-
2
-
-
17844393119
-
Making systems biology work in the 21st century
-
Cornish-Bowden, A. Making systems biology work in the 21st century. Genome Biol., 2005, 6(4), 317.
-
(2005)
Genome Biol.
, vol.6
, Issue.4
, pp. 317
-
-
Cornish-Bowden, A.1
-
3
-
-
84861467145
-
Integrating transcriptomic regulation into models of nutrient metabolism in agricultural animals
-
in, EAAP Pub. No. 127, G.M. Crovetto, Editor 2010, Wageningen Academic Publishers, Parma, Italy
-
McNamara, J.P., Integrating transcriptomic regulation into models of nutrient metabolism in agricultural animals., in Energy and Protein Metabolism and Nutrition, EAAP Pub. No. 127, G.M. Crovetto, Editor 2010, Wageningen Academic Publishers, Parma, Italy. p. 27-37.
-
Energy and Protein Metabolism and Nutrition
, pp. 27-37
-
-
McNamara, J.P.1
-
4
-
-
0033580813
-
Systems properties of the Haemophilus influenzae Rd metabolic genotype
-
Edwards, J.S.; Palsson, B.O. Systems properties of the Haemophilus influenzae Rd metabolic genotype. J. Biol. Chem., 1999, 274(25), 17410-17416.
-
(1999)
J. Biol. Chem.
, vol.274
, Issue.25
, pp. 17410-17416
-
-
Edwards, J.S.1
Palsson, B.O.2
-
5
-
-
73149122136
-
Applications of genome-scale metabolic reconstructions
-
Oberhardt, M.A.; Palsson, B.O.; Papin, J.A. Applications of genome-scale metabolic reconstructions. Mol. Syst. Biol., 2009, 5, 320.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 320
-
-
Oberhardt, M.A.1
Palsson, B.O.2
Papin, J.A.3
-
6
-
-
77951612556
-
BiGG: A Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
-
Schellenberger, J.; Park, J.O.; Conrad, T.M.; Palsson, B.O. BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. BMC Bioinformatics, 2010, 11, 213.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 213
-
-
Schellenberger, J.1
Park, J.O.2
Conrad, T.M.3
Palsson, B.O.4
-
7
-
-
79551662521
-
Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox v2.0
-
Schellenberger, J.; Que, R.; Fleming, R.M.; Thiele, I.; Orth, J.D.; Feist, A.M.; Zielinski, D.C.; Bordbar, A.; Lewis, N.E.; Rahmanian, S.; Kang, J.; Hyduke, D.R.; Palsson, B.O. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nat. Protoc., 2011, 6(9), 1290-1307.
-
(2011)
Nat. Protoc.
, vol.6
, Issue.9
, pp. 1290-1307
-
-
Schellenberger, J.1
Que, R.2
Fleming, R.M.3
Thiele, I.4
Orth, J.D.5
Feist, A.M.6
Zielinski, D.C.7
Bordbar, A.8
Lewis, N.E.9
Rahmanian, S.10
Kang, J.11
Hyduke, D.R.12
Palsson, B.O.13
-
8
-
-
31144435316
-
Towards multidimensional genome annotation
-
Reed, J.L.; Famili, I.; Thiele, I.; Palsson, B.O. Towards multidimensional genome annotation. Nat. Rev. Genet., 2006, 7(2), 130-141.
-
(2006)
Nat. Rev. Genet.
, vol.7
, Issue.2
, pp. 130-141
-
-
Reed, J.L.1
Famili, I.2
Thiele, I.3
Palsson, B.O.4
-
9
-
-
58549108388
-
Reconstruction of biochemical networks in microorganisms
-
Feist, A.M.; Herrgard, M.J.; Thiele, I.; Reed, J.L.; Palsson, B.O. Reconstruction of biochemical networks in microorganisms. Nat. Rev. Microbiol., 2009, 7(2), 129-143.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, Issue.2
, pp. 129-143
-
-
Feist, A.M.1
Herrgard, M.J.2
Thiele, I.3
Reed, J.L.4
Palsson, B.O.5
-
10
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
Thiele, I.; Palsson, B.O. A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc., 2010, 5(1), 93-121.
-
(2010)
Nat. Protoc.
, vol.5
, Issue.1
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.O.2
-
11
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist, A.M.; Henry, C.S.; Reed, J.L.; Krummenacker, M.; Joyce, A.R.; Karp, P.D.; Broadbelt, L.J.; Hatzimanikatis, V.; Palsson, B.O. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol., 2007, 3, 121.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 121
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, B.O.9
-
12
-
-
65649126379
-
Connecting extracellular metabolomic measurements to intracellular flux states in yeast
-
Mo, M.L.; Palsson, B.O.; Herrgard, M.J. Connecting extracellular metabolomic measurements to intracellular flux states in yeast. BMC Syst. Biol., 2009, 3, 37.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 37
-
-
Mo, M.L.1
Palsson, B.O.2
Herrgard, M.J.3
-
13
-
-
77957924740
-
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1
-
Sigurdsson, M.I.; Jamshidi, N.; Steingrimsson, E.; Thiele, I.; Palsson, B.O. A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1. BMC Syst. Biol., 2010, 4, 140.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 140
-
-
Sigurdsson, M.I.1
Jamshidi, N.2
Steingrimsson, E.3
Thiele, I.4
Palsson, B.O.5
-
14
-
-
77955534569
-
Integration of metabolic databases for the reconstruction of genome-scale metabolic networks
-
Radrich, K.; Tsuruoka, Y.; Dobson, P.; Gevorgyan, A.; Swainston, N.; Baart, G.; Schwartz, J.M. Integration of metabolic databases for the reconstruction of genome-scale metabolic networks. BMC Syst. Biol., 2010, 4, 114.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 114
-
-
Radrich, K.1
Tsuruoka, Y.2
Dobson, P.3
Gevorgyan, A.4
Swainston, N.5
Baart, G.6
Schwartz, J.M.7
-
15
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte, N.C.; Becker, S.A.; Jamshidi, N.; Thiele, I.; Mo, M.L.; Vo, T.D.; Srivas, R.; Palsson, B.O. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc. Natl. Acad. Sci. USA., 2007, 104(6), 1777-1782.
-
(2007)
Proc. Natl. Acad. Sci. USA.
, vol.104
, Issue.6
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
16
-
-
34548860112
-
The Edinburgh human metabolic network reconstruction and its functional analysis
-
Ma, H.; Sorokin, A.; Mazein, A.; Selkov, A.; Selkov, E.; Demin, O.; Goryanin, I. The Edinburgh human metabolic network reconstruction and its functional analysis. Mol. Syst. Biol., 2007, 3, 135.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 135
-
-
Ma, H.1
Sorokin, A.2
Mazein, A.3
Selkov, A.4
Selkov, E.5
Demin, O.6
Goryanin, I.7
-
17
-
-
0034868592
-
What is bioinformatics? A proposed definition and overview of the field
-
Luscombe, N.M.; Greenbaum, D.; Gerstein, M. What is bioinformatics? A proposed definition and overview of the field. Methods Inf Med, 2001, 40(4), 346-358.
-
(2001)
Methods Inf Med
, vol.40
, Issue.4
, pp. 346-358
-
-
Luscombe, N.M.1
Greenbaum, D.2
Gerstein, M.3
-
18
-
-
5044226336
-
Systems biology in drug discovery
-
Butcher, E.C.; Berg, E.L.; Kunkel, E.J. Systems biology in drug discovery. Nat. Biotechnol., 2004, 22(10), 1253-1259.
-
(2004)
Nat. Biotechnol.
, vol.22
, Issue.10
, pp. 1253-1259
-
-
Butcher, E.C.1
Berg, E.L.2
Kunkel, E.J.3
-
19
-
-
62249171240
-
ASAS centennial paper: Lactation biology for the twenty-first century
-
Loor, J.J.; Cohick, W.S. ASAS centennial paper: Lactation biology for the twenty-first century. J. Anim. Sci., 2009, 87(2), 813-824.
-
(2009)
J. Anim. Sci.
, vol.87
, Issue.2
, pp. 813-824
-
-
Loor, J.J.1
Cohick, W.S.2
-
20
-
-
38849171662
-
Gene regulatory networks in lactation: Identification of global principles using bioinformatics
-
Lemay, D.G.; Neville, M.C.; Rudolph, M.C.; Pollard, K.S.; German, J.B. Gene regulatory networks in lactation: identification of global principles using bioinformatics. BMC Syst. Biol., 2007, 1, 56.
-
(2007)
BMC Syst. Biol.
, vol.1
, pp. 56
-
-
Lemay, D.G.1
Neville, M.C.2
Rudolph, M.C.3
Pollard, K.S.4
German, J.B.5
-
21
-
-
78650344889
-
Differential expression of genes in adipose tissue of first-lactation dairy cattle
-
Sumner-Thomson, J.M.; Vierck, J.L.; McNamara, J.P. Differential expression of genes in adipose tissue of first-lactation dairy cattle. J Dairy Sci, 2011, 94(1), 361-369.
-
(2011)
J Dairy Sci
, vol.94
, Issue.1
, pp. 361-369
-
-
Sumner-Thomson, J.M.1
Vierck, J.L.2
McNamara, J.P.3
-
22
-
-
0023292680
-
Metabolism of the lactating cow. I. Animal elements of a mechanistic model
-
Baldwin, R.L.; France, J.; Gill, M. Metabolism of the lactating cow. I. Animal elements of a mechanistic model. J. Dairy. Res., 1987, 54(1), 77-105.
-
(1987)
J. Dairy. Res.
, vol.54
, Issue.1
, pp. 77-105
-
-
Baldwin, R.L.1
France, J.2
Gill, M.3
-
23
-
-
0023295218
-
Metabolism of the lactating cow. II. Digestive elements of a mechanistic model
-
Baldwin, R.L.; Thornley, J.H.; Beever, D.E. Metabolism of the lactating cow. II. Digestive elements of a mechanistic model. J. Dairy. Res., 1987, 54(1), 107-131.
