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Volumn 22, Issue 1, 2012, Pages 64-75

Developmental control of gene copy number by repression of replication initiation and fork progression

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; ORIGIN RECOGNITION COMPLEX; POLYETHYLENE; SUUR PROTEIN; UNCLASSIFIED DRUG;

EID: 84855336201     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.126003.111     Document Type: Article
Times cited : (75)

References (51)
  • 1
    • 3142768347 scopus 로고    scopus 로고
    • Chromatin regulates origin activity in Drosophila follicle cells
    • DOI 10.1038/nature02694
    • Aggarwal BD, Calvi BR. 2004. Chromatin regulates origin activity in Drosophila follicle cells. Nature 430: 372-376. (Pubitemid 38937747)
    • (2004) Nature , vol.430 , Issue.6997 , pp. 372-376
    • Aggarwal, B.D.1    Calvi, B.R.2
  • 2
    • 0033569403 scopus 로고    scopus 로고
    • Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element
    • DOI 10.1101/gad.13.20.2639
    • Austin RJ, Orr-Weaver TL, Bell SP. 1999. Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element. Genes Dev 13: 2639-2649. (Pubitemid 29508551)
    • (1999) Genes and Development , vol.13 , Issue.20 , pp. 2639-2649
    • Austin, R.J.1    Orr-Weaver, T.L.2    Bell, S.P.3
  • 10
    • 0347621645 scopus 로고    scopus 로고
    • Gene amplification as a developmental strategy: Isolation of two developmental amplicons in Drosophila
    • DOI 10.1016/S1534-5807(03)00398-8, PII S1534580703003988
    • Claycomb JM, Benasutti M, Bosco G, Fenger DD, Orr-Weaver TL. 2004. Gene amplification as a developmental strategy: Isolation of two developmental amplicons in Drosophila. Dev Cell 6: 145-155. (Pubitemid 38089212)
    • (2004) Developmental Cell , vol.6 , Issue.1 , pp. 145-155
    • Claycomb, J.M.1    Benasutti, M.2    Bosco, G.3    Fenger, D.D.4    Orr-Weaver, T.L.5
  • 11
    • 52649144848 scopus 로고    scopus 로고
    • The DNA replication checkpoint directly regulates MBF-dependent G1/S transcription
    • Dutta C, Patel PK, Rosebrock A, Oliva A, Leatherwood J, Rhind N. 2008. The DNA replication checkpoint directly regulates MBF-dependent G1/S transcription. Mol Cell Biol 28: 5977-5985.
    • (2008) Mol Cell Biol , vol.28 , pp. 5977-5985
    • Dutta, C.1    Patel, P.K.2    Rosebrock, A.3    Oliva, A.4    Leatherwood, J.5    Rhind, N.6
  • 13
    • 0035805201 scopus 로고    scopus 로고
    • Endoreplication cell cycles: More for less
    • DOI 10.1016/S0092-8674(01)00334-8
    • Edgar BA, Orr-Weaver TL. 2001. Endoreplication cell cycles: more for less. Cell 105: 297-306. (Pubitemid 32455339)
    • (2001) Cell , vol.105 , Issue.3 , pp. 297-306
    • Edgar, B.A.1    Orr-Weaver, T.L.2
  • 14
    • 0000939505 scopus 로고
    • A technique of transplantation for Drosophila
    • Ephrussi B, Beadle GW. 1936. A technique of transplantation for Drosophila. Am Nat 70: 218-225.
    • (1936) Am Nat , vol.70 , pp. 218-225
    • Ephrussi, B.1    Beadle, G.W.2
  • 17
    • 77956879643 scopus 로고    scopus 로고
    • Evaluating genome-scale approaches to eukaryotic DNA replication
    • Gilbert DM. 2010. Evaluating genome-scale approaches to eukaryotic DNA replication. Nat Rev Genet 11: 673-684.
