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Volumn 28, Issue 2, 2011, Pages 1033-1042

Recurrent adaptation in RNA interference genes across the drosophila phylogeny

Author keywords

adaptation; Drosophlia; positive selection; RNA interference; RNAi

Indexed keywords

ARTICLE; CLINICAL EVALUATION; DROSOPHILA MELANOGASTER; EVOLUTIONARY ADAPTATION; FUNCTIONAL GENOMICS; INSECT GENETICS; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; PHYLOGENY; PROTEIN RNA BINDING; RNA INTERFERENCE; SELECTIVE SWEEP;

EID: 78751560974     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msq284     Document Type: Article
Times cited : (65)

References (73)
  • 1
    • 53349121971 scopus 로고    scopus 로고
    • Mechanism of induction and suppression of antiviral immunity directed by virus-derived small RNAs in Drosophila
    • Aliyari R, Wu Q, Li HW, Wang XH, Li F, Green LD, Han CS, Li WX, Ding SW. 2008. Mechanism of induction and suppression of antiviral immunity directed by virus-derived small RNAs in Drosophila. Cell Host Microbe. 4:387-397.
    • (2008) Cell Host Microbe , vol.4 , pp. 387-397
    • Aliyari, R.1    Wu, Q.2    Li, H.W.3    Wang, X.H.4    Li, F.5    Green, L.D.6    Han, C.S.7    Li, W.X.8    Ding, S.W.9
  • 2
    • 59949104526 scopus 로고    scopus 로고
    • Network-level molecular evolutionary analysis of the insulin/ TOR signal transduction pathway across 12 Drosophila genomes
    • Alvarez-Ponce D, Aguadé M, Rozas J. 2009. Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes. Genome Res. 19:234-242.
    • (2009) Genome Res , vol.19 , pp. 234-242
    • Alvarez-Ponce, D.1    Aguadé, M.2    Rozas, J.3
  • 4
    • 0034967711 scopus 로고    scopus 로고
    • Regions of lower crossing over harbor more rare variants in African populations of Drosophila melanogaster
    • Andolfatto P, Przeworski M. 2001. Regions of lower crossing over harbor more rare variants in African populations of Drosophila melanogaster. Genetics 158:657-665.
    • (2001) Genetics , vol.158 , pp. 657-665
    • Andolfatto, P.1    Przeworski, M.2
  • 5
    • 34547793042 scopus 로고    scopus 로고
    • Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
    • Anisimova M, Yang Z. 2007. Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites. Mol Biol Evol. 24:1219-1228.
    • (2007) Mol Biol Evol , vol.24 , pp. 1219-1228
    • Anisimova, M.1    Yang, Z.2
  • 7
    • 67649238715 scopus 로고    scopus 로고
    • Viral suppressors of RNA silencing hinder exogenous and endogenous small RNA pathways in Drosophila
    • Berry B, Deddouche S, Kirschner D, Imler JL, Antoniewski C. 2009. Viral suppressors of RNA silencing hinder exogenous and endogenous small RNA pathways in Drosophila. PLoS One. 4(6):e5866.
    • (2009) PLoS One , vol.4 , Issue.6
    • Berry, B.1    Deddouche, S.2    Kirschner, D.3    Imler, J.L.4    Antoniewski, C.5
  • 9
    • 0034700086 scopus 로고    scopus 로고
    • Crystal structure of yeast initiation factor 4a, a dead-box RNA helicase
    • Caruthers JM, Johnson ER, McKay DB. 2000. Crystal structure of yeast initiation factor 4a, a dead-box RNA helicase. Proc Natl Acad Sci USA. 97:13080-13085.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 13080-13085
    • Caruthers, J.M.1    Johnson, E.R.2    McKay, D.B.3
  • 10
    • 58749109021 scopus 로고    scopus 로고
    • Identifying protein domains with the Pfam database
    • Chapter 2
    • Coggill P, Finn RD, Bateman A. 2008. Identifying protein domains with the Pfam database. Curr Protoc Bioinformatics. Chapter 2, 23:2.5.1- 2.5.17.
