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Volumn 5, Issue 11, 2007, Pages 2534-2559

Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans

(13)  Begun, David J a   Holloway, Alisha K a   Stevens, Kristian a   Hillier, LaDeana W b   Poh, Yu Ping a,c,d   Hahn, Matthew W e,f   Nista, Phillip M e   Jones, Corbin D g,h   Kern, Andrew D a,i   Dewey, Colin N j   Pachter, Lior k   Myers, Eugene k   Langley, Charles H a  


Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CHROMOSOME ARM; CONTROLLED STUDY; DNA POLYMORPHISM; DROSOPHILA; DROSOPHILA SIMULANS; DROSOPHILA YAKUBA; EMBRYO; FEMALE; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOME; GENOME ANALYSIS; GENOMICS; HYPOTHESIS; MALE; MOLECULAR EVOLUTION; NONHUMAN; POPULATION GENETICS; PROTEIN ASSEMBLY; X CHROMOSOME; ANIMAL; BIOLOGICAL MODEL; CHROMOSOME MAP; CLASSIFICATION; GENE LINKAGE DISEQUILIBRIUM; GENETIC POLYMORPHISM; GENETICS; MOLECULAR GENETICS;

EID: 35948940895     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.0050310     Document Type: Article
Times cited : (528)

References (140)
  • 1
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • Charlesworth B, Morgan MT, Charlesworth D (1993) The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 2
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson RR, Kreitman M, Aguade M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguade, M.3
  • 4
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 6
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard Smith J, Haigh J (1974) The hitch-hiking effect of a favourable gene. Genet Res 23: 23-35.
    • (1974) Genet Res , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 7
    • 0026342994 scopus 로고
    • Molecular population genetics of the distal portion of the X chromosome in Drosophila: Evidence for genetic hitchhiking of the yellow-achaete region
    • Begun DJ, Aquadro CF (1991) Molecular population genetics of the distal portion of the X chromosome in Drosophila: evidence for genetic hitchhiking of the yellow-achaete region. Genetics 129: 1147-1158.
    • (1991) Genetics , vol.129 , pp. 1147-1158
    • Begun, D.J.1    Aquadro, C.F.2
  • 8
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • Begun DJ, Aquadro CF (1992) Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 9
    • 0026322339 scopus 로고
    • Lack of polymorphism on the Drosophila fourth chromosome resulting from selection
    • Berry AJ, Ajioka JW, Kreitman M (1991) Lack of polymorphism on the Drosophila fourth chromosome resulting from selection. Genetics 129: 1111-1117.
    • (1991) Genetics , vol.129 , pp. 1111-1117
    • Berry, A.J.1    Ajioka, J.W.2    Kreitman, M.3
  • 10
    • 0027450803 scopus 로고
    • Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans
    • Langley CH, MacDonald J, Miyashita N, Aguade M (1993) Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans. Proc Natl Acad Sci U S A 90: 1800-1803.
    • (1993) Proc Natl Acad Sci U S A , vol.90 , pp. 1800-1803
    • Langley, C.H.1    MacDonald, J.2    Miyashita, N.3    Aguade, M.4
  • 11
    • 0037186564 scopus 로고    scopus 로고
    • Adaptive protein evolution in Drosophila
    • Smith NG, Eyre-Walker A (2002) Adaptive protein evolution in Drosophila. Nature 415: 1022-1024.
    • (2002) Nature , vol.415 , pp. 1022-1024
    • Smith, N.G.1    Eyre-Walker, A.2
  • 13
    • 0000792280 scopus 로고
    • Historical biogeography of the Drosophila melanogaster species subgroup
    • Lachaise D, Cariou ML, David JR, Lemeunier F, Tsacas L, et al. (1988) Historical biogeography of the Drosophila melanogaster species subgroup. Evol Biol 22: 159-225.
    • (1988) Evol Biol , vol.22 , pp. 159-225
    • Lachaise, D.1    Cariou, M.L.2    David, J.R.3    Lemeunier, F.4    Tsacas, L.5
  • 14
    • 84968961714 scopus 로고
    • A new species closely resembling Drosophila melanogaster
    • Sturtevant AH (1919) A new species closely resembling Drosophila melanogaster. Psyche 26: 153-155.
    • (1919) Psyche , vol.26 , pp. 153-155
    • Sturtevant, A.H.1
  • 15
    • 0002288103 scopus 로고
    • Contributions to the genetics of Drosophila simulans and Drosophila melanogaster
    • Sturtevant AH (1929) Contributions to the genetics of Drosophila simulans and Drosophila melanogaster. Publs Carnegie Instn 399: 1-62.
    • (1929) Publs Carnegie Instn , vol.399 , pp. 1-62
    • Sturtevant, A.H.1
  • 16
    • 3843103748 scopus 로고    scopus 로고
    • Linking phylogenetics with population genetics to reconstruct the geographic origin of a species
    • Dean MD, Ballard JW (2004) Linking phylogenetics with population genetics to reconstruct the geographic origin of a species. Mol Phylogenet Evol 32: 998-1009.
    • (2004) Mol Phylogenet Evol , vol.32 , pp. 998-1009
    • Dean, M.D.1    Ballard, J.W.2
  • 17
    • 84966183313 scopus 로고
    • Mitochondrial DNA variability in Drosophila simulans: Quasi absence of polymorphism within each of the three cytoplasmic races
    • Baba-Aissa F, Solignac M, Dennebouy N, David JR (1988) Mitochondrial DNA variability in Drosophila simulans: quasi absence of polymorphism within each of the three cytoplasmic races. Heredity 61: 419-426.
