-
1
-
-
0027305597
-
The effect of deleterious mutations on neutral molecular variation
-
Charlesworth B, Morgan MT, Charlesworth D (1993) The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
-
(1993)
Genetics
, vol.134
, pp. 1289-1303
-
-
Charlesworth, B.1
Morgan, M.T.2
Charlesworth, D.3
-
2
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson RR, Kreitman M, Aguade M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguade, M.3
-
4
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald JH, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
6
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Maynard Smith J, Haigh J (1974) The hitch-hiking effect of a favourable gene. Genet Res 23: 23-35.
-
(1974)
Genet Res
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.1
Haigh, J.2
-
7
-
-
0026342994
-
Molecular population genetics of the distal portion of the X chromosome in Drosophila: Evidence for genetic hitchhiking of the yellow-achaete region
-
Begun DJ, Aquadro CF (1991) Molecular population genetics of the distal portion of the X chromosome in Drosophila: evidence for genetic hitchhiking of the yellow-achaete region. Genetics 129: 1147-1158.
-
(1991)
Genetics
, vol.129
, pp. 1147-1158
-
-
Begun, D.J.1
Aquadro, C.F.2
-
8
-
-
0026529344
-
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
-
Begun DJ, Aquadro CF (1992) Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
-
(1992)
Nature
, vol.356
, pp. 519-520
-
-
Begun, D.J.1
Aquadro, C.F.2
-
9
-
-
0026322339
-
Lack of polymorphism on the Drosophila fourth chromosome resulting from selection
-
Berry AJ, Ajioka JW, Kreitman M (1991) Lack of polymorphism on the Drosophila fourth chromosome resulting from selection. Genetics 129: 1111-1117.
-
(1991)
Genetics
, vol.129
, pp. 1111-1117
-
-
Berry, A.J.1
Ajioka, J.W.2
Kreitman, M.3
-
10
-
-
0027450803
-
Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans
-
Langley CH, MacDonald J, Miyashita N, Aguade M (1993) Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans. Proc Natl Acad Sci U S A 90: 1800-1803.
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 1800-1803
-
-
Langley, C.H.1
MacDonald, J.2
Miyashita, N.3
Aguade, M.4
-
11
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
Smith NG, Eyre-Walker A (2002) Adaptive protein evolution in Drosophila. Nature 415: 1022-1024.
-
(2002)
Nature
, vol.415
, pp. 1022-1024
-
-
Smith, N.G.1
Eyre-Walker, A.2
-
12
-
-
33847781444
-
Adaptive genic evolution in the Drosophila genomes
-
Shapiro JA, Huang W, Zhang C, Hubisz MJ, Lu J, et al. (2007) Adaptive genic evolution in the Drosophila genomes. Proc Natl Acad Sci U S A 104: 2271-2276.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 2271-2276
-
-
Shapiro, J.A.1
Huang, W.2
Zhang, C.3
Hubisz, M.J.4
Lu, J.5
-
13
-
-
0000792280
-
Historical biogeography of the Drosophila melanogaster species subgroup
-
Lachaise D, Cariou ML, David JR, Lemeunier F, Tsacas L, et al. (1988) Historical biogeography of the Drosophila melanogaster species subgroup. Evol Biol 22: 159-225.
-
(1988)
Evol Biol
, vol.22
, pp. 159-225
-
-
Lachaise, D.1
Cariou, M.L.2
David, J.R.3
Lemeunier, F.4
Tsacas, L.5
-
14
-
-
84968961714
-
A new species closely resembling Drosophila melanogaster
-
Sturtevant AH (1919) A new species closely resembling Drosophila melanogaster. Psyche 26: 153-155.
-
(1919)
Psyche
, vol.26
, pp. 153-155
-
-
Sturtevant, A.H.1
-
15
-
-
0002288103
-
Contributions to the genetics of Drosophila simulans and Drosophila melanogaster
-
Sturtevant AH (1929) Contributions to the genetics of Drosophila simulans and Drosophila melanogaster. Publs Carnegie Instn 399: 1-62.
-
(1929)
Publs Carnegie Instn
, vol.399
, pp. 1-62
-
-
Sturtevant, A.H.1
-
16
-
-
3843103748
-
Linking phylogenetics with population genetics to reconstruct the geographic origin of a species
-
Dean MD, Ballard JW (2004) Linking phylogenetics with population genetics to reconstruct the geographic origin of a species. Mol Phylogenet Evol 32: 998-1009.
-
(2004)
Mol Phylogenet Evol
, vol.32
, pp. 998-1009
-
-
Dean, M.D.1
Ballard, J.W.2
-
17
-
-
84966183313
-
Mitochondrial DNA variability in Drosophila simulans: Quasi absence of polymorphism within each of the three cytoplasmic races
-
Baba-Aissa F, Solignac M, Dennebouy N, David JR (1988) Mitochondrial DNA variability in Drosophila simulans: quasi absence of polymorphism within each of the three cytoplasmic races. Heredity 61: 419-426.
-
(1988)
Heredity
, vol.61
, pp. 419-426
-
-
Baba-Aissa, F.1
Solignac, M.2
Dennebouy, N.3
David, J.R.4
-
18
-
-
0141853948
-
PCAP: A whole-genome assembly program
-
Huang X, Wang J, Aluru S, Yang SP, Hillier L (2003) PCAP: a whole-genome assembly program. Genome Res 13: 2164-2170.