    • (2010) Nat Rev Genet , vol.11 , pp. 673-684
    • Gilbert, D.M.1
  • 20
    • 39149090682 scopus 로고    scopus 로고
    • CGH microarrays and cancer
    • Kallioniemi A. 2008. CGH microarrays and cancer. Curr Opin Biotechnol 19: 36-40.
    • (2008) Curr Opin Biotechnol , vol.19 , pp. 36-40
    • Kallioniemi, A.1
  • 21
    • 76049105950 scopus 로고    scopus 로고
    • Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection
    • Karnani N, Taylor CM, Malhotra A, Dutta A. 2010. Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection. Mol Biol Cell 21: 393-404.
    • (2010) Mol Biol Cell , vol.21 , pp. 393-404
    • Karnani, N.1    Taylor, C.M.2    Malhotra, A.3    Dutta, A.4
  • 22
    • 57449100870 scopus 로고    scopus 로고
    • Design and analysis of ChIP-seq experiments for DNA-binding proteins
    • Kharchenko PV, Tolstorukov MY, Park PJ. 2008. Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat Biotechnol 26: 1351-1359.
    • (2008) Nat Biotechnol , vol.26 , pp. 1351-1359
    • Kharchenko, P.V.1    Tolstorukov, M.Y.2    Park, P.J.3
  • 23
    • 79959936930 scopus 로고    scopus 로고
    • Integrative analysis of gene amplification in Drosophila follicle cells: Parameters of origin activation and repression
    • Kim JC, Nordman J, Xie F, Kashevsky H, Eng T, Li S, MacAlpine DM, Orr-Weaver TL. 2011. Integrative analysis of gene amplification in Drosophila follicle cells: parameters of origin activation and repression. Genes Dev 25: 1384-1398.
    • (2011) Genes Dev , vol.25 , pp. 1384-1398
    • Kim, J.C.1    Nordman, J.2    Xie, F.3    Kashevsky, H.4    Eng, T.5    Li, S.6    MacAlpine, D.M.7    Orr-Weaver, T.L.8
  • 24
    • 70349500228 scopus 로고    scopus 로고
    • The mutation of the Suppressor of Underreplication gene does not affect the replication fork rate in the Drosophila melanogaster salivary gland polytene chromosomes
    • Kolesnikova TD, Demakov SA, Ivankin AV, Andreenkova NG, Zhimulev IF. 2009. The mutation of the Suppressor of Underreplication gene does not affect the replication fork rate in the Drosophila melanogaster salivary gland polytene chromosomes. Dokl Biochem Biophys 427: 175-178.
    • (2009) Dokl Biochem Biophys , vol.427 , pp. 175-178
    • Kolesnikova, T.D.1    Demakov, S.A.2    Ivankin, A.V.3    Andreenkova, N.G.4    Zhimulev, I.F.5
  • 25
    • 0030888234 scopus 로고    scopus 로고
    • The k43 gene, required for chorion gene amplification and diploid cell chromosome replication, encodes the Drosophila homolog of yeast origin recognition complex subunit 2
    • DOI 10.1073/pnas.94.8.3888
    • Landis G, Kelley R, Spradling AC, Tower J. 1997. The k43 gene, required for chorion gene amplification and diploid cell chromosome replication, encodes the Drosophila homolog of yeast origin recognition complex subunit 2. Proc Natl Acad Sci 94: 3888-3892. (Pubitemid 27180468)
    • (1997) Proceedings of the National Academy of Sciences of the United States of America , vol.94 , Issue.8 , pp. 3888-3892
    • Landis, G.1    Kelley, R.2    Spradling, A.C.3    Tower, J.4
  • 26
    • 33845925394 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation and microarray-based analysis of protein location
    • Lee TI, Johnstone SE, Young RA. 2006. Chromatin immunoprecipitation and microarray-based analysis of protein location. Nat Protoc 1: 729-748.