    • (1988) Heredity , vol.61 , pp. 419-426
    • Baba-Aissa, F.1    Solignac, M.2    Dennebouy, N.3    David, J.R.4
  • 19
    • 0034705169 scopus 로고    scopus 로고
    • Reduced X-linked nucleotide polymorphism in Drosophila simulans
    • Begun DJ, Whitley P (2000) Reduced X-linked nucleotide polymorphism in Drosophila simulans. Proc Natl Acad Sci U S A 97: 5960-5965.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 5960-5965
    • Begun, D.J.1    Whitley, P.2
  • 20
    • 27144491328 scopus 로고    scopus 로고
    • Adaptive evolution of non-coding DNA in Drosophila
    • Andolfatto P (2005) Adaptive evolution of non-coding DNA in Drosophila. Nature 437: 1149-1152.
    • (2005) Nature , vol.437 , pp. 1149-1152
    • Andolfatto, P.1
  • 21
    • 33745612972 scopus 로고    scopus 로고
    • Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison
    • Halligan DL, Keightley PD (2006) Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. Genome Res 16: 875-884.
    • (2006) Genome Res , vol.16 , pp. 875-884
    • Halligan, D.L.1    Keightley, P.D.2
  • 22
    • 10344256696 scopus 로고    scopus 로고
    • Patterns of polymorphism and divergence from noncoding sequences of Drosophila melanogaster and D. simulans: Evidence for nonequilibrium processes
    • Kern AD, Begun DJ (2005) Patterns of polymorphism and divergence from noncoding sequences of Drosophila melanogaster and D. simulans: evidence for nonequilibrium processes. Mol Biol Evol 22: 51-62.
    • (2005) Mol Biol Evol , vol.22 , pp. 51-62
    • Kern, A.D.1    Begun, D.J.2
  • 23
    • 0023064998 scopus 로고    scopus 로고
    • Li WH (1987) Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J Mol Evol 24: 337-345.
    • Li WH (1987) Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J Mol Evol 24: 337-345.
  • 24
    • 0030034357 scopus 로고    scopus 로고
    • Intraspecific nuclear DNA variation in Drosophila
    • Moriyama EN, Powell JR (1996) Intraspecific nuclear DNA variation in Drosophila. Mol Biol Evol 13: 261-277.
    • (1996) Mol Biol Evol , vol.13 , pp. 261-277
    • Moriyama, E.N.1    Powell, J.R.2
  • 25
    • 0031658304 scopus 로고    scopus 로고
    • The correlation between synonymous and nonsynonymous substitutions in Drosophila: Mutation, selection or relaxed constraints?
    • Comeron JM, Kreitman M (1998) The correlation between synonymous and nonsynonymous substitutions in Drosophila: mutation, selection or relaxed constraints? Genetics 150: 767-775.
    • (1998) Genetics , vol.150 , pp. 767-775
    • Comeron, J.M.1    Kreitman, M.2
  • 26
    • 0035155844 scopus 로고    scopus 로고
    • Substitution rates in Drosophila nuclear genes: Implications for translational selection
    • Dunn KA, Bielawski JP, Yang Z (2001) Substitution rates in Drosophila nuclear genes: implications for translational selection. Genetics 157: 295-305.
    • (2001) Genetics , vol.157 , pp. 295-305
    • Dunn, K.A.1    Bielawski, J.P.2    Yang, Z.3
  • 27
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • Li WH, Wu CI, Luo CC (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 2: 150-174.
    • (1985) Mol Biol Evol , vol.2 , pp. 150-174
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 28
    • 0033551151 scopus 로고    scopus 로고
    • Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
    • Duret L, Mouchiroud D (1999) Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc Natl Acad Sci U S A 96: 4482-4487.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 4482-4487
    • Duret, L.1    Mouchiroud, D.2
  • 30
    • 25844481290 scopus 로고    scopus 로고
    • Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
    • Haddrill PR, Charlesworth B, Halligan DL, Andolfatto P (2005) Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol 6: R67.
    • (2005) Genome Biol , vol.6
    • Haddrill, P.R.1    Charlesworth, B.2    Halligan, D.L.3    Andolfatto, P.4
  • 31
    • 33846047594 scopus 로고    scopus 로고
    • Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
    • Haag-Liautard C, Dorris M, Maside X, Macaskill S, Halligan DL, et al. (2007) Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 445: 82-85.
    • (2007) Nature , vol.445 , pp. 82-85
    • Haag-Liautard, C.1    Dorris, M.2    Maside, X.3    Macaskill, S.4    Halligan, D.L.5
  • 32
    • 0035807820 scopus 로고    scopus 로고
    • Association between divergence and interspersed repeats in mammalian noncoding genomic DNA
    • Chiaromonte F, Yang S, Elnitski L, Yap VB, Miller W, et al. (2001) Association between divergence and interspersed repeats in mammalian noncoding genomic DNA. Proc Natl Acad Sci U S A 98: 14503-14508.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 14503-14508
    • Chiaromonte, F.1    Yang, S.2    Elnitski, L.3    Yap, V.B.4    Miller, W.5
  • 33
    • 0031891484 scopus 로고    scopus 로고
    • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups
    • Petrov DA, Hartl DL (1998) High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol Biol Evol 15: 293-302.
    • (1998) Mol Biol Evol , vol.15 , pp. 293-302
    • Petrov, D.A.1    Hartl, D.L.2
  • 34
    • 0001263587 scopus 로고
    • Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster
    • Aguade M, Miyashita N, Langley CH (1989) Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster. Genetics 122: 607-615.
    • (1989) Genetics , vol.122 , pp. 607-615
    • Aguade, M.1    Miyashita, N.2    Langley, C.H.3
  • 35
    • 0026720402 scopus 로고
    • Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster
    • Martin-Campos JM, Comeron JM, Miyashita N, Aguade M (1992) Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster. Genetics 130: 805-816.
    • (1992) Genetics , vol.130 , pp. 805-816
    • Martin-Campos, J.M.1    Comeron, J.M.2    Miyashita, N.3    Aguade, M.4
  • 36
    • 0029822730 scopus 로고    scopus 로고
    • Reduced variation at concertina, a heterochromatic locus in Drosophila
    • Wayne ML, Kreitman M (1996) Reduced variation at concertina, a heterochromatic locus in Drosophila. Genet Res 68: 101-108.