-
(1987)
J. Dairy. Res.
, vol.54
, Issue.1
, pp. 107-131
-
-
Baldwin, R.L.1
Thornley, J.H.2
Beever, D.E.3
-
24
-
-
0023293710
-
Metabolism of the lactating cow. III. Properties of mechanistic models suitable for evaluation of energetic relationships and factors involved in the partition of nutrients
-
Baldwin, R.L.; France, J.; Beever, D.E.; Gill, M.; Thornley, J.H. Metabolism of the lactating cow. III. Properties of mechanistic models suitable for evaluation of energetic relationships and factors involved in the partition of nutrients. J. Dairy. Res., 1987, 54(1), 133-145.
-
(1987)
J. Dairy. Res.
, vol.54
, Issue.1
, pp. 133-145
-
-
Baldwin, R.L.1
France, J.2
Beever, D.E.3
Gill, M.4
Thornley, J.H.5
-
27
-
-
77951621301
-
The genome sequence of taurine cattle: A window to ruminant biology and evolution
-
Elsik, C.G.; Tellam, R.L.; Worley, K.C.; Gibbs, R.A.; Muzny, D.M.; Weinstock, G.M.; Adelson, D.L.; Eichler, E.E.; Elnitski, L.; Guigo, R.; Hamernik, D.L.; Kappes, S.M.; Lewin, H.A.; Lynn, D.J.; Nicholas, F.W.; Reymond, A.; Rijnkels, M.; Skow, L.C.; Zdobnov, E.M.; Schook, L.; Womack, J.; Alioto, T.; Antonarakis, S.E.; Astashyn, A.; Chapple, C.E.; Chen, H.C.; Chrast, J.; Camara, F.; Ermolaeva, O.; Henrichsen, C.N.; Hlavina, W.; Kapustin, Y.; Kiryutin, B.; Kitts, P.; Kokocinski, F.; Landrum, M.; Maglott, D.; Pruitt, K.; Sapojnikov, V.; Searle, S.M.; Solovyev, V.; Souvorov, A.; Ucla, C.; Wyss, C.; Anzola, J.M.; Gerlach, D.; Elhaik, E.; Graur, D.; Reese, J.T.; Edgar, R.C.; McEwan, J.C.; Payne, G.M.; Raison, J.M.; Junier, T.; Kriventseva, E.V.; Eyras, E.; Plass, M.; Donthu, R.; Larkin, D.M.; Reecy, J.; Yang, M.Q.; Chen, L.; Cheng, Z.; Chitko-McKown, C.G.; Liu, G.E.; Matukumalli, L.K.; Song, J.; Zhu, B.; Bradley, D.G.; Brinkman, F.S.; Lau, L.P.; Whiteside, M.D.; Walker, A.; Wheeler, T.T.; Casey, T.; German, J.B.; Lemay, D.G.; Maqbool, N.J.; Molenaar, A.J.; Seo, S.; Stothard, P.; Baldwin, C.L.; Baxter, R.; Brinkmeyer-Langford, C.L.; Brown, W.C.; Childers, C.P.; Connelley, T.; Ellis, S.A.; Fritz, K.; Glass, E.J.; Herzig, C.T.; Iivanainen, A.; Lahmers, K.K.; Bennett, A.K.; Dickens, C.M.; Gilbert, J.G.; Hagen, D.E.; Salih, H.; Aerts, J.; Caetano, A.R.; Dalrymple, B.; Garcia, J.F.; Gill, C.A.; Hiendleder, S.G.; Memili, E.; Spurlock, D.; Williams, J.L.; Alexander, L.; Brownstein, M.J.; Guan, L.; Holt, R.A.; Jones, S.J.; Marra, M.A.; Moore, R.; Moore, S.S.; Roberts, A.; Taniguchi, M.; Waterman, R.C.; Chacko, J.; Chandrabose, M.M.; Cree, A.; Dao, M.D.; Dinh, H.H.; Gabisi, R.A.; Hines, S.; Hume, J.; Jhangiani, S.N.; Joshi, V.; Kovar, C.L.; Lewis, L.R.; Liu, Y.S.; Lopez, J.; Morgan, M.B.; Nguyen, N.B.; Okwuonu, G.O.; Ruiz, S.J.; Santibanez, J.; Wright, R.A.; Buhay, C.; Ding, Y.; Dugan-Rocha, S.; Herdandez, J.; Holder, M.; Sabo, A.; Egan, A.; Goodell, J.; Wilczek-Boney, K.; Fowler, G.R.; Hitchens, M.E.; Lozado, R.J.; Moen, C.; Steffen, D.; Warren, J.T.; Zhang, J.; Chiu, R.; Schein, J.E.; Durbin, K.J.; Havlak, P.; Jiang, H.; Liu, Y.; Qin, X.; Ren, Y.; Shen, Y.; Song, H.; Bell, S.N.; Davis, C.; Johnson, A.J.; Lee, S.; Nazareth, L.V.; Patel, B.M.; Pu, L.L.; Vattathil, S.; Williams, R.L., Jr.; Curry, S.; Hamilton, C.; Sodergren, E.; Wheeler, D.A.; Barris, W.; Bennett, G.L.; Eggen, A.; Green, R.D.; Harhay, G.P.; Hobbs, M.; Jann, O.; Keele, J.W.; Kent, M.P.; Lien, S.; McKay, S.D.; McWilliam, S.; Ratnakumar, A.; Schnabel, R.D.; Smith, T.; Snelling, W.M.; Sonstegard, T.S.; Stone, R.T.; Sugimoto, Y.; Takasuga, A.; Taylor, J.F.; Van Tassell, C.P.; Macneil, M.D.; Abatepaulo, A.R.; Abbey, C.A.; Ahola, V.; Almeida, I.G.; Amadio, A.F.; Anatriello, E.; Bahadue, S.M.; Biase, F.H.; Boldt, C.R.; Carroll, J.A.; Carvalho, W.A.; Cervelatti, E.P.; Chacko, E.; Chapin, J.E.; Cheng, Y.; Choi, J.; Colley, A.J.; de Campos, T.A.; De Donato, M.; Santos, I.K.; de Oliveira, C.J.; Deobald, H.; Devinoy, E.; Donohue, K.E.; Dovc, P.; Eberlein, A.; Fitzsimmons, C.J.; Franzin, A.M.; Garcia, G.R.; Genini, S.; Gladney, C.J.; Grant, J.R.; Greaser, M.L.; Green, J.A.; Hadsell, D.L.; Hakimov, H.A.; Halgren, R.; Harrow, J.L.; Hart, E.A.; Hastings, N.; Hernandez, M.; Hu, Z.L.; Ingham, A.; Iso-Touru, T.; Jamis, C.; Jensen, K.; Kapetis, D.; Kerr, T.; Khalil, S.S.; Khatib, H.; Kolbehdari, D.; Kumar, C.G.; Kumar, D.; Leach, R.; Lee, J.C.; Li, C.; Logan, K.M.; Malinverni, R.; Marques, E.; Martin, W.F.; Martins, N.F.; Maruyama, S.R.; Mazza, R.; McLean, K.L.; Medrano, J.F.; Moreno, B.T.; More, D.D.; Muntean, C.T.; Nandakumar, H.P.; Nogueira, M.F.; Olsaker, I.; Pant, S.D.; Panzitta, F.; Pastor, R.C.; Poli, M.A.; Poslusny, N.; Rachagani, S.; Ranganathan, S.; Razpet, A.; Riggs, P.K.; Rincon, G.; Rodriguez-Osorio, N.; Rodriguez-Zas, S.L.; Romero, N.E.; Rosenwald, A.; Sando, L.; Schmutz, S.M.; Shen, L.; Sherman, L.; Southey, B.R.; Lutzow, Y.S.; Sweedler, J.V.; Tammen, I.; Telugu, B.P.; Urbanski, J.M.; Utsunomiya, Y.T.; Verschoor, C.P.; Waardenberg, A.J.; Wang, Z.; Ward, R.; Weikard, R.; Welsh, T.H., Jr.; White, S.N.; Wilming, L.G.; Wunderlich, K.R.; Yang, J.; Zhao, F.Q. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science, 2009, 324(5926), 522-528.
-
(2009)
Science
, vol.324
, Issue.5926
, pp. 522-528
-
-
Elsik, C.G.1
Tellam, R.L.2
Worley, K.C.3
Gibbs, R.A.4
Muzny, D.M.5
Weinstock, G.M.6
Adelson, D.L.7
Eichler, E.E.8
Elnitski, L.9
Guigo, R.10
Hamernik, D.L.11
Kappes, S.M.12
Lewin, H.A.13
Lynn, D.J.14
Nicholas, F.W.15
Reymond, A.16
Rijnkels, M.17
Skow, L.C.18
Zdobnov, E.M.19
Schook, L.20
Womack, J.21
Alioto, T.22
Antonarakis, S.E.23
Astashyn, A.24
Chapple, C.E.25
Chen, H.C.26
Chrast, J.27
Camara, F.28
Ermolaeva, O.29
Henrichsen, C.N.30
Hlavina, W.31
Kapustin, Y.32
Kiryutin, B.33
Kitts, P.34
Kokocinski, F.35
Landrum, M.36
Maglott, D.37
Pruitt, K.38
Sapojnikov, V.39
Searle, S.M.40
Solovyev, V.41
Souvorov, A.42
Ucla, C.43
Wyss, C.44
Anzola, J.M.45
Gerlach, D.46
Elhaik, E.47
Graur, D.48
Reese, J.T.49
Edgar, R.C.50
McEwan, J.C.51
Payne, G.M.52
Raison, J.M.53
Junier, T.54
Kriventseva, E.V.55
Eyras, E.56
Plass, M.57
Donthu, R.58
Larkin, D.M.59
Reecy, J.60
Yang, M.Q.61
Chen, L.62
Cheng, Z.63
Chitko-McKown, C.G.64
Liu, G.E.65
Matukumalli, L.K.66
Song, J.67
Zhu, B.68
Bradley, D.G.69
Brinkman, F.S.70
Lau, L.P.71
Whiteside, M.D.72
Walker, A.73
Wheeler, T.T.74
Casey, T.75
German, J.B.76
Lemay, D.G.77
Maqbool, N.J.78
Molenaar, A.J.79
Seo, S.80
Stothard, P.81
Baldwin, C.L.82
Baxter, R.83
Brinkmeyer-Langford, C.L.84
Brown, W.C.85
Childers, C.P.86
Connelley, T.87
Ellis, S.A.88
Fritz, K.89
Glass, E.J.90
Herzig, C.T.91
Iivanainen, A.92
Lahmers, K.K.93
Bennett, A.K.94
Dickens, C.M.95
Gilbert, J.G.96
Hagen, D.E.97
Salih, H.98
more..