    • (2008) Curr Protoc Bioinformatics , vol.23 , pp. 251-2517
    • Coggill, P.1    Finn, R.D.2    Bateman, A.3
  • 12
    • 23044470630 scopus 로고    scopus 로고
    • Drosophila argonaute-2 is required early in embryogenesis for the assembly of centric/ centromeric heterochromatin, nuclear division, nuclear migration, and germ-cell formation
    • Deshpande G, Calhoun, G, Schedl P. 2005. Drosophila argonaute-2 is required early in embryogenesis for the assembly of centric/ centromeric heterochromatin, nuclear division, nuclear migration, and germ-cell formation. Genes Dev. 19:1680-1685.
    • (2005) Genes Dev , vol.19 , pp. 1680-1685
    • Deshpande, G.1    Calhoun, G.2    Schedl, P.3
  • 13
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Drosophila 12 Genomes Consortium (404 co-authors)
    • Drosophila 12 Genomes Consortium, Clark AG, Eisen MB, et al. (404 co-authors). 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450. 203-218.
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1    Eisen, M.B.2
  • 14
    • 40649086065 scopus 로고    scopus 로고
    • Structural and biochemical insights into the dicing mechanism of mouse dicer: A conserved lysine is critical for dsRNA cleavage
    • Du Z, Lee JK, Tjhen R, Stroud RM, James TL. 2008. Structural and biochemical insights into the dicing mechanism of mouse dicer: a conserved lysine is critical for dsRNA cleavage. Proc Natl Acad Sci USA. 105:2391-2396.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 2391-2396
    • Du, Z.1    Lee, J.K.2    Tjhen, R.3    Stroud, R.M.4    James, T.L.5
  • 15
    • 55549141879 scopus 로고    scopus 로고
    • How well can the accuracy of comparative protein structure models be predicted?
    • Eramian D, Eswar N, Shen MY, Sali A. 2008. How well can the accuracy of comparative protein structure models be predicted? Protein Sci. 17:1881-1893.
    • (2008) Protein Sci , vol.17 , pp. 1881-1893
    • Eramian, D.1    Eswar, N.2    Shen, M.Y.3    Sali, A.4
  • 18
    • 75549090603 scopus 로고    scopus 로고
    • The Pfam protein families database
    • (14 co-authors)
    • Finn RD, Mistry J, Tate J, et al. (14 co-authors). 2010. The Pfam protein families database. Nucleic Acids Res. 38:211-222.
    • (2010) Nucleic Acids Res , vol.38 , pp. 211-222
    • Finn, R.D.1    Mistry, J.2    Tate, J.3
  • 19
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in caenorhabditis elegans
    • DOI 10.1038/35888
    • Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806-811. (Pubitemid 28099681)
    • (1998) Nature , vol.391 , Issue.6669 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 20
    • 65249175123 scopus 로고    scopus 로고
    • Dicing of viral replication intermediates during silencing of latent Drosophila viruses
    • Flynt A, Liu N, Martin R, Lai EC. 2009. Dicing of viral replication intermediates during silencing of latent Drosophila viruses. Proc Natl Acad Sci USA. 106:5270-5275.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 5270-5275
    • Flynt, A.1    Liu, N.2    Martin, R.3    Lai, E.C.4
  • 21
    • 33744494279 scopus 로고    scopus 로고
    • Essential function in vivo for dicer-2 in host defense against RNA viruses in Drosophila
    • Galiana-Arnoux D, Dostert C, Schneemann A, Hoffmann JA, Imler JL. 2006. Essential function in vivo for dicer-2 in host defense against RNA viruses in Drosophila. Nat Immunol. 7:590-597.