    • (1996) Genet Res , vol.68 , pp. 101-108
    • Wayne, M.L.1    Kreitman, M.2
  • 37
    • 0036964070 scopus 로고    scopus 로고
    • Molecular population genetics of Xdh and the evolution of base composition in Drosophila
    • Begun DJ, Whitley P (2002) Molecular population genetics of Xdh and the evolution of base composition in Drosophila. Genetics 162: 1725-1735.
    • (2002) Genetics , vol.162 , pp. 1725-1735
    • Begun, D.J.1    Whitley, P.2
  • 38
    • 0346361874 scopus 로고    scopus 로고
    • Recombination, dominance and selection on amino acid polymorphism in the Drosophila genome: Contrasting patterns on the X and fourth chromosomes
    • Sheldahl LA, Weinreich DM, Rand DM (2003) Recombination, dominance and selection on amino acid polymorphism in the Drosophila genome: contrasting patterns on the X and fourth chromosomes. Genetics 165: 1195-1208.
    • (2003) Genetics , vol.165 , pp. 1195-1208
    • Sheldahl, L.A.1    Weinreich, D.M.2    Rand, D.M.3
  • 39
    • 0004295399 scopus 로고
    • A laboratory handbook and manual. Cold Spring Harbor NY, Cold Spring Harbor Press
    • Ashburner M (1989) Drosophila: A laboratory handbook and manual. Cold Spring Harbor (NY): Cold Spring Harbor Press.
    • (1989) Drosophila
    • Ashburner, M.1
  • 40
    • 0021749591 scopus 로고
    • The population genetics of haplodiploids and X-linked genes
    • Avery PJ (1984) The population genetics of haplodiploids and X-linked genes. Genet Res 44: 321-341.
    • (1984) Genet Res , vol.44 , pp. 321-341
    • Avery, P.J.1
  • 41
    • 33746218184 scopus 로고    scopus 로고
    • Evolution on the X chromosome: Unusual patterns and processes
    • Vicoso B, Charlesworth B (2006) Evolution on the X chromosome: unusual patterns and processes. Nat Rev Genet 7: 645-653.
    • (2006) Nat Rev Genet , vol.7 , pp. 645-653
    • Vicoso, B.1    Charlesworth, B.2
  • 42
    • 0023501735 scopus 로고
    • The relative rates of evolution of sex chromosomes and autosomes
    • Charlesworth B, Coyne JA, Barton NH (1987) The relative rates of evolution of sex chromosomes and autosomes. Am Nat 130: 113-146.
    • (1987) Am Nat , vol.130 , pp. 113-146
    • Charlesworth, B.1    Coyne, J.A.2    Barton, N.H.3
  • 44
    • 33645505597 scopus 로고    scopus 로고
    • X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution
    • Thornton K, Bachtrog D, Andolfatto P (2006) X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution. Genome Res 16: 498-504.
    • (2006) Genome Res , vol.16 , pp. 498-504
    • Thornton, K.1    Bachtrog, D.2    Andolfatto, P.3
  • 45
    • 33749583346 scopus 로고    scopus 로고
    • Intron length evolution in Drosophila
    • Presgraves DC (2006) Intron length evolution in Drosophila. Mol Biol Evol 23: 2203-2213.
    • (2006) Mol Biol Evol , vol.23 , pp. 2203-2213
    • Presgraves, D.C.1
  • 46
    • 33645530936 scopus 로고    scopus 로고
    • High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome
    • Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI (2006) High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes Dev 20: 848-857.
    • (2006) Genes Dev , vol.20 , pp. 848-857
    • Alekseyenko, A.A.1    Larschan, E.2    Lai, W.R.3    Park, P.J.4    Kuroda, M.I.5
  • 47
    • 33645520163 scopus 로고    scopus 로고
    • Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex
    • Gilfillan GD, Straub T, de Wit E, Greil F, Lamm R, et al. (2006) Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. Genes Dev 20: 858-870.
    • (2006) Genes Dev , vol.20 , pp. 858-870
    • Gilfillan, G.D.1    Straub, T.2    de Wit, E.3    Greil, F.4    Lamm, R.5
  • 48
    • 33645516399 scopus 로고    scopus 로고
    • X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila
    • Legube G, McWeeney SK, Lercher MJ, Akhtar A (2006) X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila. Genes Dev 20: 871-883.
    • (2006) Genes Dev , vol.20 , pp. 871-883
    • Legube, G.1    McWeeney, S.K.2    Lercher, M.J.3    Akhtar, A.4
  • 49
    • 33644870525 scopus 로고    scopus 로고
    • Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila
    • Mendjan S, Taipale M, Kind J, Holz H, Gebhardt P, et al. (2006) Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila. Mol Cell 21: 811-823.
    • (2006) Mol Cell , vol.21 , pp. 811-823
    • Mendjan, S.1    Taipale, M.2    Kind, J.3    Holz, H.4    Gebhardt, P.5
  • 50
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • Hill WG, Robertson A (1966) The effect of linkage on limits to artificial selection. Genet Res 8: 269-294.
    • (1966) Genet Res , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 53
    • 0013847439 scopus 로고
    • Synthesis of ribonucleic acid by the X-chromosomes of Drosophila melanogaster and the problem of dosage compensation
    • Mukherjee AS, Beermann W (1965) Synthesis of ribonucleic acid by the X-chromosomes of Drosophila melanogaster and the problem of dosage compensation. Nature 207: 785-786.
    • (1965) Nature , vol.207 , pp. 785-786
    • Mukherjee, A.S.1    Beermann, W.2
  • 54
    • 25144498611 scopus 로고    scopus 로고
    • The JIL-1 kinase regulates the structure of Drosophila polytene chromosomes
    • Deng H, Zhang W, Bao X, Martin JN, Girton J, et al. (2005) The JIL-1 kinase regulates the structure of Drosophila polytene chromosomes. Chromosoma 114: 173-182.