-
(2003)
Genome Res
, vol.13
, pp. 2164-2170
-
-
Huang, X.1
Wang, J.2
Aluru, S.3
Yang, S.P.4
Hillier, L.5
-
19
-
-
0034705169
-
Reduced X-linked nucleotide polymorphism in Drosophila simulans
-
Begun DJ, Whitley P (2000) Reduced X-linked nucleotide polymorphism in Drosophila simulans. Proc Natl Acad Sci U S A 97: 5960-5965.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 5960-5965
-
-
Begun, D.J.1
Whitley, P.2
-
20
-
-
27144491328
-
Adaptive evolution of non-coding DNA in Drosophila
-
Andolfatto P (2005) Adaptive evolution of non-coding DNA in Drosophila. Nature 437: 1149-1152.
-
(2005)
Nature
, vol.437
, pp. 1149-1152
-
-
Andolfatto, P.1
-
21
-
-
33745612972
-
Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison
-
Halligan DL, Keightley PD (2006) Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. Genome Res 16: 875-884.
-
(2006)
Genome Res
, vol.16
, pp. 875-884
-
-
Halligan, D.L.1
Keightley, P.D.2
-
22
-
-
10344256696
-
Patterns of polymorphism and divergence from noncoding sequences of Drosophila melanogaster and D. simulans: Evidence for nonequilibrium processes
-
Kern AD, Begun DJ (2005) Patterns of polymorphism and divergence from noncoding sequences of Drosophila melanogaster and D. simulans: evidence for nonequilibrium processes. Mol Biol Evol 22: 51-62.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 51-62
-
-
Kern, A.D.1
Begun, D.J.2
-
23
-
-
0023064998
-
-
Li WH (1987) Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J Mol Evol 24: 337-345.
-
Li WH (1987) Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J Mol Evol 24: 337-345.
-
-
-
-
24
-
-
0030034357
-
Intraspecific nuclear DNA variation in Drosophila
-
Moriyama EN, Powell JR (1996) Intraspecific nuclear DNA variation in Drosophila. Mol Biol Evol 13: 261-277.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 261-277
-
-
Moriyama, E.N.1
Powell, J.R.2
-
25
-
-
0031658304
-
The correlation between synonymous and nonsynonymous substitutions in Drosophila: Mutation, selection or relaxed constraints?
-
Comeron JM, Kreitman M (1998) The correlation between synonymous and nonsynonymous substitutions in Drosophila: mutation, selection or relaxed constraints? Genetics 150: 767-775.
-
(1998)
Genetics
, vol.150
, pp. 767-775
-
-
Comeron, J.M.1
Kreitman, M.2
-
26
-
-
0035155844
-
Substitution rates in Drosophila nuclear genes: Implications for translational selection
-
Dunn KA, Bielawski JP, Yang Z (2001) Substitution rates in Drosophila nuclear genes: implications for translational selection. Genetics 157: 295-305.
-
(2001)
Genetics
, vol.157
, pp. 295-305
-
-
Dunn, K.A.1
Bielawski, J.P.2
Yang, Z.3
-
27
-
-
0022005270
-
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
-
Li WH, Wu CI, Luo CC (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 2: 150-174.
-
(1985)
Mol Biol Evol
, vol.2
, pp. 150-174
-
-
Li, W.H.1
Wu, C.I.2
Luo, C.C.3
-
28
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
-
Duret L, Mouchiroud D (1999) Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc Natl Acad Sci U S A 96: 4482-4487.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
29
-
-
0347568598
-
The relationship of protein conservation and sequence length
-
Lipman DJ, Souvorov A, Koonin EV, Panchenko AR, Tatusova TA (2002) The relationship of protein conservation and sequence length. BMC Evol Biol 2: 20.
-
(2002)
BMC Evol Biol
, vol.2
, pp. 20
-
-
Lipman, D.J.1
Souvorov, A.2
Koonin, E.V.3
Panchenko, A.R.4
Tatusova, T.A.5
-
30
-
-
25844481290
-
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
-
Haddrill PR, Charlesworth B, Halligan DL, Andolfatto P (2005) Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol 6: R67.
-
(2005)
Genome Biol
, vol.6
-
-
Haddrill, P.R.1
Charlesworth, B.2
Halligan, D.L.3
Andolfatto, P.4
-
31
-
-
33846047594
-
Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
-
Haag-Liautard C, Dorris M, Maside X, Macaskill S, Halligan DL, et al. (2007) Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 445: 82-85.
-
(2007)
Nature
, vol.445
, pp. 82-85
-
-
Haag-Liautard, C.1
Dorris, M.2
Maside, X.3
Macaskill, S.4
Halligan, D.L.5
-
32
-
-
0035807820
-
Association between divergence and interspersed repeats in mammalian noncoding genomic DNA
-
Chiaromonte F, Yang S, Elnitski L, Yap VB, Miller W, et al. (2001) Association between divergence and interspersed repeats in mammalian noncoding genomic DNA. Proc Natl Acad Sci U S A 98: 14503-14508.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 14503-14508
-
-
Chiaromonte, F.1
Yang, S.2
Elnitski, L.3
Yap, V.B.4
Miller, W.5
-
33
-
-
0031891484
-
High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups
-
Petrov DA, Hartl DL (1998) High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol Biol Evol 15: 293-302.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 293-302
-
-
Petrov, D.A.1
Hartl, D.L.2
-
34
-
-
0001263587
-
Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster
-
Aguade M, Miyashita N, Langley CH (1989) Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster. Genetics 122: 607-615.
-
(1989)
Genetics
, vol.122
, pp. 607-615
-
-
Aguade, M.1
Miyashita, N.2
Langley, C.H.3
-
35
-
-
0026720402
-
Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster
-
Martin-Campos JM, Comeron JM, Miyashita N, Aguade M (1992) Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster. Genetics 130: 805-816.
-
(1992)
Genetics
, vol.130
, pp. 805-816
-
-
Martin-Campos, J.M.1
Comeron, J.M.2
Miyashita, N.3
Aguade, M.4
-
36
-
-
0029822730
-
Reduced variation at concertina, a heterochromatic locus in Drosophila
-
Wayne ML, Kreitman M (1996) Reduced variation at concertina, a heterochromatic locus in Drosophila. Genet Res 68: 101-108.