    • (2006) Nat Protoc , vol.1 , pp. 729-748
    • Lee, T.I.1    Johnstone, S.E.2    Young, R.A.3
  • 27
    • 70350629054 scopus 로고    scopus 로고
    • Endoreplication: Polyploidy with purpose
    • Lee HO, Davidson JM, Duronio RJ. 2009. Endoreplication: polyploidy with purpose. Genes Dev 23: 2461-2477.
    • (2009) Genes Dev , vol.23 , pp. 2461-2477
    • Lee, H.O.1    Davidson, J.M.2    Duronio, R.J.3
  • 28
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18: 1851-1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 29
    • 34547637896 scopus 로고    scopus 로고
    • High-throughput mapping of origins of replication in human cells
    • DOI 10.1038/sj.embor.7401026, PII 7401026
    • Lucas I, Palakodeti A, Jiang Y, Young DJ, Jiang N, Fernald AA, Le Beau MM. 2007. High-throughput mapping of origins of replication in human cells. EMBO Rep 8: 770-777. (Pubitemid 47202457)
    • (2007) EMBO Reports , vol.8 , Issue.8 , pp. 770-777
    • Lucas, I.1    Palakodeti, A.2    Jiang, Y.3    Young, D.J.4    Jiang, N.5    Fernald, A.A.6    Le, B.M.M.7
  • 30
    • 10644297436 scopus 로고    scopus 로고
    • Coordination of replication and transcription along a Drosophila chromosome
    • DOI 10.1101/gad.1246404
    • MacAlpine DM, Rodriguez HK, Bell SP. 2004. Coordination of replication and transcription along a Drosophila chromosome. Genes Dev 18: 3094-3105. (Pubitemid 39658177)
    • (2004) Genes and Development , vol.18 , Issue.24 , pp. 3094-3105
    • MacAlpine, D.M.1    Rodriguez, H.K.2    Bell, S.P.3
  • 31
    • 75649109712 scopus 로고    scopus 로고
    • Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
    • MacAlpine HK, Gordan R, Powell SK, Hartemink AJ, MacAlpine DM. 2010. Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading. Genome Res 20: 201-211.
    • (2010) Genome Res , vol.20 , pp. 201-211
    • MacAlpine, H.K.1    Gordan, R.2    Powell, S.K.3    Hartemink, A.J.4    MacAlpine, D.M.5
  • 32
    • 0036199908 scopus 로고    scopus 로고
    • The Drosophila suppressor of underreplication protein binds to late-replicating regions of polytene chromosomes
    • Makunin IV, Volkova EI, Belyaeva ES, Nabirochkina EN, Pirrotta V, Zhimulev IF. 2002. The Drosophila suppressor of underreplication protein binds to late-replicating regions of polytene chromosomes. Genetics 160: 1023-1034. (Pubitemid 34263466)
    • (2002) Genetics , vol.160 , Issue.3 , pp. 1023-1034
    • Makunin, I.V.1    Volkova, E.I.2    Belyaeva, E.S.3    Nabirochkina, E.N.4    Pirrotta, V.5    Zhimulev, I.F.6
  • 33
    • 77957168933 scopus 로고    scopus 로고
    • Eukaryotic DNA replication origins: Many choices for appropriate answers
    • Mechali M. 2010. Eukaryotic DNA replication origins: many choices for appropriate answers. Nat Rev Mol Cell Biol 11: 728-738.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 728-738
    • Mechali, M.1
  • 34
    • 79952270733 scopus 로고    scopus 로고
    • Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription
    • Mesner LD, Valsakumar V, Karnani N, Dutta A, Hamlin JL, Bekiranov S. 2011. Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription. Genome Res 21: 377-389.
    • (2011) Genome Res , vol.21 , pp. 377-389
    • Mesner, L.D.1    Valsakumar, V.2    Karnani, N.3    Dutta, A.4    Hamlin, J.L.5    Bekiranov, S.6
  • 35
    • 79551585897 scopus 로고    scopus 로고
    • Developmental control of the DNA replication and transcription programs
    • Nordman J, Li S, Eng T, Macalpine D, Orr-Weaver TL. 2011. Developmental control of the DNA replication and transcription programs. Genome Res 21: 175-181.