-
28
-
-
65349131424
-
Reconstruction of metabolic pathways for the cattle genome
-
Seo, S.; Lewin, H.A. Reconstruction of metabolic pathways for the cattle genome. BMC Syst. Biol., 2009, 3, 33.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 33
-
-
Seo, S.1
Lewin, H.A.2
-
29
-
-
43349102494
-
Using the MetaCyc pathway database and the BioCyc database collection
-
Chapter 1, Unit1 17
-
Caspi, R.; Karp, P.D. Using the MetaCyc pathway database and the BioCyc database collection. Curr, Protoc. Bioinformatics, 2007, Chapter 1, Unit1 17.
-
(2007)
Curr, Protoc. Bioinformatics
-
-
Caspi, R.1
Karp, P.D.2
-
30
-
-
38549117301
-
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
Caspi, R.; Foerster, H.; Fulcher, C.A.; Kaipa, P.; Krummenacker, M.; Latendresse, M.; Paley, S.; Rhee, S.Y.; Shearer, A.G.; Tissier, C.; Walk, T.C.; Zhang, P.; Karp, P.D. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic, Acids, Res., 2008, 36(Database issue), D623-631.
-
(2008)
Nucleic, Acids, Res.
, vol.36
, Issue.Database issue
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Kaipa, P.4
Krummenacker, M.5
Latendresse, M.6
Paley, S.7
Rhee, S.Y.8
Shearer, A.G.9
Tissier, C.10
Walk, T.C.11
Zhang, P.12
Karp, P.D.13
-
31
-
-
0346494819
-
MetaCyc: A multiorganism database of metabolic pathways and enzymes
-
Krieger, C.J.; Zhang, P.; Mueller, L.A.; Wang, A.; Paley, S.; Arnaud, M.; Pick, J.; Rhee, S.Y.; Karp, P.D. MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids. Res., 2004, 32(Database issue), D438-442.
-
(2004)
Nucleic Acids. Res.
, vol.32
, Issue.Database issue
-
-
Krieger, C.J.1
Zhang, P.2
Mueller, L.A.3
Wang, A.4
Paley, S.5
Arnaud, M.6
Pick, J.7
Rhee, S.Y.8
Karp, P.D.9
-
32
-
-
33746489910
-
Bringing metabolomics data into the forefront of systems biology
-
2006 0035
-
Van Dien, S.; Schilling, C.H. Bringing metabolomics data into the forefront of systems biology. Mol. Syst. Biol., 2006, 2, 2006 0035.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Van Dien, S.1
Schilling, C.H.2
-
33
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
Price, N.D.; Reed, J.L.; Palsson, B.O. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol., 2004, 2(11), 886-897.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, Issue.11
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
34
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
-
Schilling, C.H.; Letscher, D.; Palsson, B.O. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theor. Biol., 2000, 203(3), 229-248.
-
(2000)
J. Theor. Biol.
, vol.203
, Issue.3
, pp. 229-248
-
-
Schilling, C.H.1
Letscher, D.2
Palsson, B.O.3
-
35
-
-
0036840340
-
Extreme pathways and Kirchhoff's second law
-
Price, N.D.; Famili, I.; Beard, D.A.; Palsson, B.O. Extreme pathways and Kirchhoff's second law. Biophys. J., 2002, 83(5), 2879-2882.
-
(2002)
Biophys. J.
, vol.83
, Issue.5
, pp. 2879-2882
-
-
Price, N.D.1
Famili, I.2
Beard, D.A.3
Palsson, B.O.4
-
36
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox
-
Becker, S.A.; Feist, A.M.; Mo, M.L.; Hannum, G.; Palsson, B.O.; Herrgard, M.J. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat. Protoc., 2007, 2(3), 727-738.
-
(2007)
Nat. Protoc.
, vol.2
, Issue.3
, pp. 727-738
-
-
Becker, S.A.1
Feist, A.M.2
Mo, M.L.3
Hannum, G.4
Palsson, B.O.5
Herrgard, M.J.6
-
37
-
-
0037008673
-
Transcriptional regulation in constraints-based metabolic models of Escherichia coli
-
Covert, M.W.; Palsson, B.O. Transcriptional regulation in constraints-based metabolic models of Escherichia coli. J. Biol. Chem., 2002, 277(31), 28058-28064.
-
(2002)
J. Biol. Chem.
, vol.277
, Issue.31
, pp. 28058-28064
-
-
Covert, M.W.1
Palsson, B.O.2
-
38
-
-
77749320898
-
What is flux balance analysis?
-
Orth, J.D.; Thiele, I.; Palsson, B.O. What is flux balance analysis? Nat. Biotechnol., 2010, 28(3), 245-248.
-
(2010)
Nat. Biotechnol.
, vol.28
, Issue.3
, pp. 245-248
-
-
Orth, J.D.1
Thiele, I.2
Palsson, B.O.3
-
39
-
-
0037441522
-
Advancing drug discovery through systems biology
-
Davidov, E.; Holland, J.; Marple, E.; Naylor, S. Advancing drug discovery through systems biology. Drug Discov. Today, 2003, 8(4), 175-183.
-
(2003)
Drug Discov. Today
, vol.8
, Issue.4
, pp. 175-183
-
-
Davidov, E.1
Holland, J.2
Marple, E.3
Naylor, S.4
-
40
-
-
67349093990
-
From systems biology to fuel--Chlamydomonas reinhardtii as a model for a systems biology approach to improve biohydrogen production
-
Rupprecht, J. From systems biology to fuel--Chlamydomonas reinhardtii as a model for a systems biology approach to improve biohydrogen production. J. Biotechnol., 2009, 142(1), 10-20.
-
(2009)
J. Biotechnol.
, vol.142
, Issue.1
, pp. 10-20
-
-
Rupprecht, J.1
-
41
-
-
33846017352
-
The nature of systems biology
-
Bruggeman, F.J.; Westerhoff, H.V. The nature of systems biology. Trends Microbiol., 2007, 15(1), 45-50.
-
(2007)
Trends Microbiol.
, vol.15
, Issue.1
, pp. 45-50
-
-
Bruggeman, F.J.1
Westerhoff, H.V.2
-
42
-
-
0037174638
-
Systems biology. Life's complexity pyramid
-
Oltvai, Z.N.; Barabasi, A.L. Systems biology. Life's complexity pyramid. Science, 2002, 298(5594), 763-764.
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 763-764
-
-
Oltvai, Z.N.1
Barabasi, A.L.2
-
43
-
-
33745433792
-
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data
-
2006 0034
-
Kummel, A.; Panke, S.; Heinemann, M. Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data. Mol. Syst. Biol., 2006, 2, 2006 0034.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Kummel, A.1
Panke, S.2
Heinemann, M.3
-
44
-
-
34248632008
-
Toward the automated generation of genome-scale metabolic networks in the SEED
-
DeJongh, M.; Formsma, K.; Boillot, P.; Gould, J.; Rycenga, M.; Best, A. Toward the automated generation of genome-scale metabolic networks in the SEED. BMC Bioinformatics, 2007, 8, 139.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 139
-
-
DeJongh, M.1
Formsma, K.2
Boillot, P.3
Gould, J.4
Rycenga, M.5
Best, A.6
-
45
-
-
11244328060
-
The Pathway Tools software
-
Karp, P.D.; Paley, S.; Romero, P. The Pathway Tools software. Bioinformatics, 2002, 18 Suppl 1, S225-232.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Karp, P.D.1
Paley, S.2
Romero, P.3
-
46
-
-
14844349363
-
metaSHARK: Software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
-
Pinney, J.W.; Shirley, M.W.; McConkey, G.A.; Westhead, D.R. metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella. Nucleic Acids Res., 2005, 33(4), 1399-1409.
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.4
, pp. 1399-1409
-
-
Pinney, J.W.1
Shirley, M.W.2
McConkey, G.A.3
Westhead, D.R.4
-
48
-
-
13444272087
-
Entrez Gene: Gene-centered information at NCBI
-
Maglott, D.; Ostell, J.; Pruitt, K.D.; Tatusova, T. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res., 2005, 33(Database issue), D54-58.
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.Database issue
-
-
Maglott, D.1
Ostell, J.2
Pruitt, K.D.3
Tatusova, T.4
-
49
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J.; Sugnet, C.W.; Furey, T.S.; Roskin, K.M.; Pringle, T.H.; Zahler, A.M.; Haussler, D. The human genome browser at UCSC. Genome Res, 2002, 12(6), 996-1006.
-
(2002)
Genome Res
, vol.12
, Issue.6
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
50
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res., 2012, 40(Database issue), D71-75.
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.Database issue
-
-
-
51
-
-
78651321210
-
Bovine Genome Database: Integrated tools for genome annotation and discovery
-
Childers, C.P.; Reese, J.T.; Sundaram, J.P.; Vile, D.C.; Dickens, C.M.; Childs, K.L.; Salih, H.; Bennett, A.K.; Hagen, D.E.; Adelson, D.L.; Elsik, C.G. Bovine Genome Database: integrated tools for genome annotation and discovery. Nucleic Acids Res., 2011, 39(Database issue), D830-834.
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.Database issue
-
-
Childers, C.P.1
Reese, J.T.2
Sundaram, J.P.3
Vile, D.C.4
Dickens, C.M.5
Childs, K.L.6
Salih, H.7
Bennett, A.K.8
Hagen, D.E.9
Adelson, D.L.10
Elsik, C.G.11
-
52
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa, M.; Goto, S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 2000, 28(1), 27-30.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
53
-
-
0345863907
-
BRENDA, the enzyme database: Updates and major new developments
-
Schomburg, I.; Chang, A.; Ebeling, C.; Gremse, M.; Heldt, C.; Huhn, G.; Schomburg, D. BRENDA, the enzyme database: updates and major new developments. Nucleic Acids Res., 2004, 32(Database issue), D431-433.
