e70.
    • (2006) PLoS Genet , vol.2
    • Tiemann-Boege, I.1    Calabrese, P.2    Cochran, D.M.3    Sokol, R.4    Arnheim, N.5
  • 218
    • 0032553369 scopus 로고    scopus 로고
    • A rapidly evolving homeobox at the site of a hybrid sterility gene
    • Ting, C. T., S. C. Tsaur, M. L. Wu, and C. I. Wu, 1998 A rapidly evolving homeobox at the site of a hybrid sterility gene. Science 282: 1501-1504.
    • (1998) Science , vol.282 , pp. 1501-1504
    • Ting, C.T.1    Tsaur, S.C.2    Wu, M.L.3    Wu, C.I.4
  • 219
    • 0030068317 scopus 로고    scopus 로고
    • Differences in crossover frequency and distribution among three sibling species of Drosophila
    • True, J. R., J. M. Mercer, and C. C. Laurie, 1996 Differences in crossover frequency and distribution among three sibling species of Drosophila. Genetics 142: 507-523.
    • (1996) Genetics , vol.142 , pp. 507-523
    • True, J.R.1    Mercer, J.M.2    Laurie, C.C.3
  • 220
    • 0000713270 scopus 로고
    • Quatre nouvelles especes de la Cote-d'Ivoire du genre Drosophila, groupe melanogaster, et discussion de l'origine du sous-groupe melanogaster (Diptera: Drosophilidae)
    • Tsacas, L., and D. Lachaise, 1974 Quatre nouvelles especes de la Cote-d'Ivoire du genre Drosophila, groupe melanogaster, et discussion de l'origine du sous-groupe melanogaster (Diptera: Drosophilidae). Ann. Univ. Abidjan E. Ecol. 7: 193-211.
    • (1974) Ann. Univ. Abidjan E. Ecol , vol.7 , pp. 193-211
    • Tsacas, L.1    Lachaise, D.2
  • 221
    • 0025876334 scopus 로고    scopus 로고
    • Unequal crossing-over within the B duplication of Drosophila melanogaster: A molecular analysis
    • Tsubota, S. I., 2009 Unequal crossing-over within the B duplication of Drosophila melanogaster: a molecular analysis. Genet. Res. 57: 105.
    • (2009) Genet. Res , vol.57 , pp. 105
    • Tsubota, S.I.1
  • 222
    • 52049084856 scopus 로고    scopus 로고
    • Genomic analysis of adaptive differentiation in Drosophila melanogaster
    • Turner, T. L., M. T. Levine, M. L. Eckert, and D. J. Begun, 2008 Genomic analysis of adaptive differentiation in Drosophila melanogaster. Genetics 179: 455-473.
    • (2008) Genetics , vol.179 , pp. 455-473
    • Turner, T.L.1    Levine, M.T.2    Eckert, M.L.3    Begun, D.J.4
  • 223
    • 33745441569 scopus 로고    scopus 로고
    • Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila
    • Vermaak, D., S. Henikoff, and H. S. Malik, 2005 Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. PLoS Genet. 1: 96-108.
    • (2005) PLoS Genet , vol.1 , pp. 96-108
    • Vermaak, D.1    Henikoff, S.2    Malik, H.S.3
  • 224
    • 1642331206 scopus 로고    scopus 로고
    • Historicity and the population genetics of Drosophila melanogaster and D. simulans
    • Veuille, M., E. Baudry, M. Cobb, N. Derome, and E. Gravot, 2004 Historicity and the population genetics of Drosophila melanogaster and D. simulans. Genetica 120: 61-70.
    • (2004) Genetica , vol.120 , pp. 61-70
    • Veuille, M.1    Baudry, E.2    Cobb, M.3    Derome, N.4    Gravot, E.5
  • 225
    • 33746218184 scopus 로고    scopus 로고
    • Evolution on the X chromosome: Unusual patterns and processes
    • Vicoso, B., and B. Charlesworth, 2006 Evolution on the X chromosome: unusual patterns and processes. Nat. Rev. Genet. 7: 645-653.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 645-653
    • Vicoso, B.1    Charlesworth, B.2
  • 227
    • 80051487168 scopus 로고    scopus 로고
    • Fixation when N and s vary: Classic approaches give elegant new results
    • Wahl, L. M., 2011 Fixation when N and s vary: classic approaches give elegant new results. Genetics 188: 783-785.