    • (2006) Nat Immunol , vol.7 , pp. 590-597
    • Galiana-Arnoux, D.1    Dostert, C.2    Schneemann, A.3    Hoffmann, J.A.4    Imler, J.L.5
  • 22
    • 31044448524 scopus 로고    scopus 로고
    • Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III
    • Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X. 2006. Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III. Cell 124:355-366.
    • (2006) Cell , vol.124 , pp. 355-366
    • Gan, J.1    Tropea, J.E.2    Austin, B.P.3    Court, D.L.4    Waugh, D.S.5    Ji, X.6
  • 23
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 22:160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 25
    • 77649269768 scopus 로고    scopus 로고
    • Structural basis for the function of DEAH helicases
    • He Y, Andersen GR, Nielsen KH. 2010. Structural basis for the function of DEAH helicases. EMBO Rep. 11:180-186.
    • (2010) EMBO Rep , vol.11 , pp. 180-186
    • He, Y.1    Andersen, G.R.2    Nielsen, K.H.3
  • 26
    • 33644874573 scopus 로고    scopus 로고
    • The UCSC genome browser database: Update 2006
    • (27 co-authors)
    • Hinrichs AS, Karolchik D, Baertsch R, et al. (27 co-authors). 2006. The UCSC genome browser database: update 2006. Nucleic Acids Res. 34:D590-D598.
    • (2006) Nucleic Acids Res , vol.34
    • Hinrichs, A.S.1    Karolchik, D.2    Baertsch, R.3
  • 27
    • 34447291602 scopus 로고    scopus 로고
    • The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC
    • Horwich DM, Li C, Matranga C, Vagin V, Farley G, Wang P, Zamore PD. 2007. The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC. Curr Biol. 17:1265-1272.
    • (2007) Curr Biol , vol.17 , pp. 1265-1272
    • Horwich, D.M.1    Li, C.2    Matranga, C.3    Vagin, V.4    Farley, G.5    Wang, P.6    Zamore, P.D.7
  • 28
    • 0029008560 scopus 로고
    • Lethal double-stranded RNA processing activity of ribonuclease III in the absence of suhB protein of Es-cherichia coli
    • Inada T, Nakamura Y. 1995. Lethal double-stranded RNA processing activity of ribonuclease III in the absence of suhB protein of Es-cherichia coli. Biochimie 77:294-302.
    • (1995) Biochimie , vol.77 , pp. 294-302
    • Inada, T.1    Nakamura, Y.2
  • 29
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform. 9:286-298.
    • (2008) Brief Bioinform , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 30
    • 77953731121 scopus 로고    scopus 로고
    • A population genetic hidden Markov model for detecting genomic regions under selection
    • Kern AD, Haussler D. 2010. A population genetic hidden Markov model for detecting genomic regions under selection. Mol Biol Evol. 27:1673-1685.
    • (2010) Mol Biol Evol , vol.27 , pp. 1673-1685
    • Kern, A.D.1    Haussler, D.2
  • 31
    • 0036189827 scopus 로고    scopus 로고
    • Detecting a local signature of genetic hitchhiking along a recombining chromosome
    • Kim Y, Stephan W. 2002. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 160: 765-777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 32
    • 0036544755 scopus 로고    scopus 로고
    • Micro RNAs are complementary to 3'UTR sequence motifs that mediate negative post-transcriptional regulation
    • Lai EC. 2002. Micro RNAs are complementary to 3'UTR sequence motifs that mediate negative post-transcriptional regulation. Nat Genet. 30:363-364.
    • (2002) Nat Genet , vol.30 , pp. 363-364
    • Lai, E.C.1
  • 33
    • 0037123630 scopus 로고    scopus 로고
    • Induction and suppression of RNA silencing by an animal virus
    • Li H, Li WX, Ding SW. 2002. Induction and suppression of RNA silencing by an animal virus. Science 296:1319-1321.