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.Database issue
-
-
Schomburg, I.1
Chang, A.2
Ebeling, C.3
Gremse, M.4
Heldt, C.5
Huhn, G.6
Schomburg, D.7
-
54
-
-
58149185126
-
BRENDA, AMENDA and FRENDA the enzyme information system: New content and tools in 2009
-
Chang, A.; Scheer, M.; Grote, A.; Schomburg, I.; Schomburg, D. BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. Nucleic Acids Res., 2009, 37(Database issue), D588-592.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.Database issue
-
-
Chang, A.1
Scheer, M.2
Grote, A.3
Schomburg, I.4
Schomburg, D.5
-
55
-
-
8444225024
-
NIH Molecular Libraries Initiative
-
Austin, C.P.; Brady, L.S.; Insel, T.R.; Collins, F.S. NIH Molecular Libraries Initiative. Science, 2004, 306(5699), 1138-1139.
-
(2004)
Science
, vol.306
, Issue.5699
, pp. 1138-1139
-
-
Austin, C.P.1
Brady, L.S.2
Insel, T.R.3
Collins, F.S.4
-
56
-
-
0035272616
-
Chemical registries-in the fourth decade of service
-
Buntrock, R.E. Chemical registries-in the fourth decade of service. J. Chem. Inf. Comput. Sci, 2001, 41(2), 259-263.
-
(2001)
J. Chem. Inf. Comput. Sci
, vol.41
, Issue.2
, pp. 259-263
-
-
Buntrock, R.E.1
-
57
-
-
38549127678
-
ChEBI: A database and ontology for chemical entities of biological interest
-
Degtyarenko, K.; de Matos, P.; Ennis, M.; Hastings, J.; Zbinden, M.; McNaught, A.; Alcantara, R.; Darsow, M.; Guedj, M.; Ashburner, M. ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res., 2008, 36(Database issue), D344-350.
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.Database issue
-
-
Degtyarenko, K.1
de Matos, P.2
Ennis, M.3
Hastings, J.4
Zbinden, M.5
McNaught, A.6
Alcantara, R.7
Darsow, M.8
Guedj, M.9
Ashburner, M.10
-
58
-
-
33846040629
-
TransportDB: A comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels
-
Ren, Q.; Chen, K.; Paulsen, I.T. TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels. Nucleic Acids Res., 2007, 35(Database issue), D274-279.
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.Database issue
-
-
Ren, Q.1
Chen, K.2
Paulsen, I.T.3
-
59
-
-
58149177166
-
Reactome knowledgebase of human biological pathways and processes
-
Matthews, L.; Gopinath, G.; Gillespie, M.; Caudy, M.; Croft, D.; de Bono, B.; Garapati, P.; Hemish, J.; Hermjakob, H.; Jassal, B.; Kanapin, A.; Lewis, S.; Mahajan, S.; May, B.; Schmidt, E.; Vastrik, I.; Wu, G.; Birney, E.; Stein, L.; D'Eustachio, P. Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res., 2009, 37(Database issue), D619-622.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.Database issue
-
-
Matthews, L.1
Gopinath, G.2
Gillespie, M.3
Caudy, M.4
Croft, D.5
de Bono, B.6
Garapati, P.7
Hemish, J.8
Hermjakob, H.9
Jassal, B.10
Kanapin, A.11
Lewis, S.12
Mahajan, S.13
May, B.14
Schmidt, E.15
Vastrik, I.16
Wu, G.17
Birney, E.18
Stein, L.19
D'Eustachio, P.20
more..
-
60
-
-
77950988540
-
Neither molecular diversity of the envelope, immunosuppression status, nor proviral load causes indeterminate HTLV western blot profiles in samples from human T-cell lymphotropic virus type 2 (HTLV-2)-infected individuals
-
Olah, I.; Fukumori, L.M.; Smid, J.; de Oliveira, A.C.; Duarte, A.J.; Casseb, J. Neither molecular diversity of the envelope, immunosuppression status, nor proviral load causes indeterminate HTLV western blot profiles in samples from human T-cell lymphotropic virus type 2 (HTLV-2)-infected individuals. J. Med. Virol., 2010, 82(5), 837-842.
-
(2010)
J. Med. Virol.
, vol.82
, Issue.5
, pp. 837-842
-
-
Olah, I.1
Fukumori, L.M.2
Smid, J.3
de Oliveira, A.C.4
Duarte, A.J.5
Casseb, J.6
-
61
-
-
0037342537
-
The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
-
Hucka, M.; Finney, A.; Sauro, H.M.; Bolouri, H.; Doyle, J.C.; Kitano, H.; Arkin, A.P.; Bornstein, B.J.; Bray, D.; Cornish-Bowden, A.; Cuellar, A.A.; Dronov, S.; Gilles, E.D.; Ginkel, M.; Gor, V.; Goryanin, II; Hedley, W.J.; Hodgman, T.C.; Hofmeyr, J.H.; Hunter, P.J.; Juty, N.S.; Kasberger, J.L.; Kremling, A.; Kummer, U.; Le Novere, N.; Loew, L.M.; Lucio, D.; Mendes, P.; Minch, E.; Mjolsness, E.D.; Nakayama, Y.; Nelson, M.R.; Nielsen, P.F.; Sakurada, T.; Schaff, J.C.; Shapiro, B.E.; Shimizu, T.S.; Spence, H.D.; Stelling, J.; Takahashi, K.; Tomita, M.; Wagner, J.; Wang, J. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 2003, 19(4), 524-531.
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
Arkin, A.P.7
Bornstein, B.J.8
Bray, D.9
Cornish-Bowden, A.10
Cuellar, A.A.11
Dronov, S.12
Gilles, E.D.13
Ginkel, M.14
Gor, V.15
Goryanin, I.I.16
Hedley, W.J.17
Hodgman, T.C.18
Hofmeyr, J.H.19
Hunter, P.J.20
Juty, N.S.21
Kasberger, J.L.22
Kremling, A.23
Kummer, U.24
Le Novere, N.25
Loew, L.M.26
Lucio, D.27
Mendes, P.28
Minch, E.29
Mjolsness, E.D.30
Nakayama, Y.31
Nelson, M.R.32
Nielsen, P.F.33
Sakurada, T.34
Schaff, J.C.35
Shapiro, B.E.36
Shimizu, T.S.37
Spence, H.D.38
Stelling, J.39
Takahashi, K.40
Tomita, M.41
Wagner, J.42
Wang, J.43
more..
-
62
-
-
77952886804
-
The biomass objective function
-
Feist, A.M.; Palsson, B.O. The biomass objective function. Curr. Opin. Microbiol., 2010, 13(3), 344-349.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, Issue.3
, pp. 344-349
-
-
Feist, A.M.1
Palsson, B.O.2
-
63
-
-
77957117220
-
Computationally efficient flux variability analysis
-
Gudmundsson, S.; Thiele, I. Computationally efficient flux variability analysis. BMC Bioinformatics, 2010, 11, 489.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 489
-
-
Gudmundsson, S.1
Thiele, I.2
-
64
-
-
78651335279
-
Systematizing the generation of missing metabolic knowledge
-
Orth, J.D.; Palsson, B.O. Systematizing the generation of missing metabolic knowledge. Biotechnol. Bioeng., 2010, 107(3), 403-412.
-
(2010)
Biotechnol. Bioeng.
, vol.107
, Issue.3
, pp. 403-412
-
-
Orth, J.D.1
Palsson, B.O.2
-
65
-
-
71149117622
-
Metabolic systems biology
-
Palsson, B. Metabolic systems biology. FEBS Lett., 2009, 583(24), 3900-3904.
-
(2009)
FEBS Lett.
, vol.583
, Issue.24
, pp. 3900-3904
-
-
Palsson, B.1
-
66
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M.; Shalon, D.; Davis, R.W.; Brown, P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 1995, 270(5235), 467-470.
-
(1995)
Science
, vol.270
, Issue.5235
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
67
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z.; Gerstein, M.; Snyder, M. RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet., 2009, 10(1), 57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, Issue.1
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
68
-
-
5044227742
-
The evolution of molecular biology into systems biology
-
Westerhoff, H.V.; Palsson, B.O. The evolution of molecular biology into systems biology. Nat. Biotechnol., 2004, 22(10), 1249-1252.
-
(2004)
Nat. Biotechnol.
, vol.22
, Issue.10
, pp. 1249-1252
-
-
Westerhoff, H.V.1
Palsson, B.O.2
-
69
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Chomczynski, P.; Sacchi, N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem., 1987, 162(1), 156-159.
-
(1987)
Anal. Biochem.
, vol.162
, Issue.1
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
70
-
-
33645794065
-
Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function
-
Loor, J.J.; Dann, H.M.; Everts, R.E.; Oliveira, R.; Green, C.A.; Guretzky, N.A.; Rodriguez-Zas, S.L.; Lewin, H.A.; Drackley, J.K. Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function. Physiol. Genomics, 2005, 23(2), 217-226.
-
(2005)
Physiol. Genomics
, vol.23
, Issue.2
, pp. 217-226
-
-
Loor, J.J.1
Dann, H.M.2
Everts, R.E.3
Oliveira, R.4
Green, C.A.5
Guretzky, N.A.6
Rodriguez-Zas, S.L.7
Lewin, H.A.8
Drackley, J.K.9
-
71
-
-
33749442896
-
Plane of nutrition prepartum alters hepatic gene expression and function in dairy cows as assessed by longitudinal transcript and metabolic profiling
-
Loor, J.J.; Dann, H.M.; Guretzky, N.A.; Everts, R.E.; Oliveira, R.; Green, C.A.; Litherland, N.B.; Rodriguez-Zas, S.L.; Lewin, H.A.; Drackley, J.K. Plane of nutrition prepartum alters hepatic gene expression and function in dairy cows as assessed by longitudinal transcript and metabolic profiling. Physiol. Genomics, 2006, 27(1), 29-41.