    • (2005) Chromosoma , vol.114 , pp. 173-182
    • Deng, H.1    Zhang, W.2    Bao, X.3    Martin, J.N.4    Girton, J.5
  • 55
    • 0034938613 scopus 로고    scopus 로고
    • The frequency distribution of nucleotide variation in Drosophila simulans
    • Begun DJ (2001) The frequency distribution of nucleotide variation in Drosophila simulans. Mol Biol Evol 18: 1343-1352.
    • (2001) Mol Biol Evol , vol.18 , pp. 1343-1352
    • Begun, D.J.1
  • 56
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay JC, Wu CI (2000) Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 57
    • 28644440530 scopus 로고    scopus 로고
    • The signature of positive selection on standing genetic variation
    • Przeworski M, Coop G, Wall JD (2005) The signature of positive selection on standing genetic variation. Evolution Int J Org Evolution 59: 2312-2323.
    • (2005) Evolution Int J Org Evolution , vol.59 , pp. 2312-2323
    • Przeworski, M.1    Coop, G.2    Wall, J.D.3
  • 58
    • 26444579454 scopus 로고    scopus 로고
    • X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis
    • Singh ND, Davis JC, Petrov DA (2005) X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis. Genetics 171: 145-155.
    • (2005) Genetics , vol.171 , pp. 145-155
    • Singh, N.D.1    Davis, J.C.2    Petrov, D.A.3
  • 59
    • 25144452814 scopus 로고    scopus 로고
    • Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome
    • Singh ND, Davis JC, Petrov DA (2005) Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome. J Mol Evol 61: 315-324.
    • (2005) J Mol Evol , vol.61 , pp. 315-324
    • Singh, N.D.1    Davis, J.C.2    Petrov, D.A.3
  • 60
    • 33646565963 scopus 로고    scopus 로고
    • Accurate inference and estimation in population genomics
    • Hahn MW (2006) Accurate inference and estimation in population genomics. Mol Biol Evol 23: 911-918.
    • (2006) Mol Biol Evol , vol.23 , pp. 911-918
    • Hahn, M.W.1
  • 61
    • 0342383237 scopus 로고
    • Effects of linkage on rates of molecular evolution
    • Birky CW Jr., Walsh JB (1988) Effects of linkage on rates of molecular evolution. Proc Natl Acad Sci U S A 85: 6414-6418.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 6414-6418
    • Birky Jr., C.W.1    Walsh, J.B.2
  • 63
    • 0033767383 scopus 로고    scopus 로고
    • The correlation between intron length and recombination in Drosophila. Dynamic equilibrium between mutational and selective forces
    • Comeron JM, Kreitman M (2000) The correlation between intron length and recombination in Drosophila. Dynamic equilibrium between mutational and selective forces. Genetics 156: 1175-1190.
    • (2000) Genetics , vol.156 , pp. 1175-1190
    • Comeron, J.M.1    Kreitman, M.2
  • 64
    • 0036188913 scopus 로고    scopus 로고
    • Interactions between natural selection, recombination and gene density in the genes of Drosophila
    • Hey J, Kliman RM (2002) Interactions between natural selection, recombination and gene density in the genes of Drosophila. Genetics 160: 595-608.
    • (2002) Genetics , vol.160 , pp. 595-608
    • Hey, J.1    Kliman, R.M.2
  • 65
    • 0024058618 scopus 로고
    • The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence
    • Aquadro CF, Lado KM, Noon WA (1988) The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence. Genetics 119: 875-888.
    • (1988) Genetics , vol.119 , pp. 875-888
    • Aquadro, C.F.1    Lado, K.M.2    Noon, W.A.3
  • 66
    • 0028846610 scopus 로고
    • Deleterious background selection with recombination
    • Hudson RR, Kaplan NL (1995) Deleterious background selection with recombination. Genetics 141: 1605-1617.
    • (1995) Genetics , vol.141 , pp. 1605-1617
    • Hudson, R.R.1    Kaplan, N.L.2
  • 67
    • 33845907125 scopus 로고    scopus 로고
    • Fine-scale crossover rate heterogeneity in Drosophila pseudoobscura
    • Cirulli ET, Kliman RM, Noor MA (2007) Fine-scale crossover rate heterogeneity in Drosophila pseudoobscura. J Mol Evol 64: 129-135.
    • (2007) J Mol Evol , vol.64 , pp. 129-135
    • Cirulli, E.T.1    Kliman, R.M.2    Noor, M.A.3
  • 68
    • 0018930850 scopus 로고
    • Chromosomal sites necessary for normal levels of meiotic recombination in Drosophila melanogaster. I. Evidence for and mapping of the sites
    • Hawley RS (1980) Chromosomal sites necessary for normal levels of meiotic recombination in Drosophila melanogaster. I. Evidence for and mapping of the sites. Genetics 94: 625-646.
    • (1980) Genetics , vol.94 , pp. 625-646
    • Hawley, R.S.1
  • 69
    • 0026549151 scopus 로고
    • A superfamily of Drosophila satellite related (SR) DNA repeats restricted to the X chromosome euchromatin
    • DiBartolomeis SM, Tartof KD, Jackson FR (1992) A superfamily of Drosophila satellite related (SR) DNA repeats restricted to the X chromosome euchromatin. Nucleic Acids Res 20: 1113-1116.
    • (1992) Nucleic Acids Res , vol.20 , pp. 1113-1116
    • DiBartolomeis, S.M.1    Tartof, K.D.2    Jackson, F.R.3
  • 70
    • 10644297436 scopus 로고    scopus 로고
    • Coordination of replication and transcription along a Drosophila chromosome
    • MacAlpine DM, Rodriguez HK, Bell SP (2004) Coordination of replication and transcription along a Drosophila chromosome. Genes Dev 18: 3094-3105.