-
(1996)
Genet Res
, vol.68
, pp. 101-108
-
-
Wayne, M.L.1
Kreitman, M.2
-
37
-
-
0036964070
-
Molecular population genetics of Xdh and the evolution of base composition in Drosophila
-
Begun DJ, Whitley P (2002) Molecular population genetics of Xdh and the evolution of base composition in Drosophila. Genetics 162: 1725-1735.
-
(2002)
Genetics
, vol.162
, pp. 1725-1735
-
-
Begun, D.J.1
Whitley, P.2
-
38
-
-
0346361874
-
Recombination, dominance and selection on amino acid polymorphism in the Drosophila genome: Contrasting patterns on the X and fourth chromosomes
-
Sheldahl LA, Weinreich DM, Rand DM (2003) Recombination, dominance and selection on amino acid polymorphism in the Drosophila genome: contrasting patterns on the X and fourth chromosomes. Genetics 165: 1195-1208.
-
(2003)
Genetics
, vol.165
, pp. 1195-1208
-
-
Sheldahl, L.A.1
Weinreich, D.M.2
Rand, D.M.3
-
39
-
-
0004295399
-
-
A laboratory handbook and manual. Cold Spring Harbor NY, Cold Spring Harbor Press
-
Ashburner M (1989) Drosophila: A laboratory handbook and manual. Cold Spring Harbor (NY): Cold Spring Harbor Press.
-
(1989)
Drosophila
-
-
Ashburner, M.1
-
40
-
-
0021749591
-
The population genetics of haplodiploids and X-linked genes
-
Avery PJ (1984) The population genetics of haplodiploids and X-linked genes. Genet Res 44: 321-341.
-
(1984)
Genet Res
, vol.44
, pp. 321-341
-
-
Avery, P.J.1
-
41
-
-
33746218184
-
Evolution on the X chromosome: Unusual patterns and processes
-
Vicoso B, Charlesworth B (2006) Evolution on the X chromosome: unusual patterns and processes. Nat Rev Genet 7: 645-653.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 645-653
-
-
Vicoso, B.1
Charlesworth, B.2
-
42
-
-
0023501735
-
The relative rates of evolution of sex chromosomes and autosomes
-
Charlesworth B, Coyne JA, Barton NH (1987) The relative rates of evolution of sex chromosomes and autosomes. Am Nat 130: 113-146.
-
(1987)
Am Nat
, vol.130
, pp. 113-146
-
-
Charlesworth, B.1
Coyne, J.A.2
Barton, N.H.3
-
44
-
-
33645505597
-
X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution
-
Thornton K, Bachtrog D, Andolfatto P (2006) X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution. Genome Res 16: 498-504.
-
(2006)
Genome Res
, vol.16
, pp. 498-504
-
-
Thornton, K.1
Bachtrog, D.2
Andolfatto, P.3
-
45
-
-
33749583346
-
Intron length evolution in Drosophila
-
Presgraves DC (2006) Intron length evolution in Drosophila. Mol Biol Evol 23: 2203-2213.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2203-2213
-
-
Presgraves, D.C.1
-
46
-
-
33645530936
-
High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome
-
Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI (2006) High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes Dev 20: 848-857.
-
(2006)
Genes Dev
, vol.20
, pp. 848-857
-
-
Alekseyenko, A.A.1
Larschan, E.2
Lai, W.R.3
Park, P.J.4
Kuroda, M.I.5
-
47
-
-
33645520163
-
Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex
-
Gilfillan GD, Straub T, de Wit E, Greil F, Lamm R, et al. (2006) Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. Genes Dev 20: 858-870.
-
(2006)
Genes Dev
, vol.20
, pp. 858-870
-
-
Gilfillan, G.D.1
Straub, T.2
de Wit, E.3
Greil, F.4
Lamm, R.5
-
48
-
-
33645516399
-
X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila
-
Legube G, McWeeney SK, Lercher MJ, Akhtar A (2006) X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila. Genes Dev 20: 871-883.
-
(2006)
Genes Dev
, vol.20
, pp. 871-883
-
-
Legube, G.1
McWeeney, S.K.2
Lercher, M.J.3
Akhtar, A.4
-
49
-
-
33644870525
-
Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila
-
Mendjan S, Taipale M, Kind J, Holz H, Gebhardt P, et al. (2006) Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila. Mol Cell 21: 811-823.
-
(2006)
Mol Cell
, vol.21
, pp. 811-823
-
-
Mendjan, S.1
Taipale, M.2
Kind, J.3
Holz, H.4
Gebhardt, P.5
-
50
-
-
0013979181
-
The effect of linkage on limits to artificial selection
-
Hill WG, Robertson A (1966) The effect of linkage on limits to artificial selection. Genet Res 8: 269-294.
-
(1966)
Genet Res
, vol.8
, pp. 269-294
-
-
Hill, W.G.1
Robertson, A.2
-
52
-
-
33847020017
-
Global analysis of X-chromosome dosage compensation
-
Gupta V, Parisi M, Sturgill D, Nuttall R, Doctolero M, et al. (2006) Global analysis of X-chromosome dosage compensation. J Biol 5: 3.
-
(2006)
J Biol
, vol.5
, pp. 3
-
-
Gupta, V.1
Parisi, M.2
Sturgill, D.3
Nuttall, R.4
Doctolero, M.5
-
53
-
-
0013847439
-
Synthesis of ribonucleic acid by the X-chromosomes of Drosophila melanogaster and the problem of dosage compensation
-
Mukherjee AS, Beermann W (1965) Synthesis of ribonucleic acid by the X-chromosomes of Drosophila melanogaster and the problem of dosage compensation. Nature 207: 785-786.