-
(2006)
Physiol. Genomics
, vol.27
, Issue.1
, pp. 29-41
-
-
Loor, J.J.1
Dann, H.M.2
Guretzky, N.A.3
Everts, R.E.4
Oliveira, R.5
Green, C.A.6
Litherland, N.B.7
Rodriguez-Zas, S.L.8
Lewin, H.A.9
Drackley, J.K.10
-
72
-
-
33846996830
-
Spontaneous uterine rupture during pregnancy, related to a horse fall 8 weeks earlier
-
Michiels, I.; De Valck, C.; De Loor, J.; Hendriks, J.; Jacquemyn, Y.; Tjalma, W.A. Spontaneous uterine rupture during pregnancy, related to a horse fall 8 weeks earlier. Acta. Obstet. Gynecol. Scand., 2007, 86(3), 380-381.
-
(2007)
Acta. Obstet. Gynecol. Scand.
, vol.86
, Issue.3
, pp. 380-381
-
-
Michiels, I.1
De Valck, C.2
De Loor, J.3
Hendriks, J.4
Jacquemyn, Y.5
Tjalma, W.A.6
-
73
-
-
36148969152
-
Computational approaches to analysis of DNA microarray data
-
Quackenbush, J. Computational approaches to analysis of DNA microarray data. Yearb. Med. Inform., 2006, 91-103.
-
(2006)
Yearb. Med. Inform.
, pp. 91-103
-
-
Quackenbush, J.1
-
75
-
-
0007015235
-
-
Cary, NC, Cary, NC
-
SAS, Institute, Cary, NC, 2000: Cary, NC.
-
(2000)
SAS, Institute
-
-
-
77
-
-
33645762226
-
A sharper Bonferroni procedure for multiple tests of significance
-
Hochberg, Y. A sharper Bonferroni procedure for multiple tests of significance. Biometrika, 1988, 75(4).
-
(1988)
Biometrika
, vol.75
, Issue.4
-
-
Hochberg, Y.1
-
78
-
-
0001677717
-
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
-
Benjamini, Y.; Hochberg, Y. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J. Royal. Statistical Soc., 1995, 57(1).
-
(1995)
J. Royal. Statistical Soc.
, vol.57
, Issue.1
-
-
Benjamini, Y.1
Hochberg, Y.2
-
79
-
-
0037433040
-
Identifying differentially expressed genes using false discovery rate controlling procedures
-
Reiner, A.; Yekutieli, D.; Benjamini, Y. Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics, 2003, 19(3), 368-375.
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 368-375
-
-
Reiner, A.1
Yekutieli, D.2
Benjamini, Y.3
-
80
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D.W.; Sherman, B.T.; Lempicki, R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 2009, 4(1), 44-57.
-
(2009)
Nat. Protoc.
, vol.4
, Issue.1
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
81
-
-
60149086624
-
BioDBnet: The biological database network
-
Mudunuri, U.; Che, A.; Yi, M.; Stephens, R.M. bioDBnet: the biological database network. Bioinformatics, 2009, 25(4), 555-556.
-
(2009)
Bioinformatics
, vol.25
, Issue.4
, pp. 555-556
-
-
Mudunuri, U.1
Che, A.2
Yi, M.3
Stephens, R.M.4
-
82
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang, D.W.; Sherman, B.T.; Lempicki, R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res., 2009, 37(1), 1-13.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.1
, pp. 1-13
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
83
-
-
0036916269
-
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
-
Papin, J.A.; Price, N.D.; Palsson, B.O. Extreme pathway lengths and reaction participation in genome-scale metabolic networks. Genome Res., 2002, 12(12), 1889-1900.
-
(2002)
Genome Res.
, vol.12
, Issue.12
, pp. 1889-1900
-
-
Papin, J.A.1
Price, N.D.2
Palsson, B.O.3
-
84
-
-
37549011823
-
Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows
-
Loor, J.J.; Everts, R.E.; Bionaz, M.; Dann, H.M.; Morin, D.E.; Oliveira, R.; Rodriguez-Zas, S.L.; Drackley, J.K.; Lewin, H.A. Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows. Physiol. Genomics, 2007, 32(1), 105-116.
-
(2007)
Physiol. Genomics
, vol.32
, Issue.1
, pp. 105-116
-
-
Loor, J.J.1
Everts, R.E.2
Bionaz, M.3
Dann, H.M.4
Morin, D.E.5
Oliveira, R.6
Rodriguez-Zas, S.L.7
Drackley, J.K.8
Lewin, H.A.9
-
85
-
-
0036169031
-
Genesis: Cluster analysis of microarray data
-
Sturn, A.; Quackenbush, J.; Trajanoski, Z. Genesis: cluster analysis of microarray data. Bioinformatics, 2002, 18(1), 207-208.
-
(2002)
Bioinformatics
, vol.18
, Issue.1
, pp. 207-208
-
-
Sturn, A.1
Quackenbush, J.2
Trajanoski, Z.3
-
86
-
-
65649098723
-
Adipogenic and energy metabolism gene networks in longissimus lumborum during rapid post-weaning growth in Angus and Angus x Simmental cattle fed high-starch or low-starch diets
-
Graugnard, D.E.; Piantoni, P.; Bionaz, M.; Berger, L.L.; Faulkner, D.B.; Loor, J.J. Adipogenic and energy metabolism gene networks in longissimus lumborum during rapid post-weaning growth in Angus and Angus x Simmental cattle fed high-starch or low-starch diets. BMC Genomics, 2009, 10, 142.
-
(2009)
BMC Genomics
, vol.10
, pp. 142
-
-
Graugnard, D.E.1
Piantoni, P.2
Bionaz, M.3
Berger, L.L.4
Faulkner, D.B.5
Loor, J.J.6
-
87
-
-
84858374497
-
A Novel Dynamic Impact Approach (DIA) for Functional Analysis of Time-Course Omics Studies: Validation Using the Bovine Mammary Transcriptome
-
Bionaz, M.; Periasamy, K.; Rodriguez-Zas, S.L.; Hurley, W.L.; Loor, J.J. A Novel Dynamic Impact Approach (DIA) for Functional Analysis of Time-Course Omics Studies: Validation Using the Bovine Mammary Transcriptome. PloS One, 2012, 7(3), e32455.
-
(2012)
PloS One
, vol.7
, Issue.3
-
-
Bionaz, M.1
Periasamy, K.2
Rodriguez-Zas, S.L.3
Hurley, W.L.4
Loor, J.J.5
-
88
-
-
84858043632
-
Old and New Stories: Revelations from Functional Analysis of the Bovine Mammary Transcriptome during the Lactation Cycle
-
Bionaz, M.; Periasamy, K.; Rodriguez-Zas, S.L.; Everts, R.E.; Lewin, H.A.; Hurley, W.L.; Loor, J.J. Old and New Stories: Revelations from Functional Analysis of the Bovine Mammary Transcriptome during the Lactation Cycle. PloS One, 2012, 7(3), e33268.
-
(2012)
PloS One
, vol.7
, Issue.3
-
-
Bionaz, M.1
Periasamy, K.2
Rodriguez-Zas, S.L.3
Everts, R.E.4
Lewin, H.A.5
Hurley, W.L.6
Loor, J.J.7
-
89
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa, M.; Araki, M.; Goto, S.; Hattori, M.; Hirakawa, M.; Itoh, M.; Katayama, T.; Kawashima, S.; Okuda, S.; Tokimatsu, T.; Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res., 2008, 36(Database issue), D480-484.
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.Database issue
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
90
-
-
0036683181
-
Linking the genes: Inferring quantitative gene networks from microarray data
-
de la Fuente, A.; Brazhnik, P.; Mendes, P. Linking the genes: inferring quantitative gene networks from microarray data. Trends Genet., 2002, 18(8), 395-398.
-
(2002)
Trends Genet.
, vol.18
, Issue.8
, pp. 395-398
-
-
de la Fuente, A.1
Brazhnik, P.2
Mendes, P.3
-
91
-
-
2942544498
-
Protein interaction networks from yeast to human
-
Bork, P.; Jensen, L.J.; von Mering, C.; Ramani, A.K.; Lee, I.; Marcotte, E.M. Protein interaction networks from yeast to human. Curr. Opin. Struct. Biol., 2004, 14(3), 292-299.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, Issue.3
, pp. 292-299
-
-
Bork, P.1
Jensen, L.J.2
von Mering, C.3
Ramani, A.K.4
Lee, I.5
Marcotte, E.M.6
-
92
-
-
84855659425
-
Functional Adaptations of the Transcriptome to Mastitis-Causing Pathogens: The Mammary Gland and Beyond
-
Loor, J.J.; Moyes, K.M.; Bionaz, M. Functional Adaptations of the Transcriptome to Mastitis-Causing Pathogens: The Mammary Gland and Beyond. J. Mammary Gland Biol. Neoplasia, 2011.
-
(2011)
J. Mammary Gland Biol. Neoplasia
-
-
Loor, J.J.1
Moyes, K.M.2
Bionaz, M.3
-
93
-
-
77949531040
-
NeatMap--non-clustering heat map alternatives in R
-
Rajaram, S.; Oono, Y. NeatMap--non-clustering heat map alternatives in R. BMC Bioinformatics, 2010, 11, 45.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 45
-
-
Rajaram, S.1
Oono, Y.2
-
94
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B.; Spellman, P.T.; Brown, P.O.; Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad Sci. USA., 1998, 95(25), 14863-14868.
-
(1998)
Proc. Natl. Acad Sci. USA.
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
95
-
-
84863757455
-
Systems biology and animal nutrition: Insights from the dairy cow during growth and the lactation cycle
-
ed. H.W.a.A.B. MFW te Pas, Wiley-Blackwell, Oxford, UK
-
Loor, J.J.; Bionaz, M.a.; Invernizzi, G., Systems biology and animal nutrition: insights from the dairy cow during growth and the lactation cycle. Systems Biology and Livestock Science, ed. H.W.a.A.B. MFW te Pas2011, Wiley-Blackwell, Oxford, UK.