    • (2004) Genes Dev , vol.18 , pp. 3094-3105
    • MacAlpine, D.M.1    Rodriguez, H.K.2    Bell, S.P.3
  • 71
    • 0036842221 scopus 로고    scopus 로고
    • Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and replication timing
    • Schubeler D, Scalzo D, Kooperberg C, van Steensel B, Delrow J, et al. (2002) Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing. Nat Genet 32: 438-442.
    • (2002) Nat Genet , vol.32 , pp. 438-442
    • Schubeler, D.1    Scalzo, D.2    Kooperberg, C.3    van Steensel, B.4    Delrow, J.5
  • 73
    • 0041317004 scopus 로고    scopus 로고
    • Natural selection drives Drosophila immune system evolution
    • Schlenke TA, Begun DJ (2003) Natural selection drives Drosophila immune system evolution. Genetics 164: 1471-1480.
    • (2003) Genetics , vol.164 , pp. 1471-1480
    • Schlenke, T.A.1    Begun, D.J.2
  • 74
    • 18844450453 scopus 로고    scopus 로고
    • Linkage disequilibrium and recent selection at three immunity receptor loci in Drosophila simulans
    • Schlenke TA, Begun DJ (2005) Linkage disequilibrium and recent selection at three immunity receptor loci in Drosophila simulans. Genetics 169: 2013-2022.
    • (2005) Genetics , vol.169 , pp. 2013-2022
    • Schlenke, T.A.1    Begun, D.J.2
  • 75
    • 0001714012 scopus 로고
    • Multilocus structure of natural populations of Hordeum spontaneum
    • Brown AH, Feldman MW, Nevo E (1980) Multilocus structure of natural populations of Hordeum spontaneum. Genetics 96: 523-536.
    • (1980) Genetics , vol.96 , pp. 523-536
    • Brown, A.H.1    Feldman, M.W.2    Nevo, E.3
  • 76
    • 0023612034 scopus 로고
    • Estimating the recombination parameter of a finite population model without selection
    • Hudson RR (1987) Estimating the recombination parameter of a finite population model without selection. Genet Res 50: 245-250.
    • (1987) Genet Res , vol.50 , pp. 245-250
    • Hudson, R.R.1
  • 77
    • 3843073210 scopus 로고    scopus 로고
    • Linkage disequilibrium as a signature of selective sweeps
    • Kim Y, Nielsen R (2004) Linkage disequilibrium as a signature of selective sweeps. Genetics 167: 1513-1524.
    • (2004) Genetics , vol.167 , pp. 1513-1524
    • Kim, Y.1    Nielsen, R.2
  • 78
    • 33646180401 scopus 로고    scopus 로고
    • The hitchhiking effect on linkage disequilibrium between linked neutral loci
    • Stephan W, Song YS, Langley CH (2006) The hitchhiking effect on linkage disequilibrium between linked neutral loci. Genetics 172: 2647-2663.
    • (2006) Genetics , vol.172 , pp. 2647-2663
    • Stephan, W.1    Song, Y.S.2    Langley, C.H.3
  • 79
    • 33745390322 scopus 로고    scopus 로고
    • Contrasted polymorphism patterns in a large sample of populations from the evolutionary genetics model Drosophila simulans
    • Baudry E, Derome N, Huet M, Veuille M (2006) Contrasted polymorphism patterns in a large sample of populations from the evolutionary genetics model Drosophila simulans. Genetics 173: 759-767.
    • (2006) Genetics , vol.173 , pp. 759-767
    • Baudry, E.1    Derome, N.2    Huet, M.3    Veuille, M.4
  • 80
    • 0029022711 scopus 로고
    • Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans
    • Begun DJ, Aquadro CF (1995) Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans. Genetics 140: 1019-1032.
    • (1995) Genetics , vol.140 , pp. 1019-1032
    • Begun, D.J.1    Aquadro, C.F.2
  • 81
    • 0032848722 scopus 로고    scopus 로고
    • Population structure among African and derived populations of Drosophila simulans: Evidence for ancient subdivision and recent admixture
    • Hamblin MT, Veuille M (1999) Population structure among African and derived populations of Drosophila simulans: evidence for ancient subdivision and recent admixture. Genetics 153: 305-317.
    • (1999) Genetics , vol.153 , pp. 305-317
    • Hamblin, M.T.1    Veuille, M.2
  • 82
    • 0023283959 scopus 로고
    • Contrasting patterns of geographic variation in the cosmopolitan sibling species Drosophila melanogaster and Drosophila simulans
    • Singh RS, Choudhary M, David JR (1987) Contrasting patterns of geographic variation in the cosmopolitan sibling species Drosophila melanogaster and Drosophila simulans. Biochem Genet 25: 27-40.
    • (1987) Biochem Genet , vol.25 , pp. 27-40
    • Singh, R.S.1    Choudhary, M.2    David, J.R.3
  • 83
    • 0346991744 scopus 로고    scopus 로고
    • A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster
    • Kauer MO, Dieringer D, Schlotterer C (2003) A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster. Genetics 165: 1137-1148.
    • (2003) Genetics , vol.165 , pp. 1137-1148
    • Kauer, M.O.1    Dieringer, D.2    Schlotterer, C.3
  • 84
    • 1242274636 scopus 로고    scopus 로고
    • Strong selective sweep associated with a transposon insertion in Drosophila simulans
    • Schlenke TA, Begun DJ (2004) Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc Natl Acad Sci U S A 101: 1626-1631.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 1626-1631
    • Schlenke, T.A.1    Begun, D.J.2
  • 85
    • 3042692452 scopus 로고    scopus 로고
    • Patterns of microsatellite variability among X chromosomes and autosomes indicate a high frequency of beneficial mutations in non-African D. simulans
    • Schofl G, Schlotterer C (2004) Patterns of microsatellite variability among X chromosomes and autosomes indicate a high frequency of beneficial mutations in non-African D. simulans. Mol Biol Evol 21: 1384-1390.