-
(1965)
Nature
, vol.207
, pp. 785-786
-
-
Mukherjee, A.S.1
Beermann, W.2
-
54
-
-
25144498611
-
The JIL-1 kinase regulates the structure of Drosophila polytene chromosomes
-
Deng H, Zhang W, Bao X, Martin JN, Girton J, et al. (2005) The JIL-1 kinase regulates the structure of Drosophila polytene chromosomes. Chromosoma 114: 173-182.
-
(2005)
Chromosoma
, vol.114
, pp. 173-182
-
-
Deng, H.1
Zhang, W.2
Bao, X.3
Martin, J.N.4
Girton, J.5
-
55
-
-
0034938613
-
The frequency distribution of nucleotide variation in Drosophila simulans
-
Begun DJ (2001) The frequency distribution of nucleotide variation in Drosophila simulans. Mol Biol Evol 18: 1343-1352.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1343-1352
-
-
Begun, D.J.1
-
56
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
Fay JC, Wu CI (2000) Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.I.2
-
57
-
-
28644440530
-
The signature of positive selection on standing genetic variation
-
Przeworski M, Coop G, Wall JD (2005) The signature of positive selection on standing genetic variation. Evolution Int J Org Evolution 59: 2312-2323.
-
(2005)
Evolution Int J Org Evolution
, vol.59
, pp. 2312-2323
-
-
Przeworski, M.1
Coop, G.2
Wall, J.D.3
-
58
-
-
26444579454
-
X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis
-
Singh ND, Davis JC, Petrov DA (2005) X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis. Genetics 171: 145-155.
-
(2005)
Genetics
, vol.171
, pp. 145-155
-
-
Singh, N.D.1
Davis, J.C.2
Petrov, D.A.3
-
59
-
-
25144452814
-
Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome
-
Singh ND, Davis JC, Petrov DA (2005) Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome. J Mol Evol 61: 315-324.
-
(2005)
J Mol Evol
, vol.61
, pp. 315-324
-
-
Singh, N.D.1
Davis, J.C.2
Petrov, D.A.3
-
60
-
-
33646565963
-
Accurate inference and estimation in population genomics
-
Hahn MW (2006) Accurate inference and estimation in population genomics. Mol Biol Evol 23: 911-918.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 911-918
-
-
Hahn, M.W.1
-
61
-
-
0342383237
-
Effects of linkage on rates of molecular evolution
-
Birky CW Jr., Walsh JB (1988) Effects of linkage on rates of molecular evolution. Proc Natl Acad Sci U S A 85: 6414-6418.
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 6414-6418
-
-
Birky Jr., C.W.1
Walsh, J.B.2
-
63
-
-
0033767383
-
The correlation between intron length and recombination in Drosophila. Dynamic equilibrium between mutational and selective forces
-
Comeron JM, Kreitman M (2000) The correlation between intron length and recombination in Drosophila. Dynamic equilibrium between mutational and selective forces. Genetics 156: 1175-1190.
-
(2000)
Genetics
, vol.156
, pp. 1175-1190
-
-
Comeron, J.M.1
Kreitman, M.2
-
64
-
-
0036188913
-
Interactions between natural selection, recombination and gene density in the genes of Drosophila
-
Hey J, Kliman RM (2002) Interactions between natural selection, recombination and gene density in the genes of Drosophila. Genetics 160: 595-608.
-
(2002)
Genetics
, vol.160
, pp. 595-608
-
-
Hey, J.1
Kliman, R.M.2
-
65
-
-
0024058618
-
The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence
-
Aquadro CF, Lado KM, Noon WA (1988) The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence. Genetics 119: 875-888.
-
(1988)
Genetics
, vol.119
, pp. 875-888
-
-
Aquadro, C.F.1
Lado, K.M.2
Noon, W.A.3
-
66
-
-
0028846610
-
Deleterious background selection with recombination
-
Hudson RR, Kaplan NL (1995) Deleterious background selection with recombination. Genetics 141: 1605-1617.
-
(1995)
Genetics
, vol.141
, pp. 1605-1617
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
67
-
-
33845907125
-
Fine-scale crossover rate heterogeneity in Drosophila pseudoobscura
-
Cirulli ET, Kliman RM, Noor MA (2007) Fine-scale crossover rate heterogeneity in Drosophila pseudoobscura. J Mol Evol 64: 129-135.
-
(2007)
J Mol Evol
, vol.64
, pp. 129-135
-
-
Cirulli, E.T.1
Kliman, R.M.2
Noor, M.A.3
-
68
-
-
0018930850
-
Chromosomal sites necessary for normal levels of meiotic recombination in Drosophila melanogaster. I. Evidence for and mapping of the sites
-
Hawley RS (1980) Chromosomal sites necessary for normal levels of meiotic recombination in Drosophila melanogaster. I. Evidence for and mapping of the sites. Genetics 94: 625-646.
-
(1980)
Genetics
, vol.94
, pp. 625-646
-
-
Hawley, R.S.1
-
69
-
-
0026549151
-
A superfamily of Drosophila satellite related (SR) DNA repeats restricted to the X chromosome euchromatin
-
DiBartolomeis SM, Tartof KD, Jackson FR (1992) A superfamily of Drosophila satellite related (SR) DNA repeats restricted to the X chromosome euchromatin. Nucleic Acids Res 20: 1113-1116.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 1113-1116
-
-
DiBartolomeis, S.M.1
Tartof, K.D.2
Jackson, F.R.3
-
70
-
-
10644297436
-
Coordination of replication and transcription along a Drosophila chromosome
-
MacAlpine DM, Rodriguez HK, Bell SP (2004) Coordination of replication and transcription along a Drosophila chromosome. Genes Dev 18: 3094-3105.
