A pseudohitchhiking model of X vs. autosomal diversity

Genetics

Volumn 168, Issue 4, 2004, Pages 2261-2269

  Betancourt, Andrea J ^a   Kim, Yuseob ^a   Orr, H Allen ^a  

^a UNIVERSITY OF ROCHESTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOSOME; EVOLUTIONARY ADAPTATION; GENE MUTATION; GENETIC DRIFT; GENETIC RECOMBINATION; GENETIC VARIABILITY; HETEROZYGOSITY; HUMAN; NONHUMAN; PRIORITY JOURNAL; X CHROMOSOME;

ANIMALS; DROSOPHILA; FEMALE; MALE; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; RECOMBINATION, GENETIC; VARIATION (GENETICS); X CHROMOSOME;

EID: 11244324004     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.104.030999     Document Type: Article

References (49)

1. ANDOLFATTO, P., 2001 Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 18: 279-290.
2. ANDOLFATTO, P., and M. PRZEWORSKI, 2001 Regions of lower crossing over harbor more rare variants in African populations of Drosophila melanogaster. Genetics 158: 657-665.
3. AQUADRO, C. F., D. J. BEGUN and E. C. KINDAHL, 1994 Selection, recombination, and DNA polymorphism in Drosophila, pp. 46-56 in Non-Neutral Evolution: Theories and Molecular Data, edited by B. GOLDING. Chapman & Hall, New York.
4. AVERY, P. J., 1984 The population genetics of haplo-diploids and X-linked genes. Genet. Res. 44: 321-341.
5. BETANCOURT, A. J., D. C. PRESGRAVES and W. J. SWANSON, 2002 A test for faster X evolution in Drosophila. Mol. Biol. Evol. 19: 1816-1819.
6. BARTON, N. H., 1998 The effect of hitch-hiking on neutral genealogies. Genet. Res. 72: 123-133.
7. BEGUN, D. J., and C. F. AQUADRO, 1992 Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
8. BEGUN, D. J., and P. WHITLEY, 2000 Reduced X-linked nucleotide polymorphism in Drosophila simulans. Proc. Natl. Acad. Sci. USA 97: 5960-5965.
9. CHARLESWORTH, B., 1992 Evolutionary rates in partially self-fertilizing species. Am. Nat. 140: 126-148.
10. CHARLESWORTH, B., 1994 The effect of background selection against deleterious mutations on weakly selected, linked variants. Genet. Res. 63: 213-227.
11. CHARLESWORTH, B., 1996 Background selection and patterns of genetic diversity in Drosophila melanogaster. Genet. Res. 68: 131-150.
12. CHARLESWORTH, B., 2001 The effect of life-history and mode of inheritance on neutral genetic variability. Genet. Res. 77: 153-166.
13. CHARLESWORTH, B., J. A. COYNE and N. BARTON, 1987 The relative rates of evolution of sex chromosomes and autosomes. Am. Nat. 130: 113-146.
14. CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
15. CIVETTA, A., and R. S. SINGH, 1995 High divergence of reproductive tract proteins and their association with postzygotic reproductive isolation in Drosophila melanogaster and Drosophila virilis group species. J. Mol. Evol. 41: 1085-1095.
16. COUNTERMAN, B. A., D. ORTIZ-BARRIENTOS and M. A. NOOR, 2004 Using comparative genomic data to test for fast-X evolution. Evol. Int. J. Org. Evol. 58: 656-660.
17. CUTTER, A. D., and B. A. PAYSEUR, 2003 Selection at linked sites in the partial selfer Caenorhabditis elegans. Mol. Biol. Evol. 20: 665-673.
18. FAY, J. C., and C.-I WU, 1999 A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation. Mol. Biol. Evol. 16: 1003-1005.
19. GILLESPIE, J. H., 1991 The Causes of Molecular Evolution. Oxford University Press, Oxford.
20. GILLESPIE, J. H., 2000 Genetic drift in an infinite population: the pseudohitchhiking model. Genetics 155: 909-919.
21. HALDANE, J. B. S., 1927 A mathematical theory of natural and artificial selection, part V: selection and mutation. Proc. Camb. Philos. Soc. 28: 838-844.
22. HELLMANN, I., I. EBERSBERGER, S. E. PTAK, S. PAABO and M. PRZEWORSKI, 2003 A neutral explanation for the correlation of diversity with recombination rates in humans. Am. J. Hum. Genet. 72: 1527-1535.
23. HILL, W. G., and A. ROBERTSON, 1966 The effect of linkage on the limits to artificial selection. Genet. Res. 8: 269-294.
24. INNAN, H., and W. STEPHAN, 2003 Distinguishing the hitchhiking and background selection models. Genetics 165: 2307-2312.