    • (2004) Mol Biol Evol , vol.21 , pp. 1384-1390
    • Schofl, G.1    Schlotterer, C.2
  • 86
    • 33750200640 scopus 로고    scopus 로고
    • Microsatellite variation and differentiation in African and non-African populations of Drosophila simulans
    • Schofl G, Schlotterer C (2006) Microsatellite variation and differentiation in African and non-African populations of Drosophila simulans. Mol Ecol 15: 3895-3905.
    • (2006) Mol Ecol , vol.15 , pp. 3895-3905
    • Schofl, G.1    Schlotterer, C.2
  • 87
    • 33750483929 scopus 로고    scopus 로고
    • Natural variation in Drosophila melanogaster diapause due to the insulin-regulated PI3-kinase
    • Williams KD, Busto M, Suster ML, So AK, Ben-Shahar Y, et al. (2006) Natural variation in Drosophila melanogaster diapause due to the insulin-regulated PI3-kinase. Proc Natl Acad Sci U S A 103: 15911-15915.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 15911-15915
    • Williams, K.D.1    Busto, M.2    Suster, M.L.3    So, A.K.4    Ben-Shahar, Y.5
  • 89
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
    • Akashi H (1995) Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
    • (1995) Genetics , vol.139 , pp. 1067-1076
    • Akashi, H.1
  • 90
    • 0032953881 scopus 로고    scopus 로고
    • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
    • Akashi H (1999) Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination. Genetics 151: 221-238.
    • (1999) Genetics , vol.151 , pp. 221-238
    • Akashi, H.1
  • 91
    • 29444452921 scopus 로고    scopus 로고
    • Molecular signatures of natural selection
    • Nielsen R (2005) Molecular signatures of natural selection. Annu Rev Genet 39: 197-218.
    • (2005) Annu Rev Genet , vol.39 , pp. 197-218
    • Nielsen, R.1
  • 92
    • 0345772211 scopus 로고    scopus 로고
    • PKD2 cation channel is required for directional sperm movement and male fertility
    • Gao Z, Ruden DM, Lu X (2003) PKD2 cation channel is required for directional sperm movement and male fertility. Curr Biol 13: 2175-2178.
    • (2003) Curr Biol , vol.13 , pp. 2175-2178
    • Gao, Z.1    Ruden, D.M.2    Lu, X.3
  • 93
    • 0346403328 scopus 로고    scopus 로고
    • A flagellar polycystin-2 homolog required for male fertility in Drosophila
    • Watnick TJ, Jin Y, Matunis E, Kernan MJ, Montell C (2003) A flagellar polycystin-2 homolog required for male fertility in Drosophila. Curr Biol 13: 2179-2184.
    • (2003) Curr Biol , vol.13 , pp. 2179-2184
    • Watnick, T.J.1    Jin, Y.2    Matunis, E.3    Kernan, M.J.4    Montell, C.5
  • 94
    • 19344368275 scopus 로고    scopus 로고
    • Multiple apoptotic caspase cascades are required in nonapoptotic roles for Drosophila spermatid individualization
    • Huh JR, Vernooy SY, Yu H, Yan N, Shi Y, et al. (2004) Multiple apoptotic caspase cascades are required in nonapoptotic roles for Drosophila spermatid individualization. PLoS Biol 2: E15.
    • (2004) PLoS Biol , vol.2
    • Huh, J.R.1    Vernooy, S.Y.2    Yu, H.3    Yan, N.4    Shi, Y.5
  • 95
    • 0034021646 scopus 로고    scopus 로고
    • A new family of adenylyl cyclase genes in the male germline of Drosophila melanogaster
    • Cann MJ, Chung E, Levin LR (2000) A new family of adenylyl cyclase genes in the male germline of Drosophila melanogaster. Dev Genes Evol 210: 200-206.
    • (2000) Dev Genes Evol , vol.210 , pp. 200-206
    • Cann, M.J.1    Chung, E.2    Levin, L.R.3
  • 96
    • 13144254216 scopus 로고    scopus 로고
    • PVF1/PVR signaling and apoptosis promotes the rotation and dorsal closure of the Drosophila male terminalia
    • Macias A, Romero NM, Martin F, Suarez L, Rosa AL, et al. (2004) PVF1/PVR signaling and apoptosis promotes the rotation and dorsal closure of the Drosophila male terminalia. Int J Dev Biol 48: 1087-1094.
    • (2004) Int J Dev Biol , vol.48 , pp. 1087-1094
    • Macias, A.1    Romero, N.M.2    Martin, F.3    Suarez, L.4    Rosa, A.L.5
  • 97
    • 0000644123 scopus 로고
    • Genetic basis of differences in genital morphology among the three sibling species of Drosophila
    • Coyne JA (1983) Genetic basis of differences in genital morphology among the three sibling species of Drosophila. Evolution Int J Org Evolution 37: 1101-1118.
    • (1983) Evolution Int J Org Evolution , vol.37 , pp. 1101-1118
    • Coyne, J.A.1
  • 98
    • 0035052650 scopus 로고    scopus 로고
    • Identification of chromosome inheritance modifiers in Drosophila melanogaster
    • Dobie KW, Kennedy CD, Velasco VM, McGrath TL, Weko J, et al. (2001) Identification of chromosome inheritance modifiers in Drosophila melanogaster. Genetics 157: 1623-1637.
    • (2001) Genetics , vol.157 , pp. 1623-1637
    • Dobie, K.W.1    Kennedy, C.D.2    Velasco, V.M.3    McGrath, T.L.4    Weko, J.5
  • 99
    • 0035103847 scopus 로고    scopus 로고
    • Adaptive evolution of Cid, a centromerespecific histone in Drosophila
    • Malik HS, Henikoff S (2001) Adaptive evolution of Cid, a centromerespecific histone in Drosophila. Genetics 157: 1293-1298.