-
(2004)
Genes Dev
, vol.18
, pp. 3094-3105
-
-
MacAlpine, D.M.1
Rodriguez, H.K.2
Bell, S.P.3
-
71
-
-
0036842221
-
Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and replication timing
-
Schubeler D, Scalzo D, Kooperberg C, van Steensel B, Delrow J, et al. (2002) Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing. Nat Genet 32: 438-442.
-
(2002)
Nat Genet
, vol.32
, pp. 438-442
-
-
Schubeler, D.1
Scalzo, D.2
Kooperberg, C.3
van Steensel, B.4
Delrow, J.5
-
73
-
-
0041317004
-
Natural selection drives Drosophila immune system evolution
-
Schlenke TA, Begun DJ (2003) Natural selection drives Drosophila immune system evolution. Genetics 164: 1471-1480.
-
(2003)
Genetics
, vol.164
, pp. 1471-1480
-
-
Schlenke, T.A.1
Begun, D.J.2
-
74
-
-
18844450453
-
Linkage disequilibrium and recent selection at three immunity receptor loci in Drosophila simulans
-
Schlenke TA, Begun DJ (2005) Linkage disequilibrium and recent selection at three immunity receptor loci in Drosophila simulans. Genetics 169: 2013-2022.
-
(2005)
Genetics
, vol.169
, pp. 2013-2022
-
-
Schlenke, T.A.1
Begun, D.J.2
-
75
-
-
0001714012
-
Multilocus structure of natural populations of Hordeum spontaneum
-
Brown AH, Feldman MW, Nevo E (1980) Multilocus structure of natural populations of Hordeum spontaneum. Genetics 96: 523-536.
-
(1980)
Genetics
, vol.96
, pp. 523-536
-
-
Brown, A.H.1
Feldman, M.W.2
Nevo, E.3
-
76
-
-
0023612034
-
Estimating the recombination parameter of a finite population model without selection
-
Hudson RR (1987) Estimating the recombination parameter of a finite population model without selection. Genet Res 50: 245-250.
-
(1987)
Genet Res
, vol.50
, pp. 245-250
-
-
Hudson, R.R.1
-
77
-
-
3843073210
-
Linkage disequilibrium as a signature of selective sweeps
-
Kim Y, Nielsen R (2004) Linkage disequilibrium as a signature of selective sweeps. Genetics 167: 1513-1524.
-
(2004)
Genetics
, vol.167
, pp. 1513-1524
-
-
Kim, Y.1
Nielsen, R.2
-
78
-
-
33646180401
-
The hitchhiking effect on linkage disequilibrium between linked neutral loci
-
Stephan W, Song YS, Langley CH (2006) The hitchhiking effect on linkage disequilibrium between linked neutral loci. Genetics 172: 2647-2663.
-
(2006)
Genetics
, vol.172
, pp. 2647-2663
-
-
Stephan, W.1
Song, Y.S.2
Langley, C.H.3
-
79
-
-
33745390322
-
Contrasted polymorphism patterns in a large sample of populations from the evolutionary genetics model Drosophila simulans
-
Baudry E, Derome N, Huet M, Veuille M (2006) Contrasted polymorphism patterns in a large sample of populations from the evolutionary genetics model Drosophila simulans. Genetics 173: 759-767.
-
(2006)
Genetics
, vol.173
, pp. 759-767
-
-
Baudry, E.1
Derome, N.2
Huet, M.3
Veuille, M.4
-
80
-
-
0029022711
-
Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans
-
Begun DJ, Aquadro CF (1995) Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans. Genetics 140: 1019-1032.
-
(1995)
Genetics
, vol.140
, pp. 1019-1032
-
-
Begun, D.J.1
Aquadro, C.F.2
-
81
-
-
0032848722
-
Population structure among African and derived populations of Drosophila simulans: Evidence for ancient subdivision and recent admixture
-
Hamblin MT, Veuille M (1999) Population structure among African and derived populations of Drosophila simulans: evidence for ancient subdivision and recent admixture. Genetics 153: 305-317.
-
(1999)
Genetics
, vol.153
, pp. 305-317
-
-
Hamblin, M.T.1
Veuille, M.2
-
82
-
-
0023283959
-
Contrasting patterns of geographic variation in the cosmopolitan sibling species Drosophila melanogaster and Drosophila simulans
-
Singh RS, Choudhary M, David JR (1987) Contrasting patterns of geographic variation in the cosmopolitan sibling species Drosophila melanogaster and Drosophila simulans. Biochem Genet 25: 27-40.
-
(1987)
Biochem Genet
, vol.25
, pp. 27-40
-
-
Singh, R.S.1
Choudhary, M.2
David, J.R.3
-
83
-
-
0346991744
-
A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster
-
Kauer MO, Dieringer D, Schlotterer C (2003) A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster. Genetics 165: 1137-1148.
-
(2003)
Genetics
, vol.165
, pp. 1137-1148
-
-
Kauer, M.O.1
Dieringer, D.2
Schlotterer, C.3
-
84
-
-
1242274636
-
Strong selective sweep associated with a transposon insertion in Drosophila simulans
-
Schlenke TA, Begun DJ (2004) Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc Natl Acad Sci U S A 101: 1626-1631.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 1626-1631
-
-
Schlenke, T.A.1
Begun, D.J.2
-
85
-
-
3042692452
-
Patterns of microsatellite variability among X chromosomes and autosomes indicate a high frequency of beneficial mutations in non-African D. simulans
-
Schofl G, Schlotterer C (2004) Patterns of microsatellite variability among X chromosomes and autosomes indicate a high frequency of beneficial mutations in non-African D. simulans. Mol Biol Evol 21: 1384-1390.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1384-1390
-
-
Schofl, G.1
Schlotterer, C.2
-
86
-
-
33750200640
-
Microsatellite variation and differentiation in African and non-African populations of Drosophila simulans
-
Schofl G, Schlotterer C (2006) Microsatellite variation and differentiation in African and non-African populations of Drosophila simulans. Mol Ecol 15: 3895-3905.