-
(2011)
Systems Biology and Livestock Science
-
-
Loor, J.J.1
Bionaz, M.A.2
Invernizzi, G.3
-
96
-
-
70349130410
-
Negative energy balance alters global gene expression and immune responses in the uterus of postpartum dairy cows
-
Wathes, D.C.; Cheng, Z.R.; Chowdhury, W.; Fenwick, M.A.; Fitzpatrick, R.; Morris, D.G.; Patton, J.; Murphy, J.J. Negative energy balance alters global gene expression and immune responses in the uterus of postpartum dairy cows. Physiol. Genomics, 2009, 39(1), 1-13.
-
(2009)
Physiol. Genomics
, vol.39
, Issue.1
, pp. 1-13
-
-
Wathes, D.C.1
Cheng, Z.R.2
Chowdhury, W.3
Fenwick, M.A.4
Fitzpatrick, R.5
Morris, D.G.6
Patton, J.7
Murphy, J.J.8
-
97
-
-
34547170043
-
The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture
-
Caetano-Anolles, G.; Kim, H.S.; Mittenthal, J.E. The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture. Proc. Natl. Acad. Sci. USA., 2007, 104(22), 9358-9363.
-
(2007)
Proc. Natl. Acad. Sci. USA.
, vol.104
, Issue.22
, pp. 9358-9363
-
-
Caetano-Anolles, G.1
Kim, H.S.2
Mittenthal, J.E.3
-
98
-
-
35348826030
-
Functional genomics of the chicken--a model organism
-
Cogburn, L.A.; Porter, T.E.; Duclos, M.J.; Simon, J.; Burgess, S.C.; Zhu, J.J.; Cheng, H.H.; Dodgson, J.B.; Burnside, J. Functional genomics of the chicken--a model organism. Poult. Sci., 2007, 86(10), 2059-2094.
-
(2007)
Poult. Sci.
, vol.86
, Issue.10
, pp. 2059-2094
-
-
Cogburn, L.A.1
Porter, T.E.2
Duclos, M.J.3
Simon, J.4
Burgess, S.C.5
Zhu, J.J.6
Cheng, H.H.7
Dodgson, J.B.8
Burnside, J.9
-
99
-
-
52649146945
-
Centennial paper: Proteomics in animal science
-
Lippolis, J.D.; Reinhardt, T.A. Centennial paper: Proteomics in animal science. J. Anim. Sci., 2008, 86(9), 2430-2441.
-
(2008)
J. Anim. Sci.
, vol.86
, Issue.9
, pp. 2430-2441
-
-
Lippolis, J.D.1
Reinhardt, T.A.2
-
100
-
-
77954503824
-
Genomics of metabolic adaptations in the peripartal cow
-
Loor, J.J. Genomics of metabolic adaptations in the peripartal cow. Animal, 2010, 4(7), 1110-1139.
-
(2010)
Animal
, vol.4
, Issue.7
, pp. 1110-1139
-
-
Loor, J.J.1
-
101
-
-
84863898329
-
A systems approach to integrating genetics, nutrition and metabolic efficiency in dairy cattle
-
McNamara, J.P. A systems approach to integrating genetics, nutrition and metabolic efficiency in dairy cattle. J. Anim Sci., 2011.
-
(2011)
J. Anim Sci.
-
-
McNamara, J.P.1
-
102
-
-
84862112662
-
Characterization of the longissimus lumborum transcriptome response to adding propionate to the diet of growing Angus beef steers
-
Baldwin, R.L.t.; Li, R.W.; Li, C.J.; Thomson, J.M.; Bequette, B.J. Characterization of the longissimus lumborum transcriptome response to adding propionate to the diet of growing Angus beef steers. Physiol. Genomics, 2012, 44(10), 543-550.
-
(2012)
Physiol. Genomics
, vol.44
, Issue.10
, pp. 543-550
-
-
Baldwin, R.L.T.1
Li, R.W.2
Li, C.J.3
Thomson, J.M.4
Bequette, B.J.5
-
103
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi, A.L.; Oltvai, Z.N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet., 2004, 5(2), 101-113.
-
(2004)
Nat. Rev. Genet.
, vol.5
, Issue.2
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
104
-
-
51349092391
-
Network-based prediction of human tissue-specific metabolism
-
Shlomi, T.; Cabili, M.N.; Herrgard, M.J.; Palsson, B.O.; Ruppin, E. Network-based prediction of human tissue-specific metabolism. Nat. Biotechnol, 2008, 26(9), 1003-1010.
-
(2008)
Nat. Biotechnol
, vol.26
, Issue.9
, pp. 1003-1010
-
-
Shlomi, T.1
Cabili, M.N.2
Herrgard, M.J.3
Palsson, B.O.4
Ruppin, E.5
-
105
-
-
77956407882
-
HepatoNet1: A comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology
-
Gille, C.; Bolling, C.; Hoppe, A.; Bulik, S.; Hoffmann, S.; Hubner, K.; Karlstadt, A.; Ganeshan, R.; Konig, M.; Rother, K.; Weidlich, M.; Behre, J.; Holzhutter, H.G. HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology. Mol. Syst. Biol., 2010, 6, 411.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 411
-
-
Gille, C.1
Bolling, C.2
Hoppe, A.3
Bulik, S.4
Hoffmann, S.5
Hubner, K.6
Karlstadt, A.7
Ganeshan, R.8
Konig, M.9
Rother, K.10
Weidlich, M.11
Behre, J.12
Holzhutter, H.G.13
-
106
-
-
77956417789
-
Computational reconstruction of tissue-specific metabolic models: Application to human liver metabolism
-
Jerby, L.; Shlomi, T.; Ruppin, E. Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism. Mol. Syst. Biol., 2010, 6, 401.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 401
-
-
Jerby, L.1
Shlomi, T.2
Ruppin, E.3
-
107
-
-
84864279708
-
Reconstruction of metabolic network in the bovine mammary gland tissue
-
Wang, C.; Wang, J.; Ju, Z.; Zhai, R.; Zhou, L.; Li, Q.; Li, J.; Li, R.; Huang, J.; Zhong, J. Reconstruction of metabolic network in the bovine mammary gland tissue. Mol. Biol. Rep., 2012, 39(7), 7311-7318.
-
(2012)
Mol. Biol. Rep.
, vol.39
, Issue.7
, pp. 7311-7318
-
-
Wang, C.1
Wang, J.2
Ju, Z.3
Zhai, R.4
Zhou, L.5
Li, Q.6
Li, J.7
Li, R.8
Huang, J.9
Zhong, J.10
-
108
-
-
84863970530
-
Transcriptomics of muscle abd fat development in growing cattle
-
ed. G.M. Crovetto, Parma, Italy, Wageningen Academic Publishers
-
Loor, J.J., Transcriptomics of muscle abd fat development in growing cattle. Energy and protein metabolism and nutrition ed. G.M. Crovetto2010, Parma, Italy, Wageningen Academic Publishers.
-
(2010)
Energy and protein metabolism and nutrition
-
-
Loor, J.J.1
-
109
-
-
67349168681
-
Cholesterol synthesis in the lactating cow: Induced expression of candidate genes
-
Viturro, E.; Koenning, M.; Kroemer, A.; Schlamberger, G.; Wiedemann, S.; Kaske, M.; Meyer, H.H. Cholesterol synthesis in the lactating cow: Induced expression of candidate genes. J. Steroid Biochem. Mol. Biol., 2009, 115(1-2), 62-67.
-
(2009)
J. Steroid Biochem. Mol. Biol.
, vol.115
, Issue.1-2
, pp. 62-67
-
-
Viturro, E.1
Koenning, M.2
Kroemer, A.3
Schlamberger, G.4
Wiedemann, S.5
Kaske, M.6
Meyer, H.H.7
-
110
-
-
0029050053
-
Hepatic detoxification of ammonia in the ovine liver: Possible consequences for amino acid catabolism
-
Lobley, G.E.; Connell, A.; Lomax, M.A.; Brown, D.S.; Milne, E.; Calder, A.G.; Farningham, D.A. Hepatic detoxification of ammonia in the ovine liver: possible consequences for amino acid catabolism. Br. J. Nutr., 1995, 73(5), 667-685.
-
(1995)
Br. J. Nutr.
, vol.73
, Issue.5
, pp. 667-685
-
-
Lobley, G.E.1
Connell, A.2
Lomax, M.A.3
Brown, D.S.4
Milne, E.5
Calder, A.G.6
Farningham, D.A.7
-
111
-
-
0039478288
-
Urea Cycle Enzymes in Tissues (Liver, Rumen Epithelium, Heart, Kidney, Lung and Spleen) of Sheep (Ovis-Aries)
-
Emmanuel, B. Urea Cycle Enzymes in Tissues (Liver, Rumen Epithelium, Heart, Kidney, Lung and Spleen) of Sheep (Ovis-Aries). Comp. Biochem. Physiol. B-Biochem. Mol. Biol., 1980, 65(4), 693-697.
-
(1980)
Comp. Biochem. Physiol. B-Biochem. Mol. Biol.
, vol.65
, Issue.4
, pp. 693-697
-
-
Emmanuel, B.1
-
112
-
-
79952031702
-
Gluconeogenesis in dairy cows: The secret of making sweet milk from sour dough
-
Aschenbach, J.R.; Kristensen, N.B.; Donkin, S.S.; Hammon, H.M.; Penner, G.B. Gluconeogenesis in dairy cows: the secret of making sweet milk from sour dough. IUBMB Life, 2010, 62(12), 869-877.
-
(2010)
IUBMB Life
, vol.62
, Issue.12
, pp. 869-877
-
-
Aschenbach, J.R.1
Kristensen, N.B.2
Donkin, S.S.3
Hammon, H.M.4
Penner, G.B.5
-
113
-
-
0033227135
-
ADSA Foundation Scholar Award. Biology of dairy cows during the transition period: The final frontier?
-
Drackley, J.K. ADSA Foundation Scholar Award. Biology of dairy cows during the transition period: the final frontier? J. Dairy Sci., 1999, 82(11), 2259-2273.