    • (2011) Genome Res , vol.21 , pp. 175-181
    • Nordman, J.1    Li, S.2    Eng, T.3    Macalpine, D.4    Orr-Weaver, T.L.5
  • 36
    • 50449100220 scopus 로고    scopus 로고
    • The origin recognition complex is dispensable for endoreplication in Drosophila
    • Park SY, Asano M. 2008. The origin recognition complex is dispensable for endoreplication in Drosophila. Proc Natl Acad Sci 105: 12343-12348.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 12343-12348
    • Park, S.Y.1    Asano, M.2
  • 41
    • 0036842221 scopus 로고    scopus 로고
    • Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and replication timing
    • DOI 10.1038/ng1005
    • Schubeler D, Scalzo D, Kooperberg C, van Steensel B, Delrow J, Groudine M. 2002. Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing. Nat Genet 32: 438-442. (Pubitemid 35266122)
    • (2002) Nature Genetics , vol.32 , Issue.3 , pp. 438-442
    • Schubeler, D.1    Scalzo, D.2    Kooperberg, C.3    Van Steensel, B.4    Delrow, J.5    Groudine, M.6
  • 42
    • 61849177618 scopus 로고    scopus 로고
    • Chromatin state marks cell-type- And gender-specific replication of the Drosophila genome
    • Schwaiger M, Stadler MB, Bell O, Kohler H, Oakeley EJ, Schubeler D. 2009. Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome. Genes & Dev 23: 589-601.
    • (2009) Genes & Dev , vol.23 , pp. 589-601
    • Schwaiger, M.1    Stadler, M.B.2    Bell, O.3    Kohler, H.4    Oakeley, E.J.5    Schubeler, D.6
  • 43
    • 33845799903 scopus 로고    scopus 로고
    • Polycomb silencing mechanisms and the management of genomic programmes
    • DOI 10.1038/nrg1981, PII NRG1981
    • Schwartz YB, Pirrotta V. 2007. Polycomb silencing mechanisms and the management of genomic programmes. Nat Rev Genet 8: 9-22. (Pubitemid 46006046)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.1 , pp. 9-22
    • Schwartz, Y.B.1    Pirrotta, V.2
  • 44
    • 66149138883 scopus 로고    scopus 로고
    • Transcription initiation activity sets replication origin efficiency in mammalian cells
    • doi: 10.1371/journal.pgen.1000446
    • Sequeira-Mendes J, Diaz-Uriarte R, Apedaile A, Huntley D, Brockdorff N, Gomez M. 2009. Transcription initiation activity sets replication origin efficiency in mammalian cells. PLoS Genet 5: e1000446. doi: 10.1371/journal. pgen.1000446.
    • (2009) PLoS Genet , vol.5
    • Sequeira-Mendes, J.1    Diaz-Uriarte, R.2    Apedaile, A.3    Huntley, D.4    Brockdorff, N.5    Gomez, M.6
  • 46
    • 0023492894 scopus 로고
    • Regulation of DNA replication during Drosophila development
    • Spradling A, Orr-Weaver T. 1987. Regulation of DNA replication during Drosophila development. Annu Rev Genet 21: 373-403.
    • (1987) Annu Rev Genet , vol.21 , pp. 373-403
    • Spradling, A.1    Orr-Weaver, T.2
  • 49
    • 66849143693 scopus 로고    scopus 로고
    • Developmentally programmed endoreduplication in animals
    • Ullah Z, Lee CY, Lilly MA, DePamphilis ML. 2009. Developmentally programmed endoreduplication in animals. Cell Cycle 8: 1501-1509.
    • (2009) Cell Cycle , vol.8 , pp. 1501-1509
    • Ullah, Z.1    Lee, C.Y.2    Lilly, M.A.3    DePamphilis, M.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.