-
(2006)
Mol Ecol
, vol.15
, pp. 3895-3905
-
-
Schofl, G.1
Schlotterer, C.2
-
87
-
-
33750483929
-
Natural variation in Drosophila melanogaster diapause due to the insulin-regulated PI3-kinase
-
Williams KD, Busto M, Suster ML, So AK, Ben-Shahar Y, et al. (2006) Natural variation in Drosophila melanogaster diapause due to the insulin-regulated PI3-kinase. Proc Natl Acad Sci U S A 103: 15911-15915.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 15911-15915
-
-
Williams, K.D.1
Busto, M.2
Suster, M.L.3
So, A.K.4
Ben-Shahar, Y.5
-
89
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
Akashi H (1995) Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
90
-
-
0032953881
-
Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
-
Akashi H (1999) Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination. Genetics 151: 221-238.
-
(1999)
Genetics
, vol.151
, pp. 221-238
-
-
Akashi, H.1
-
91
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R (2005) Molecular signatures of natural selection. Annu Rev Genet 39: 197-218.
-
(2005)
Annu Rev Genet
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
92
-
-
0345772211
-
PKD2 cation channel is required for directional sperm movement and male fertility
-
Gao Z, Ruden DM, Lu X (2003) PKD2 cation channel is required for directional sperm movement and male fertility. Curr Biol 13: 2175-2178.
-
(2003)
Curr Biol
, vol.13
, pp. 2175-2178
-
-
Gao, Z.1
Ruden, D.M.2
Lu, X.3
-
93
-
-
0346403328
-
A flagellar polycystin-2 homolog required for male fertility in Drosophila
-
Watnick TJ, Jin Y, Matunis E, Kernan MJ, Montell C (2003) A flagellar polycystin-2 homolog required for male fertility in Drosophila. Curr Biol 13: 2179-2184.
-
(2003)
Curr Biol
, vol.13
, pp. 2179-2184
-
-
Watnick, T.J.1
Jin, Y.2
Matunis, E.3
Kernan, M.J.4
Montell, C.5
-
94
-
-
19344368275
-
Multiple apoptotic caspase cascades are required in nonapoptotic roles for Drosophila spermatid individualization
-
Huh JR, Vernooy SY, Yu H, Yan N, Shi Y, et al. (2004) Multiple apoptotic caspase cascades are required in nonapoptotic roles for Drosophila spermatid individualization. PLoS Biol 2: E15.
-
(2004)
PLoS Biol
, vol.2
-
-
Huh, J.R.1
Vernooy, S.Y.2
Yu, H.3
Yan, N.4
Shi, Y.5
-
95
-
-
0034021646
-
A new family of adenylyl cyclase genes in the male germline of Drosophila melanogaster
-
Cann MJ, Chung E, Levin LR (2000) A new family of adenylyl cyclase genes in the male germline of Drosophila melanogaster. Dev Genes Evol 210: 200-206.
-
(2000)
Dev Genes Evol
, vol.210
, pp. 200-206
-
-
Cann, M.J.1
Chung, E.2
Levin, L.R.3
-
96
-
-
13144254216
-
PVF1/PVR signaling and apoptosis promotes the rotation and dorsal closure of the Drosophila male terminalia
-
Macias A, Romero NM, Martin F, Suarez L, Rosa AL, et al. (2004) PVF1/PVR signaling and apoptosis promotes the rotation and dorsal closure of the Drosophila male terminalia. Int J Dev Biol 48: 1087-1094.
-
(2004)
Int J Dev Biol
, vol.48
, pp. 1087-1094
-
-
Macias, A.1
Romero, N.M.2
Martin, F.3
Suarez, L.4
Rosa, A.L.5
-
97
-
-
0000644123
-
Genetic basis of differences in genital morphology among the three sibling species of Drosophila
-
Coyne JA (1983) Genetic basis of differences in genital morphology among the three sibling species of Drosophila. Evolution Int J Org Evolution 37: 1101-1118.
-
(1983)
Evolution Int J Org Evolution
, vol.37
, pp. 1101-1118
-
-
Coyne, J.A.1
-
98
-
-
0035052650
-
Identification of chromosome inheritance modifiers in Drosophila melanogaster
-
Dobie KW, Kennedy CD, Velasco VM, McGrath TL, Weko J, et al. (2001) Identification of chromosome inheritance modifiers in Drosophila melanogaster. Genetics 157: 1623-1637.
-
(2001)
Genetics
, vol.157
, pp. 1623-1637
-
-
Dobie, K.W.1
Kennedy, C.D.2
Velasco, V.M.3
McGrath, T.L.4
Weko, J.5
-
99
-
-
0035103847
-
Adaptive evolution of Cid, a centromerespecific histone in Drosophila
-
Malik HS, Henikoff S (2001) Adaptive evolution of Cid, a centromerespecific histone in Drosophila. Genetics 157: 1293-1298.
-
(2001)
Genetics
, vol.157
, pp. 1293-1298
-
-
Malik, H.S.1
Henikoff, S.2
-
100
-
-
33745441569
-
Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila
-
doi:10.1371/journal.pgen.0010009
-
Vermaak D, Henikoff S, Malik HS (2005) Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. PLoS Genet 1: e9. doi:10.1371/journal.pgen.0010009.