    • (2002) Science , vol.296 , pp. 1319-1321
    • Li, H.1    Li, W.X.2    Ding, S.W.3
  • 34
    • 68549128834 scopus 로고    scopus 로고
    • PiRNAs mediate posttranscriptional retroelement silencing and localization to pi-bodies in the Drosophila germline
    • Lim AK, Tao L, Kai T. 2009. piRNAs mediate posttranscriptional retroelement silencing and localization to pi-bodies in the Drosophila germline. J Cell Biol. 186:333-342.
    • (2009) J Cell Biol , vol.186 , pp. 333-342
    • Lim, A.K.1    Tao, L.2    Kai, T.3
  • 35
    • 0345359925 scopus 로고    scopus 로고
    • Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain
    • Lingel A, Simon B, Izaurralde E, Sattler M. 2003. Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature 426:465-469.
    • (2003) Nature , vol.426 , pp. 465-469
    • Lingel, A.1    Simon, B.2    Izaurralde, E.3    Sattler, M.4
  • 36
    • 0141868916 scopus 로고    scopus 로고
    • R2d2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway
    • Liu Q, Rand TA, Kalidas S, Du F, Kim HE, Smith DP, Wang X. 2003. R2d2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science 301:1921-1925.
    • (2003) Science , vol.301 , pp. 1921-1925
    • Liu, Q.1    Rand, T.A.2    Kalidas, S.3    Du, F.4    Kim, H.E.5    Smith, D.P.6    Wang, X.7
  • 37
    • 75649145014 scopus 로고    scopus 로고
    • Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
    • Lu J, Clark AG. 2010. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Res. 20: 212-227.
    • (2010) Genome Res , vol.20 , pp. 212-227
    • Lu, J.1    Clark, A.G.2
  • 39
    • 34548489183 scopus 로고    scopus 로고
    • Small silencing RNAs
    • Matranga C, Zamore PD. 2007. Small silencing RNAs. Curr Biol. 17: 789-793.
    • (2007) Curr Biol , vol.17 , pp. 789-793
    • Matranga, C.1    Zamore, P.D.2
  • 40
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, Kreitman M. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 41
    • 38849135019 scopus 로고    scopus 로고
    • Choosing Blast options for better detection of orthologs as reciprocal best hits
    • Moreno-Hagelsieb G, Latimer K. 2008. Choosing Blast options for better detection of orthologs as reciprocal best hits. Bioinformatics 24:319-324.
    • (2008) Bioinformatics , vol.24 , pp. 319-324
    • Moreno-Hagelsieb, G.1    Latimer, K.2
  • 42
    • 61349112079 scopus 로고    scopus 로고
    • From fitness landscapes to seascapes: Non-equilibrium dynamics of selection and adaptation
    • Mustonen V, Lassig M. 2009. From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation. Trends Genet. 25:111-119.
    • (2009) Trends Genet , vol.25 , pp. 111-119
    • Mustonen, V.1    Lassig, M.2
  • 45
    • 73449137909 scopus 로고    scopus 로고
    • Quantifying adaptive evolution in the Drosophila immune system
    • Obbard DJ, Welch JJ, Kim KW, Jiggins FM. 2009. Quantifying adaptive evolution in the Drosophila immune system. PLoS Genet. 5(10):e1000698.
    • (2009) PLoS Genet , vol.5 , Issue.10
    • Obbard, D.J.1    Welch, J.J.2    Kim, K.W.3    Jiggins, F.M.4
  • 46
    • 34249309547 scopus 로고    scopus 로고
    • Zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germline
    • Pane A, Wehr K, Schüpbach T. 2007. Zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germline. Dev Cell 12:851-862.
    • (2007) Dev Cell , vol.12 , pp. 851-862
    • Pane, A.1    Wehr, K.2    Schüpbach, T.3
  • 47
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic model averaging
    • Posada D. 2008. jModelTest: phylogenetic model averaging. Mol Biol Evol. 25:1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 48
    • 65349169643 scopus 로고    scopus 로고
    • The correlation of evolutionary rate with pathway position in plant terpenoid biosynthesis
    • Ramsay H, Rieseberg LH, Ritland K. 2009. The correlation of evolutionary rate with pathway position in plant terpenoid biosynthesis. Mol Biol Evol. 26:1045-1053.