25. IRVIN, S. D., K. A. WETTERSTRAND, C. M. HUTTER and C. F. AQUADRO, 1998 Genetic variation and differentiation at microsatellite loci in Drosophila simulans: evidence for founder effects in new world populations. Genetics 150: 777-790.
26. KAUER, M., B. ZANGERL, D. DIERINGER and C. SCHLOTTERER, 2002 Chromosomal patterns of microsatellite variability contrast sharply in African and non-African populations of Drosophila melanogaster. Genetics 160: 247-256.
27. KONG, A., D. F. GUDBJARTSSON, J. SAINZ, G. M. JONSDOTTIR, S. A. GUDJONSSON et al., 2002 A high-resolution recombination map of the human genome. Nat. Genet. 31: 241-247.
28. MAYNARD SMITH, J., 1971 What use is sex? J. Theor. Biol. 30: 319-335.
29. MAYNARD SMITH, J., and J. HAIGH, 1974 The hitch-hiking effect of a favorable gene. Genet. Res. 23: 23-35.
30. MCVEAN, G. A., S. R. MYERS, S. HUNT, P. DELOUKAS, D. R. BENTLEY et al., 2004 The fine-scale structure of recombination rate variation in the human genome. Science 304: 581-584.
31. MIYATA, T., H. HAYASHIDA, K. KUMA, K. MITSUYASU and T. YASUNAGA, 1987 Male-driven molecular evolution: a model and nucleotide sequence analysis. Cold Spring Harbor Symp. Quant. Biol. 52: 863-867.
32. MOUSSET, S., and N. DEROME, 2004 Molecular polymorphism in Drosophila Melanogaster and D. simulans: What have we learned from recent studies? Genetica 120: 79-86.
33. NACHMAN, M., 1997 Patterns of DNA variability at X-linked loci in Mus domesticus. Genetics 147: 1303-1316.
34. NACHMAN, M. W., V. L. BAUER, S. L. CROWELL and C. F. AQUADRO, 1998 DNA variability and recombination rates at X-linked loci in humans. Genetics 150: 1133-1141.
35. NOOR, M. A., A. L. CUNNINGHAM and J. C. LARKIN, 2001 Consequences of recombination rate variation on quantitative trait locus mapping studies: simulations based on the Drosophila melanogaster genome. Genetics 159: 581-588.
36. ORR, H. A., and A. J. BETANCOURT, 2001 Haldane's sieve and adaptation from the standing genetic variation. Genetics 157: 875-884.
37. PARISI, M., R. NUTTALL, D. NAIMAN, G. BOUFFARD, J. MALLEY et al., 2003 Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 299: 697-700.
38. PAYSEUR, B. A., and M. W. NACHMAN, 2002 Natural selection at linked sites in humans. Gene 300: 31-42.
39. SACHIDANANDAM, R., D. WEISSMAN, S. C. SCHMIDT, J. M. KAKOL, L. D. STEIN et al., 2001 A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
40. SHELDAHL, L. A., D. M. WEINREICH and D. M. RAND, 2003 Recombination, dominance and selection on amino acid polymorphism in the Drosophila genome: contrasting patterns on the X and fourth chromosomes. Genetics 165: 1195-1208.
41. STEPHAN, W., and C. H. LANGLEY, 1998 DNA polymorphism in Lycopersicon and crossing-over per physical length. Genetics 150:1585-1593.
42. STEPHAN, W., T. H. E. WIEHE and M. W. LENZ, 1992 The effect of strongly selected substitutions on neutral polymorphism: analytical results based on diffusion theory. Theor. Popul. Biol. 41: 237-254.
43. STEPHAN, W., L. XING, D. A. KIRBY and J. M. BRAVERMAN, 1998 A test of the background selection hypothesis based on nucleotide data from Drosophila ananassae. Proc. Natl. Acad. Sci. USA 95: 5649-5654.
44. SWANSON, W. J., A. G. CLARK, H. M. WALDRIP-DAIL, M. F. WOLFNER and C. F. AQUADRO, 2001 Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila. Proc. Natl. Acad. Sci. USA 98: 7375-7379.
45. THORNTON, K., and M. LONG, 2002 Rapid divergence of gene duplicates on the Drosophila melanogaster X chromosome. Mol. Biol. Evol. 19: 918-925.
46. TRUE, J. R., J. M. MERCER and C. C. LAURIE, 1996 Differences in crossover frequency and distribution among three sibling species of Drosophila. Genetics 142: 507-523.
47. WALL, J. D., P. ANDOLFATTO and M. PRZEWORSKI, 2002 Testing models of selection and demography in Drosophila simulans. Genetics 162: 203-216.
48. WOLFRAM RESEARCH, 2003 Mathematica. Wolfram Research, Champaign, IL.
49. ZEYL, C., T. VANDERFORD and M. CARTER, 2003 An evolutionary advantage of haploidy in large yeast populations. Science 299: 555-558.