-
(2005)
PLoS Genet
, vol.1
-
-
Vermaak, D.1
Henikoff, S.2
Malik, H.S.3
-
101
-
-
0027604734
-
The reproductive incompatibility system in Drosophila simulans: DAPI-staining analysis of the Wolbachia symbionts in sperm cysts
-
Bressac C, Rousset F (1993) The reproductive incompatibility system in Drosophila simulans: DAPI-staining analysis of the Wolbachia symbionts in sperm cysts. J Invertebr Pathol 61: 226-230.
-
(1993)
J Invertebr Pathol
, vol.61
, pp. 226-230
-
-
Bressac, C.1
Rousset, F.2
-
102
-
-
0032696707
-
Small sperm, uniparental inheritance and selfish cytoplasmic elements: A comparison of two models
-
Randerson JP, Hurst LD (1999) Small sperm, uniparental inheritance and selfish cytoplasmic elements: a comparison of two models. J Evol Biol 12: 1110-1124.
-
(1999)
J Evol Biol
, vol.12
, pp. 1110-1124
-
-
Randerson, J.P.1
Hurst, L.D.2
-
103
-
-
0034060081
-
Offsetting effects of Wolbachia infection and heat shock on sperm production in Drosophila simulans: Analyses of fecundity, fertility and accessory gland proteins
-
Snook RR, Cleland SY, Wolfner MF, Karr TL (2000) Offsetting effects of Wolbachia infection and heat shock on sperm production in Drosophila simulans: analyses of fecundity, fertility and accessory gland proteins. Genetics 155: 167-178.
-
(2000)
Genetics
, vol.155
, pp. 167-178
-
-
Snook, R.R.1
Cleland, S.Y.2
Wolfner, M.F.3
Karr, T.L.4
-
104
-
-
33750452661
-
Widespread adaptive evolution of Drosophila genes with sex-biased expression
-
Proschel M, Zhang Z, Parsch J (2006) Widespread adaptive evolution of Drosophila genes with sex-biased expression. Genetics 174: 893-900.
-
(2006)
Genetics
, vol.174
, pp. 893-900
-
-
Proschel, M.1
Zhang, Z.2
Parsch, J.3
-
105
-
-
0029668422
-
Sexually antagonistic male adaptation triggered by experimental arrest of female evolution
-
Rice WR (1996) Sexually antagonistic male adaptation triggered by experimental arrest of female evolution. Nature 381: 232-234.
-
(1996)
Nature
, vol.381
, pp. 232-234
-
-
Rice, W.R.1
-
106
-
-
33845884309
-
Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96
-
Presgraves DC, Stephan W (2007) Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96. Mol Biol Evol 24: 306-314.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 306-314
-
-
Presgraves, D.C.1
Stephan, W.2
-
107
-
-
20144379646
-
Protein interaction mapping: A Drosophila case study
-
Formstecher E, Aresta S, Collura V, Hamburger A, Meil A, et al. (2005) Protein interaction mapping: a Drosophila case study. Genome Res 15: 376-384.
-
(2005)
Genome Res
, vol.15
, pp. 376-384
-
-
Formstecher, E.1
Aresta, S.2
Collura, V.3
Hamburger, A.4
Meil, A.5
-
108
-
-
0030774803
-
The sex-ratio trait in Drosophila simulans: Genetic analysis of distortion and suppression
-
Cazemajor M, Landre C, Montchamp-Moreau C (1997) The sex-ratio trait in Drosophila simulans: genetic analysis of distortion and suppression. Genetics 147: 635-642.
-
(1997)
Genetics
, vol.147
, pp. 635-642
-
-
Cazemajor, M.1
Landre, C.2
Montchamp-Moreau, C.3
-
109
-
-
0035677532
-
Sex chromosome meiotic drive
-
Jaenike J (2001) Sex chromosome meiotic drive. Ann Rev Ecol System 32: 25-49.
-
(2001)
Ann Rev Ecol System
, vol.32
, pp. 25-49
-
-
Jaenike, J.1
-
110
-
-
0037044727
-
Sperm-female coevolution in Drosophila
-
Miller GT, Pitnick S (2002) Sperm-female coevolution in Drosophila. Science 298: 1230-1233.
-
(2002)
Science
, vol.298
, pp. 1230-1233
-
-
Miller, G.T.1
Pitnick, S.2
-
112
-
-
33344471142
-
Regulation of gene expression by alternative untranslated regions
-
Hughes TA (2006) Regulation of gene expression by alternative untranslated regions. Trends Genet 22: 119-122.
-
(2006)
Trends Genet
, vol.22
, pp. 119-122
-
-
Hughes, T.A.1
-
113
-
-
0028220048
-
Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
-
Akashi H (1994) Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics 136: 927-935.
-
(1994)
Genetics
, vol.136
, pp. 927-935
-
-
Akashi, H.1
-
114
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
Bulmer M (1991) The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
115
-
-
0029091329
-
A test for adaptive change in DNA sequences controlling transcription
-
Jenkins DL, Ortori CA, Brookfield JF (1995) A test for adaptive change in DNA sequences controlling transcription. Proc Biol Sci 261: 203-207.
-
(1995)
Proc Biol Sci
, vol.261
, pp. 203-207
-
-
Jenkins, D.L.1
Ortori, C.A.2
Brookfield, J.F.3
-
116
-
-
1542347028
-
-
Kohn MH, Fang S, Wu CI (2004) Inference of positive and negative selection on the 5′ regulatory regions of Drosophila genes. Mol Biol Evol 21: 374-383.
-
Kohn MH, Fang S, Wu CI (2004) Inference of positive and negative selection on the 5′ regulatory regions of Drosophila genes. Mol Biol Evol 21: 374-383.