-
(1999)
J. Dairy Sci.
, vol.82
, Issue.11
, pp. 2259-2273
-
-
Drackley, J.K.1
-
114
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang da, W.; Sherman, B.T.; Lempicki, R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res., 2009, 37(1), 1-13.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.1
, pp. 1-13
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
115
-
-
0036965887
-
Biosynthesis, bioproduction and novel roles of ubiquinone
-
Kawamukai, M. Biosynthesis, bioproduction and novel roles of ubiquinone. J. Biosci. Bioeng., 2002, 94(6), 511-517.
-
(2002)
J. Biosci. Bioeng.
, vol.94
, Issue.6
, pp. 511-517
-
-
Kawamukai, M.1
-
116
-
-
0026132942
-
Role of sulfur and chloride in the dietary cation-anion balance equation for lactating dairy cattle
-
Tucker, W.B.; Hogue, J.F.; Waterman, D.F.; Swenson, T.S.; Xin, Z.; Hemken, R.W.; Jackson, J.A.; Adams, G.D.; Spicer, L.J. Role of sulfur and chloride in the dietary cation-anion balance equation for lactating dairy cattle. J. Anim. Sci., 1991, 69(3), 1205-1213.
-
(1991)
J. Anim. Sci.
, vol.69
, Issue.3
, pp. 1205-1213
-
-
Tucker, W.B.1
Hogue, J.F.2
Waterman, D.F.3
Swenson, T.S.4
Xin, Z.5
Hemken, R.W.6
Jackson, J.A.7
Adams, G.D.8
Spicer, L.J.9
-
117
-
-
80052555719
-
Tolerance of cattle to increased dietary sulfur and effect of dietary cation-anion balance
-
Spears, J.W.; Lloyd, K.E.; Fry, R.S. Tolerance of cattle to increased dietary sulfur and effect of dietary cation-anion balance. J. Anim. Sci., 2011, 89(8), 2502-2509.
-
(2011)
J. Anim. Sci.
, vol.89
, Issue.8
, pp. 2502-2509
-
-
Spears, J.W.1
Lloyd, K.E.2
Fry, R.S.3
-
118
-
-
5444259851
-
The complement system in regulation of adaptive immunity
-
Carroll, M.C. The complement system in regulation of adaptive immunity. Nat. Immunol., 2004, 5(10), 981-986.
-
(2004)
Nat. Immunol.
, vol.5
, Issue.10
, pp. 981-986
-
-
Carroll, M.C.1
-
119
-
-
34250349580
-
Coordination of steps in single-nucleotide base excision repair mediated by apurinic/apyrimidinic endonuclease 1 and DNA polymerase beta
-
Liu, Y.; Prasad, R.; Beard, W.A.; Kedar, P.S.; Hou, E.W.; Shock, D.D.; Wilson, S.H. Coordination of steps in single-nucleotide base excision repair mediated by apurinic/apyrimidinic endonuclease 1 and DNA polymerase beta. J. Biol. Chem., 2007, 282(18), 13532-13541.
-
(2007)
J. Biol. Chem.
, vol.282
, Issue.18
, pp. 13532-13541
-
-
Liu, Y.1
Prasad, R.2
Beard, W.A.3
Kedar, P.S.4
Hou, E.W.5
Shock, D.D.6
Wilson, S.H.7
-
120
-
-
0037380150
-
Basal transcription factors
-
Reese, J.C. Basal transcription factors. Curr Opin Genet Dev, 2003, 13(2), 114-118.
-
(2003)
Curr Opin Genet Dev
, vol.13
, Issue.2
, pp. 114-118
-
-
Reese, J.C.1
-
121
-
-
70349282020
-
Adipose tissue lipogenic gene networks due to lipid feeding and milk fat depression in lactating cows
-
Thering, B.J.; Graugnard, D.E.; Piantoni, P.; Loor, J.J. Adipose tissue lipogenic gene networks due to lipid feeding and milk fat depression in lactating cows. J. Dairy Sci., 2009, 92(9), 4290-4300.
-
(2009)
J. Dairy Sci.
, vol.92
, Issue.9
, pp. 4290-4300
-
-
Thering, B.J.1
Graugnard, D.E.2
Piantoni, P.3
Loor, J.J.4
-
122
-
-
41449086799
-
Expression of lipolytic genes in the adipose tissue of pregnant and lactating Holstein dairy cattle
-
Sumner, J.M.; McNamara, J.P. Expression of lipolytic genes in the adipose tissue of pregnant and lactating Holstein dairy cattle. J. Dairy Sci., 2007, 90(11), 5237-5246.
-
(2007)
J. Dairy Sci.
, vol.90
, Issue.11
, pp. 5237-5246
-
-
Sumner, J.M.1
McNamara, J.P.2
-
123
-
-
0028048517
-
Lipid metabolism in adipose tissue during lactation: A model of a metabolic control system
-
McNamara, J.P. Lipid metabolism in adipose tissue during lactation: a model of a metabolic control system. J. Nutr., 1994, 124(8 Suppl), 1383S-1391S.
-
(1994)
J. Nutr.
, vol.124
, Issue.8 SUPPL.
-
-
McNamara, J.P.1
-
124
-
-
84863888583
-
Analysis of bovine adipose transcriptomics data during the transition from pregnancy to early lactation using two bioinformatics approaches
-
in, New Orleans, LA, J. Animal Sciences
-
Shahzad, K.; Sumner-Thomson, J.; McNamara, J.P.; Loor, J.J. Analysis of bovine adipose transcriptomics data during the transition from pregnancy to early lactation using two bioinformatics approaches. in ADSA. 2011. New Orleans, LA, J. Animal Sciences.
-
(2011)
ADSA.
-
-
Shahzad, K.1
Sumner-Thomson, J.2
McNamara, J.P.3
Loor, J.J.4
-
125
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
Feist, A.M.; Palsson, B.O. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nat. Biotechnol., 2008, 26(6), 659-667.
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.6
, pp. 659-667
-
-
Feist, A.M.1
Palsson, B.O.2
-
126
-
-
77956411284
-
Towards whole-body systems physiology
-
Kuepfer, L. Towards whole-body systems physiology. Mol. Syst. Biol., 2010, 6, 409.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 409
-
-
Kuepfer, L.1
-
127
-
-
84862152104
-
Effect of the metabolic environment at key stages of follicle development in cattle: Focus on steroid biosynthesis
-
Walsh, S.W.; Mehta, J.P.; McGettigan, P.A.; Browne, J.A.; Forde, N.; Alibrahim, R.M.; Mulligan, F.J.; Loftus, B.; Crowe, M.A.; Matthews, D.; Diskin, M.; Mihm, M.; Evans, A.C. Effect of the metabolic environment at key stages of follicle development in cattle: focus on steroid biosynthesis. Physiol. Genomics., 2012, 44(9), 504-517.
-
(2012)
Physiol. Genomics.
, vol.44
, Issue.9
, pp. 504-517
-
-
Walsh, S.W.1
Mehta, J.P.2
McGettigan, P.A.3
Browne, J.A.4
Forde, N.5
Alibrahim, R.M.6
Mulligan, F.J.7
Loftus, B.8
Crowe, M.A.9
Matthews, D.10
Diskin, M.11
Mihm, M.12
Evans, A.C.13
-
128
-
-
84856091172
-
Transcriptional profiling of bovine milk using RNA sequencing
-
Wickramasinghe, S.; Rincon, G.; Islas-Trejo, A.; Medrano, J.F. Transcriptional profiling of bovine milk using RNA sequencing. BMC Genomics, 2012, 13, 45.
-
(2012)
BMC Genomics
, vol.13
, pp. 45
-
-
Wickramasinghe, S.1
Rincon, G.2
Islas-Trejo, A.3
Medrano, J.F.4
-
129
-
-
84861150736
-
RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance
-
McCabe, M.S.; Waters, S.M.; Morris, D.G.; Kenny, D.A.; Lynn, D.J.; Creevey, C.J. RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance. BMC Genomics, 2012, 13(1), 193.
-
(2012)
BMC Genomics
, vol.13
, Issue.1
, pp. 193
-
-
McCabe, M.S.1
Waters, S.M.2
Morris, D.G.3
Kenny, D.A.4
Lynn, D.J.5
Creevey, C.J.6
-
130
-
-
12144287877
-
Bovine mammary gene expression profiling using a cDNA microarray enhanced for mammary-specific transcripts
-
Suchyta, S.P.; Sipkovsky, S.; Halgren, R.G.; Kruska, R.; Elftman, M.; Weber-Nielsen, M.; Vandehaar, M.J.; Xiao, L.; Tempelman, R.J.; Coussens, P.M. Bovine mammary gene expression profiling using a cDNA microarray enhanced for mammary-specific transcripts. Physiol. Genomics, 2003, 16(1), 8-18.
-
(2003)
Physiol. Genomics
, vol.16
, Issue.1
, pp. 8-18
-
-
Suchyta, S.P.1
Sipkovsky, S.2
Halgren, R.G.3
Kruska, R.4
Elftman, M.5
Weber-Nielsen, M.6
Vandehaar, M.J.7
Xiao, L.8
Tempelman, R.J.9
Coussens, P.M.10
-
131
-
-
11044232520
-
Generation of a bovine oocyte cDNA library and microarray: Resources for identification of genes important for follicular development and early embryogenesis
-
Yao, J.; Ren, X.; Ireland, J.J.; Coussens, P.M.; Smith, T.P.; Smith, G.W. Generation of a bovine oocyte cDNA library and microarray: resources for identification of genes important for follicular development and early embryogenesis. Physiol. Genomics, 2004, 19(1), 84-92.
-
(2004)
Physiol. Genomics
, vol.19
, Issue.1
, pp. 84-92
-
-
Yao, J.1
Ren, X.2
Ireland, J.J.3
Coussens, P.M.4
Smith, T.P.5
Smith, G.W.6
-
132
-
-
17644401370
-
Transcriptional profiling of skeletal muscle tissue from two breeds of cattle
-
Wang, Y.H.; Byrne, K.A.; Reverter, A.; Harper, G.S.; Taniguchi, M.; McWilliam, S.M.; Mannen, H.; Oyama, K.; Lehnert, S.A. Transcriptional profiling of skeletal muscle tissue from two breeds of cattle. Mamm. Genome, 2005, 16(3), 201-210.