    • (2001) Genetics , vol.157 , pp. 1293-1298
    • Malik, H.S.1    Henikoff, S.2
  • 100
    • 33745441569 scopus 로고    scopus 로고
    • Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila
    • doi:10.1371/journal.pgen.0010009
    • Vermaak D, Henikoff S, Malik HS (2005) Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. PLoS Genet 1: e9. doi:10.1371/journal.pgen.0010009.
    • (2005) PLoS Genet , vol.1
    • Vermaak, D.1    Henikoff, S.2    Malik, H.S.3
  • 101
    • 0027604734 scopus 로고
    • The reproductive incompatibility system in Drosophila simulans: DAPI-staining analysis of the Wolbachia symbionts in sperm cysts
    • Bressac C, Rousset F (1993) The reproductive incompatibility system in Drosophila simulans: DAPI-staining analysis of the Wolbachia symbionts in sperm cysts. J Invertebr Pathol 61: 226-230.
    • (1993) J Invertebr Pathol , vol.61 , pp. 226-230
    • Bressac, C.1    Rousset, F.2
  • 102
    • 0032696707 scopus 로고    scopus 로고
    • Small sperm, uniparental inheritance and selfish cytoplasmic elements: A comparison of two models
    • Randerson JP, Hurst LD (1999) Small sperm, uniparental inheritance and selfish cytoplasmic elements: a comparison of two models. J Evol Biol 12: 1110-1124.
    • (1999) J Evol Biol , vol.12 , pp. 1110-1124
    • Randerson, J.P.1    Hurst, L.D.2
  • 103
    • 0034060081 scopus 로고    scopus 로고
    • Offsetting effects of Wolbachia infection and heat shock on sperm production in Drosophila simulans: Analyses of fecundity, fertility and accessory gland proteins
    • Snook RR, Cleland SY, Wolfner MF, Karr TL (2000) Offsetting effects of Wolbachia infection and heat shock on sperm production in Drosophila simulans: analyses of fecundity, fertility and accessory gland proteins. Genetics 155: 167-178.
    • (2000) Genetics , vol.155 , pp. 167-178
    • Snook, R.R.1    Cleland, S.Y.2    Wolfner, M.F.3    Karr, T.L.4
  • 104
    • 33750452661 scopus 로고    scopus 로고
    • Widespread adaptive evolution of Drosophila genes with sex-biased expression
    • Proschel M, Zhang Z, Parsch J (2006) Widespread adaptive evolution of Drosophila genes with sex-biased expression. Genetics 174: 893-900.
    • (2006) Genetics , vol.174 , pp. 893-900
    • Proschel, M.1    Zhang, Z.2    Parsch, J.3
  • 105
    • 0029668422 scopus 로고    scopus 로고
    • Sexually antagonistic male adaptation triggered by experimental arrest of female evolution
    • Rice WR (1996) Sexually antagonistic male adaptation triggered by experimental arrest of female evolution. Nature 381: 232-234.
    • (1996) Nature , vol.381 , pp. 232-234
    • Rice, W.R.1
  • 106
    • 33845884309 scopus 로고    scopus 로고
    • Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96
    • Presgraves DC, Stephan W (2007) Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96. Mol Biol Evol 24: 306-314.
    • (2007) Mol Biol Evol , vol.24 , pp. 306-314
    • Presgraves, D.C.1    Stephan, W.2
  • 108
    • 0030774803 scopus 로고    scopus 로고
    • The sex-ratio trait in Drosophila simulans: Genetic analysis of distortion and suppression
    • Cazemajor M, Landre C, Montchamp-Moreau C (1997) The sex-ratio trait in Drosophila simulans: genetic analysis of distortion and suppression. Genetics 147: 635-642.
    • (1997) Genetics , vol.147 , pp. 635-642
    • Cazemajor, M.1    Landre, C.2    Montchamp-Moreau, C.3
  • 109
    • 0035677532 scopus 로고    scopus 로고
    • Sex chromosome meiotic drive
    • Jaenike J (2001) Sex chromosome meiotic drive. Ann Rev Ecol System 32: 25-49.
    • (2001) Ann Rev Ecol System , vol.32 , pp. 25-49
    • Jaenike, J.1
  • 110
    • 0037044727 scopus 로고    scopus 로고
    • Sperm-female coevolution in Drosophila
    • Miller GT, Pitnick S (2002) Sperm-female coevolution in Drosophila. Science 298: 1230-1233.
    • (2002) Science , vol.298 , pp. 1230-1233
    • Miller, G.T.1    Pitnick, S.2
  • 112
    • 33344471142 scopus 로고    scopus 로고
    • Regulation of gene expression by alternative untranslated regions
    • Hughes TA (2006) Regulation of gene expression by alternative untranslated regions. Trends Genet 22: 119-122.
    • (2006) Trends Genet , vol.22 , pp. 119-122
    • Hughes, T.A.1
  • 113
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
    • Akashi H (1994) Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics 136: 927-935.
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 114
    • 0025941139 scopus 로고
    • The selection-mutation-drift theory of synonymous codon usage
    • Bulmer M (1991) The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
    • (1991) Genetics , vol.129 , pp. 897-907
    • Bulmer, M.1
  • 115
    • 0029091329 scopus 로고
    • A test for adaptive change in DNA sequences controlling transcription
    • Jenkins DL, Ortori CA, Brookfield JF (1995) A test for adaptive change in DNA sequences controlling transcription. Proc Biol Sci 261: 203-207.
    • (1995) Proc Biol Sci , vol.261 , pp. 203-207
    • Jenkins, D.L.1    Ortori, C.A.2    Brookfield, J.F.3
  • 116
    • 1542347028 scopus 로고    scopus 로고
    • Kohn MH, Fang S, Wu CI (2004) Inference of positive and negative selection on the 5′ regulatory regions of Drosophila genes. Mol Biol Evol 21: 374-383.
    • Kohn MH, Fang S, Wu CI (2004) Inference of positive and negative selection on the 5′ regulatory regions of Drosophila genes. Mol Biol Evol 21: 374-383.