    • (2011) Genetics , vol.188 , pp. 783-785
    • Wahl, L.M.1
  • 228
    • 0031018637 scopus 로고    scopus 로고
    • Estimating ancestral population parameters
    • Wakeley, J., and J. Hey, 1997 Estimating ancestral population parameters. Genetics 145: 847-855.
    • (1997) Genetics , vol.145 , pp. 847-855
    • Wakeley, J.1    Hey, J.2
  • 229
    • 0036743513 scopus 로고    scopus 로고
    • Testing models of selection and demography in Drosophila simulans
    • Wall, J. D., P. Andolfatto, and M. Przeworski, 2002 Testing models of selection and demography in Drosophila simulans. Genetics 162: 203-216.
    • (2002) Genetics , vol.162 , pp. 203-216
    • Wall, J.D.1    Andolfatto, P.2    Przeworski, M.3
  • 230
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir, B. S., and C. C. Cockerham, 1984 Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 231
    • 0030798002 scopus 로고    scopus 로고
    • Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene
    • Wellinger, R. E., and F. Thoma, 1997 Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene. EMBO J. 16: 5046-5056.
    • (1997) EMBO J , vol.16 , pp. 5046-5056
    • Wellinger, R.E.1    Thoma, F.2
  • 232
    • 0028255864 scopus 로고
    • Isolation and analysis of the breakpoint sequences of chromosome inversion In(3L)Payne in Drosophila melanogaster
    • Wesley, C. S., and W. F. Eanes, 1994 Isolation and analysis of the breakpoint sequences of chromosome inversion In(3L)Payne in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 91: 3132-3136.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 3132-3136
    • Wesley, C.S.1    Eanes, W.F.2
  • 233
    • 0036185952 scopus 로고    scopus 로고
    • Recombinogenic effects of suppressors of position-effect variegation in Drosophila
    • Westphal, T., and G. Reuter, 2002 Recombinogenic effects of suppressors of position-effect variegation in Drosophila. Genetics 160: 609-621.
    • (2002) Genetics , vol.160 , pp. 609-621
    • Westphal, T.1    Reuter, G.2
  • 234
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright, S., 1949 The genetical structure of populations. Ann. Hum. Genet. 15: 323-354.
    • (1949) Ann. Hum. Genet , vol.15 , pp. 323-354
    • Wright, S.1
  • 235
    • 0028206864 scopus 로고
    • Meiosis-induced double-strand break sites determined by yeast chromatin structure
    • Wu, T. C., and M. Lichten, 1994 Meiosis-induced double-strand break sites determined by yeast chromatin structure. Science 263: 515-518.
    • (1994) Science , vol.263 , pp. 515-518
    • Wu, T.C.1    Lichten, M.2
  • 236
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang, Z., 2007 PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 237
    • 48449104617 scopus 로고    scopus 로고
    • GOEAST: A web-based software toolkit for Gene Ontology enrichment analysis
    • Zheng, Q., and X.-J. Wang, 2008 GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res. 36: W358-W363.
    • (2008) Nucleic Acids Res , vol.36
    • Zheng, Q.1    Wang, X.-J.2
  • 238
    • 0002331493 scopus 로고
    • Molecular disease, evolution and genetic heterogeneity
    • edited by M. Kasha, and B. Pullman. Academic Press, New York
    • Zuckerkandl, E., and L. Pauling, 1962 Molecular disease, evolution and genetic heterogeneity, pp. 189-225 in Horizons in Biochemistry, edited by M. Kasha, and B. Pullman. Academic Press, New York.
    • (1962) Horizons In Biochemistry , pp. 189-225
    • Zuckerkandl, E.1    Pauling, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.