    • (2009) Mol Biol Evol , vol.26 , pp. 1045-1053
    • Ramsay, H.1    Rieseberg, L.H.2    Ritland, K.3
  • 49
    • 0032999582 scopus 로고    scopus 로고
    • Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway
    • Rausher MD, Miller RE, Tiffin P. 1999. Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway. Mol Biol Evol. 16:266-274.
    • (1999) Mol Biol Evol , vol.16 , pp. 266-274
    • Rausher, M.D.1    Miller, R.E.2    Tiffin, P.3
  • 50
    • 77958514257 scopus 로고    scopus 로고
    • Positive selection differs between protein secondary structure elements in Drosophila
    • Ridout K, Dixon C, Filatov D. 2010. Positive selection differs between protein secondary structure elements in Drosophila. Genome Biol Evol. 2:166-179.
    • (2010) Genome Biol Evol , vol.2 , pp. 166-179
    • Ridout, K.1    Dixon, C.2    Filatov, D.3
  • 51
    • 22744454230 scopus 로고    scopus 로고
    • Processing of pre-micrornas by the dicer-1-loquacious complex in Drosophila cells
    • Saito K, Ishizuka A, Siomi H, Siomi MC. 2005. Processing of pre-micrornas by the dicer-1-loquacious complex in Drosophila cells. PLoS Biol. 3(7):e235.
    • (2005) PLoS Biol , vol.3 , Issue.7
    • Saito, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 53
    • 15544387147 scopus 로고    scopus 로고
    • Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster
    • Singh ND, Arndt PF, Petrov DA. 2005. Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster. Genetics 169:709-722.
    • (2005) Genetics , vol.169 , pp. 709-722
    • Singh, N.D.1    Arndt, P.F.2    Petrov, D.A.3
  • 54
    • 58749096360 scopus 로고    scopus 로고
    • On the road to reading the RNA-interference code
    • Siomi H, Siomi MC. 2009. On the road to reading the RNA-interference code. Nature 457:396-404.
    • (2009) Nature , vol.457 , pp. 396-404
    • Siomi, H.1    Siomi, M.C.2
  • 55
    • 0037186564 scopus 로고    scopus 로고
    • Adaptive protein evolution in Drosophila
    • Smith NG, Eyre-Walker A. 2002. Adaptive protein evolution in Drosophila. Nature 415:1022-1024.
    • (2002) Nature , vol.415 , pp. 1022-1024
    • Smith, N.G.1    Eyre-Walker, A.2
  • 57
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey J. 2002. A direct approach to false discovery rates. J R Stat Soc Ser B Stat Methodol. 64:479-498.
    • (2002) J R Stat Soc ser B Stat Methodol , vol.64 , pp. 479-498
    • Storey, J.1
  • 58
    • 33644763127 scopus 로고    scopus 로고
    • Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
    • Thornton K, Andolfatto P. 2006. Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172:1607-1619.
    • (2006) Genetics , vol.172 , pp. 1607-1619
    • Thornton, K.1    Andolfatto, P.2
  • 59
    • 41949090434 scopus 로고    scopus 로고
    • The genome of the model beetle and pest Tribolium castaneum
    • Tribolium Genome Sequencing Consortium (240 co-authors)
    • Tribolium Genome Sequencing Consortium, Richards S, Gibbs RA, et al. (240 co-authors). 2008. The genome of the model beetle and pest Tribolium castaneum. Nature 452:949-955.
    • (2008) Nature , vol.452 , pp. 949-955
    • Richards, S.1    Gibbs, R.A.2
  • 60
    • 58149199579 scopus 로고    scopus 로고
    • Flybase: Enhancing Drosophila gene ontology annotations
    • (12 co-authors)
    • Tweedie S, Ashburner M, Falls K, et al. (12 co-authors). 2009. Flybase: enhancing Drosophila gene ontology annotations. Nucleic Acids Res. 37:555-559.