  • 117
    • 3042544623 scopus 로고    scopus 로고
    • The genomic rate of adaptive amino acid substitution in Drosophila
    • Bierne N, Eyre-Walker A (2004) The genomic rate of adaptive amino acid substitution in Drosophila. Mol Biol Evol 21: 1350-1360.
    • (2004) Mol Biol Evol , vol.21 , pp. 1350-1360
    • Bierne, N.1    Eyre-Walker, A.2
  • 118
    • 0036961517 scopus 로고    scopus 로고
    • Genomic effects of nucleotide substitutions in Drosophila simulans
    • Kern AD, Jones CD, Begun DJ (2002) Genomic effects of nucleotide substitutions in Drosophila simulans. Genetics 162: 1753-1761.
    • (2002) Genetics , vol.162 , pp. 1753-1761
    • Kern, A.D.1    Jones, C.D.2    Begun, D.J.3
  • 120
    • 33644780844 scopus 로고    scopus 로고
    • GC-biased segregation of noncoding polymorphisms in Drosophila
    • Galtier N, Bazin E, Bierne N (2006) GC-biased segregation of noncoding polymorphisms in Drosophila. Genetics 172: 221-228.
    • (2006) Genetics , vol.172 , pp. 221-228
    • Galtier, N.1    Bazin, E.2    Bierne, N.3
  • 121
    • 0019426751 scopus 로고
    • Cloning of DNA sequences from the white locus of D. melanogaster by a novel and general method
    • Bingham PM, Levis R, Rubin GM (1981) Cloning of DNA sequences from the white locus of D. melanogaster by a novel and general method. Cell 25: 693-704.
    • (1981) Cell , vol.25 , pp. 693-704
    • Bingham, P.M.1    Levis, R.2    Rubin, G.M.3
  • 123
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent WJ (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 124
    • 0017071682 scopus 로고
    • Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences
    • Lemeunier F, Ashburner MA (1976) Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences. Proc R Soc Lond B Biol Sci 193: 275-294.
    • (1976) Proc R Soc Lond B Biol Sci , vol.193 , pp. 275-294
    • Lemeunier, F.1    Ashburner, M.A.2
  • 125
    • 0030833564 scopus 로고    scopus 로고
    • ReAligner: A program for refining DNA sequence multi-alignments
    • Anson EL, Myers EW (1997) ReAligner: a program for refining DNA sequence multi-alignments. J Comput Biol 4: 369-383.
    • (1997) J Comput Biol , vol.4 , pp. 369-383
    • Anson, E.L.1    Myers, E.W.2
  • 126
    • 1842667852 scopus 로고    scopus 로고
    • MAVID: Constrained ancestral alignment of multiple sequences
    • Bray N, Pachter L (2004) MAVID: constrained ancestral alignment of multiple sequences. Genome Res 14: 693-699.
    • (2004) Genome Res , vol.14 , pp. 693-699
    • Bray, N.1    Pachter, L.2
  • 128
    • 0003752712 scopus 로고
    • Sunderland Massachusetts, Sinauer Associates
    • Weir BS (1990) Genetic data analysis. Sunderland (Massachusetts): Sinauer Associates.
    • (1990) Genetic data analysis
    • Weir, B.S.1
  • 129
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 130
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HN, editor, New York: Academic Press
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN, editor. Mammalian protein metabolism. New York: Academic Press.
    • (1969) Mammalian protein metabolism
    • Jukes, T.H.1    Cantor, C.R.2
  • 131
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 133
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 134
    • 0030000951 scopus 로고    scopus 로고
    • Excess amino acid polymorphism in mitochondrial DNA: Contrasts among genes from Drosophila, mice, and humans
    • Rand DM, Kann LM (1996) Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans. Mol Biol Evol 13: 735-748.
    • (1996) Mol Biol Evol , vol.13 , pp. 735-748
    • Rand, D.M.1    Kann, L.M.2
  • 136
    • 10844274729 scopus 로고    scopus 로고
    • Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection
    • Swanson WJ, Wong A, Wolfner MF, Aquadro CF (2004) Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection. Genetics 168: 1457-1465.
    • (2004) Genetics , vol.168 , pp. 1457-1465
    • Swanson, W.J.1    Wong, A.2    Wolfner, M.F.3    Aquadro, C.F.4
  • 137
    • 33745879785 scopus 로고    scopus 로고
    • Mating-responsive genes in reproductive tissues of female Drosophila melanogaster
    • Mack PD, Kapelnikov A, Heifetz Y, Bender M (2006) Mating-responsive genes in reproductive tissues of female Drosophila melanogaster. Proc Natl Acad Sci U S A 103: 10358-10363.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 10358-10363
    • Mack, P.D.1    Kapelnikov, A.2    Heifetz, Y.3    Bender, M.4
  • 138
    • 4844222675 scopus 로고    scopus 로고
    • A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
    • Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, et al. (2004) A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults. Genome Biol 5: R40.
    • (2004) Genome Biol , vol.5
    • Parisi, M.1    Nuttall, R.2    Edwards, P.3    Minor, J.4    Naiman, D.5
  • 139
    • 0037183901 scopus 로고    scopus 로고
    • Gene expression during the life cycle of Drosophila melanogaster
    • Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, et al. (2002) Gene expression during the life cycle of Drosophila melanogaster. Science 297: 2270-2275.
    • (2002) Science , vol.297 , pp. 2270-2275
    • Arbeitman, M.N.1    Furlong, E.E.2    Imam, F.3    Johnson, E.4    Null, B.H.5
  • 140
    • 0345600247 scopus 로고    scopus 로고
    • A protein interaction map of Drosophila melanogaster
    • Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, et al. (2003) A protein interaction map of Drosophila melanogaster. Science 302: 1727-1736.
    • (2003) Science , vol.302 , pp. 1727-1736
    • Giot, L.1    Bader, J.S.2    Brouwer, C.3    Chaudhuri, A.4    Kuang, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.