-
-
-
-
117
-
-
3042544623
-
The genomic rate of adaptive amino acid substitution in Drosophila
-
Bierne N, Eyre-Walker A (2004) The genomic rate of adaptive amino acid substitution in Drosophila. Mol Biol Evol 21: 1350-1360.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1350-1360
-
-
Bierne, N.1
Eyre-Walker, A.2
-
118
-
-
0036961517
-
Genomic effects of nucleotide substitutions in Drosophila simulans
-
Kern AD, Jones CD, Begun DJ (2002) Genomic effects of nucleotide substitutions in Drosophila simulans. Genetics 162: 1753-1761.
-
(2002)
Genetics
, vol.162
, pp. 1753-1761
-
-
Kern, A.D.1
Jones, C.D.2
Begun, D.J.3
-
119
-
-
0346120050
-
Analysis of a shift in codon usage in Drosophila
-
Powell JR, Sezzi E, Moriyama EN, Gleason JM, Caccone A (2003) Analysis of a shift in codon usage in Drosophila. J Mol Evol 57 Suppl 1: S214-225.
-
(2003)
J Mol Evol
, vol.57
, Issue.SUPPL. 1
-
-
Powell, J.R.1
Sezzi, E.2
Moriyama, E.N.3
Gleason, J.M.4
Caccone, A.5
-
120
-
-
33644780844
-
GC-biased segregation of noncoding polymorphisms in Drosophila
-
Galtier N, Bazin E, Bierne N (2006) GC-biased segregation of noncoding polymorphisms in Drosophila. Genetics 172: 221-228.
-
(2006)
Genetics
, vol.172
, pp. 221-228
-
-
Galtier, N.1
Bazin, E.2
Bierne, N.3
-
121
-
-
0019426751
-
Cloning of DNA sequences from the white locus of D. melanogaster by a novel and general method
-
Bingham PM, Levis R, Rubin GM (1981) Cloning of DNA sequences from the white locus of D. melanogaster by a novel and general method. Cell 25: 693-704.
-
(1981)
Cell
, vol.25
, pp. 693-704
-
-
Bingham, P.M.1
Levis, R.2
Rubin, G.M.3
-
123
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent WJ (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
124
-
-
0017071682
-
Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences
-
Lemeunier F, Ashburner MA (1976) Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences. Proc R Soc Lond B Biol Sci 193: 275-294.
-
(1976)
Proc R Soc Lond B Biol Sci
, vol.193
, pp. 275-294
-
-
Lemeunier, F.1
Ashburner, M.A.2
-
125
-
-
0030833564
-
ReAligner: A program for refining DNA sequence multi-alignments
-
Anson EL, Myers EW (1997) ReAligner: a program for refining DNA sequence multi-alignments. J Comput Biol 4: 369-383.
-
(1997)
J Comput Biol
, vol.4
, pp. 369-383
-
-
Anson, E.L.1
Myers, E.W.2
-
126
-
-
1842667852
-
MAVID: Constrained ancestral alignment of multiple sequences
-
Bray N, Pachter L (2004) MAVID: constrained ancestral alignment of multiple sequences. Genome Res 14: 693-699.
-
(2004)
Genome Res
, vol.14
, pp. 693-699
-
-
Bray, N.1
Pachter, L.2
-
128
-
-
0003752712
-
-
Sunderland Massachusetts, Sinauer Associates
-
Weir BS (1990) Genetic data analysis. Sunderland (Massachusetts): Sinauer Associates.
-
(1990)
Genetic data analysis
-
-
Weir, B.S.1
-
129
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426.
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
130
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN, editor, New York: Academic Press
-
Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN, editor. Mammalian protein metabolism. New York: Academic Press.
-
(1969)
Mammalian protein metabolism
-
-
Jukes, T.H.1
Cantor, C.R.2
-
131
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-556.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
132
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res 12: 1611-1618.
-
(2002)
Genome Res
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
-
133
-
-
0022376704
-
Dating the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160-174.
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
134
-
-
0030000951
-
Excess amino acid polymorphism in mitochondrial DNA: Contrasts among genes from Drosophila, mice, and humans
-
Rand DM, Kann LM (1996) Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans. Mol Biol Evol 13: 735-748.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 735-748
-
-
Rand, D.M.1
Kann, L.M.2
-
136
-
-
10844274729
-
Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection
-
Swanson WJ, Wong A, Wolfner MF, Aquadro CF (2004) Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection. Genetics 168: 1457-1465.
-
(2004)
Genetics
, vol.168
, pp. 1457-1465
-
-
Swanson, W.J.1
Wong, A.2
Wolfner, M.F.3
Aquadro, C.F.4
-
137
-
-
33745879785
-
Mating-responsive genes in reproductive tissues of female Drosophila melanogaster
-
Mack PD, Kapelnikov A, Heifetz Y, Bender M (2006) Mating-responsive genes in reproductive tissues of female Drosophila melanogaster. Proc Natl Acad Sci U S A 103: 10358-10363.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 10358-10363
-
-
Mack, P.D.1
Kapelnikov, A.2
Heifetz, Y.3
Bender, M.4
-
138
-
-
4844222675
-
A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
-
Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, et al. (2004) A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults. Genome Biol 5: R40.
-
(2004)
Genome Biol
, vol.5
-
-
Parisi, M.1
Nuttall, R.2
Edwards, P.3
Minor, J.4
Naiman, D.5
-
139
-
-
0037183901
-
Gene expression during the life cycle of Drosophila melanogaster
-
Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, et al. (2002) Gene expression during the life cycle of Drosophila melanogaster. Science 297: 2270-2275.
-
(2002)
Science
, vol.297
, pp. 2270-2275
-
-
Arbeitman, M.N.1
Furlong, E.E.2
Imam, F.3
Johnson, E.4
Null, B.H.5
-
140
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, et al. (2003) A protein interaction map of Drosophila melanogaster. Science 302: 1727-1736.
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
|