    • (2009) Nucleic Acids Res , vol.37 , pp. 555-559
    • Tweedie, S.1    Ashburner, M.2    Falls, K.3
  • 61
    • 33746502166 scopus 로고    scopus 로고
    • A distinct small RNA pathway silences selfish genetic elements in the germline
    • Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD. 2006. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313:320-324.
    • (2006) Science , vol.313 , pp. 320-324
    • Vagin, V.V.1    Sigova, A.2    Li, C.3    Seitz, H.4    Gvozdev, V.5    Zamore, P.D.6
  • 62
    • 33751120715 scopus 로고    scopus 로고
    • The RNA silencing endonuclease argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster
    • Van Rij RP, Saleh MC, Berry B, Foo C, Houk A, Antoniewski C, Andino R. 2006. The RNA silencing endonuclease argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster. Genes Dev. 20:2985-2995.
    • (2006) Genes Dev , vol.20 , pp. 2985-2995
    • Van Rij, R.P.1    Saleh, M.C.2    Berry, B.3    Foo, C.4    Houk, A.5    Antoniewski, C.6    Andino, R.7
  • 64
    • 14344252157 scopus 로고    scopus 로고
    • Induction and suppression of RNA silencing: Insights from viral infections
    • Voinnet O. 2005. Induction and suppression of RNA silencing: insights from viral infections. Nat Rev Genet. 6:206-220.
    • (2005) Nat Rev Genet , vol.6 , pp. 206-220
    • Voinnet, O.1
  • 66
    • 0642345790 scopus 로고    scopus 로고
    • Structure and conserved RNA binding of the PAZ domain
    • Yan KS, Yan S, Farooq A, Han A, Zeng L, Zhou MM. 2003. Structure and conserved RNA binding of the PAZ domain. Nature 426: 468-474.
    • (2003) Nature , vol.426 , pp. 468-474
    • Yan, K.S.1    Yan, S.2    Farooq, A.3    Han, A.4    Zeng, L.5    Zhou, M.M.6
  • 67
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phyloge-netic analyses
    • Yang Z. 1996. Among-site rate variation and its impact on phyloge-netic analyses. Trends Ecol Evol. 11:367-372.
    • (1996) Trends Ecol Evol , vol.11 , pp. 367-372
    • Yang, Z.1
  • 68
    • 34547803197 scopus 로고    scopus 로고
    • Paml 4: Phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. Paml 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 69
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • Yang Z, Kumar S, Nei M. 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-1650.
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3
  • 70
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WS, Nielsen R. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22: 1107-1118.
    • (2005) Mol Biol Evol , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 71
    • 3142613181 scopus 로고    scopus 로고
    • Single processing center models for human dicer and bacterial RNAse III
    • Zhang H, Kolb FA, Jaskiewicz L, Westhof E, Filipowicz W. 2004. Single processing center models for human dicer and bacterial RNAse III. Cell 118:57-68.
    • (2004) Cell , vol.118 , pp. 57-68
    • Zhang, H.1    Kolb, F.A.2    Jaskiewicz, L.3    Westhof, E.4    Filipowicz, W.5
  • 72
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479.
    • (2005) Mol Biol Evol , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 73
    • 55949117057 scopus 로고    scopus 로고
    • Comparative analysis of argonaute-dependent small RNA pathways in Drosophila
    • Zhou R, Hotta I, Denli AM, Hong P, Perrimon N, Hannon GJ. 2008. Comparative analysis of argonaute-dependent small RNA pathways in Drosophila. Mol Cell 32:592-599.
    • (2008) Mol Cell , vol.32 , pp. 592-599
    • Zhou, R.1    Hotta, I.2    Denli, A.M.3    Hong, P.4    Perrimon, N.5    Hannon, G.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.