-
(2005)
Mamm. Genome
, vol.16
, Issue.3
, pp. 201-210
-
-
Wang, Y.H.1
Byrne, K.A.2
Reverter, A.3
Harper, G.S.4
Taniguchi, M.5
McWilliam, S.M.6
Mannen, H.7
Oyama, K.8
Lehnert, S.A.9
-
133
-
-
9144247717
-
Pregnancy-associated changes in genome-wide gene expression profiles in the liver of cow throughout pregnancy
-
Herath, C.B.; Shiojima, S.; Ishiwata, H.; Katsuma, S.; Kadowaki, T.; Ushizawa, K.; Imai, K.; Takahashi, T.; Hirasawa, A.; Tsujimoto, G.; Hashizume, K. Pregnancy-associated changes in genome-wide gene expression profiles in the liver of cow throughout pregnancy. Biochem. Biophys. Res. Commun., 2004, 313(3), 666-680.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.313
, Issue.3
, pp. 666-680
-
-
Herath, C.B.1
Shiojima, S.2
Ishiwata, H.3
Katsuma, S.4
Kadowaki, T.5
Ushizawa, K.6
Imai, K.7
Takahashi, T.8
Hirasawa, A.9
Tsujimoto, G.10
Hashizume, K.11
-
134
-
-
33745631532
-
Developmental aberrations of liver gene expression in bovine fetuses derived from somatic cell nuclear transplantation
-
Herath, C.B.; Ishiwata, H.; Shiojima, S.; Kadowaki, T.; Katsuma, S.; Ushizawa, K.; Imai, K.; Takahashi, T.; Hirasawa, A.; Takahashi, S.; Izaike, Y.; Tsujimoto, G.; Hashizume, K. Developmental aberrations of liver gene expression in bovine fetuses derived from somatic cell nuclear transplantation. Cloning Stem Cells, 2006, 8(2), 79-95.
-
(2006)
Cloning Stem Cells
, vol.8
, Issue.2
, pp. 79-95
-
-
Herath, C.B.1
Ishiwata, H.2
Shiojima, S.3
Kadowaki, T.4
Katsuma, S.5
Ushizawa, K.6
Imai, K.7
Takahashi, T.8
Hirasawa, A.9
Takahashi, S.10
Izaike, Y.11
Tsujimoto, G.12
Hashizume, K.13
-
135
-
-
33749425678
-
Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis
-
Li, R.W.; Meyer, M.J.; Van Tassell, C.P.; Sonstegard, T.S.; Connor, E.E.; Van Amburgh, M.E.; Boisclair, Y.R.; Capuco, A.V. Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis. Physiol. Genomics, 2006, 27(1), 42-53.
-
(2006)
Physiol. Genomics
, vol.27
, Issue.1
, pp. 42-53
-
-
Li, R.W.1
Meyer, M.J.2
Van Tassell, C.P.3
Sonstegard, T.S.4
Connor, E.E.5
Van Amburgh, M.E.6
Boisclair, Y.R.7
Capuco, A.V.8
-
136
-
-
33947382481
-
A gene coexpression network for bovine skeletal muscle inferred from microarray data
-
Reverter, A.; Hudson, N.J.; Wang, Y.; Tan, S.H.; Barris, W.; Byrne, K.A.; McWilliam, S.M.; Bottema, C.D.; Kister, A.; Greenwood, P.L.; Harper, G.S.; Lehnert, S.A.; Dalrymple, B.P. A gene coexpression network for bovine skeletal muscle inferred from microarray data. Physiol. Genomics, 2006, 28(1), 76-83.
-
(2006)
Physiol. Genomics
, vol.28
, Issue.1
, pp. 76-83
-
-
Reverter, A.1
Hudson, N.J.2
Wang, Y.3
Tan, S.H.4
Barris, W.5
Byrne, K.A.6
McWilliam, S.M.7
Bottema, C.D.8
Kister, A.9
Greenwood, P.L.10
Harper, G.S.11
Lehnert, S.A.12
Dalrymple, B.P.13
-
137
-
-
33947637713
-
Target genes of myostatin loss-of-function in muscles of late bovine fetuses
-
Cassar-Malek, I.; Passelaigue, F.; Bernard, C.; Leger, J.; Hocquette, J.F. Target genes of myostatin loss-of-function in muscles of late bovine fetuses. BMC Genomics, 2007, 8, 63.
-
(2007)
BMC Genomics
, vol.8
, pp. 63
-
-
Cassar-Malek, I.1
Passelaigue, F.2
Bernard, C.3
Leger, J.4
Hocquette, J.F.5
-
138
-
-
77953452452
-
Image analysis and data normalization procedures are crucial for microarray analyses
-
Kadanga, A.K.; Leroux, C.; Bonnet, M.; Chauvet, S.; Meunier, B.; Cassar-Malek, I.; Hocquette, J.F. Image analysis and data normalization procedures are crucial for microarray analyses. Gene Regul. Syst. Bio., 2008, 2, 107-112.
-
(2008)
Gene Regul. Syst. Bio.
, vol.2
, pp. 107-112
-
-
Kadanga, A.K.1
Leroux, C.2
Bonnet, M.3
Chauvet, S.4
Meunier, B.5
Cassar-Malek, I.6
Hocquette, J.F.7
-
139
-
-
60549110542
-
Gene expression patterns during intramuscular fat development in cattle
-
Wang, Y.H.; Bower, N.I.; Reverter, A.; Tan, S.H.; De Jager, N.; Wang, R.; McWilliam, S.M.; Cafe, L.M.; Greenwood, P.L.; Lehnert, S.A. Gene expression patterns during intramuscular fat development in cattle. J. Anim. Sci., 2009, 87(1), 119-130.
-
(2009)
J. Anim. Sci.
, vol.87
, Issue.1
, pp. 119-130
-
-
Wang, Y.H.1
Bower, N.I.2
Reverter, A.3
Tan, S.H.4
De Jager, N.5
Wang, R.6
McWilliam, S.M.7
Cafe, L.M.8
Greenwood, P.L.9
Lehnert, S.A.10
-
140
-
-
70449519266
-
Comparative proteomics and transcriptomics analyses of livers from two different Bos taurus breeds: Chianina and Holstein Friesian
-
Timperio, A.M.; D'Alessandro, A.; Pariset, L.; D'Amici, G.M.; Valentini, A.; Zolla, L. Comparative proteomics and transcriptomics analyses of livers from two different Bos taurus breeds: "Chianina and Holstein Friesian". J. Proteomics, 2009, 73(2), 309-322.
-
(2009)
J. Proteomics
, vol.73
, Issue.2
, pp. 309-322
-
-
Timperio, A.M.1
D'Alessandro, A.2
Pariset, L.3
D'Amici, G.M.4
Valentini, A.5
Zolla, L.6
-
141
-
-
70349143213
-
Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: Repercussions for innate and adaptive immunity
-
Morris, D.G.; Waters, S.M.; McCarthy, S.D.; Patton, J.; Earley, B.; Fitzpatrick, R.; Murphy, J.J.; Diskin, M.G.; Kenny, D.A.; Brass, A.; Wathes, D.C. Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity. Physiol. Genomics, 2009, 39(1), 28-37.
-
(2009)
Physiol. Genomics
, vol.39
, Issue.1
, pp. 28-37
-
-
Morris, D.G.1
Waters, S.M.2
McCarthy, S.D.3
Patton, J.4
Earley, B.5
Fitzpatrick, R.6
Murphy, J.J.7
Diskin, M.G.8
Kenny, D.A.9
Brass, A.10
Wathes, D.C.11
-
142
-
-
79551537507
-
Feasibility of a liver transcriptomics approach to assess bovine treatment with the prohormone dehydroepiandrosterone (DHEA)
-
Rijk, J.C.; Peijnenburg, A.A.; Hendriksen, P.J.; Van Hende, J.M.; Groot, M.J.; Nielen, M.W. Feasibility of a liver transcriptomics approach to assess bovine treatment with the prohormone dehydroepiandrosterone (DHEA). BMC Vet. Res., 2010, 6, 44.
-
(2010)
BMC Vet. Res.
, vol.6
, pp. 44
-
-
Rijk, J.C.1
Peijnenburg, A.A.2
Hendriksen, P.J.3
Van Hende, J.M.4
Groot, M.J.5
Nielen, M.W.6
-
143
-
-
78649753922
-
Negative energy balance and hepatic gene expression patterns in highyielding dairy cows during the early postpartum period: A global approach
-
McCarthy, S.D.; Waters, S.M.; Kenny, D.A.; Diskin, M.G.; Fitzpatrick, R.; Patton, J.; Wathes, D.C.; Morris, D.G. Negative energy balance and hepatic gene expression patterns in highyielding dairy cows during the early postpartum period: a global approach. Physiol. Genomics, 2010, 42A(3), 188-199.
-
(2010)
Physiol. Genomics
, vol.42 A
, Issue.3
, pp. 188-199
-
-
McCarthy, S.D.1
Waters, S.M.2
Kenny, D.A.3
Diskin, M.G.4
Fitzpatrick, R.5
Patton, J.6
Wathes, D.C.7
Morris, D.G.8
-
144
-
-
79954621853
-
Dietary supplementation of selenium in inorganic and organic forms differentially and commonly alters blood and liver selenium concentrations and liver gene expression profiles of growing beef heifers
-
Liao, S.F.; Brown, K.R.; Stromberg, A.J.; Burris, W.R.; Boling, J.A.; Matthews, J.C. Dietary supplementation of selenium in inorganic and organic forms differentially and commonly alters blood and liver selenium concentrations and liver gene expression profiles of growing beef heifers. Biol. Trace Elem. Res., 2011, 140(2), 151-169.
-
(2011)
Biol. Trace Elem. Res.
, vol.140
, Issue.2
, pp. 151-169
-
-
Liao, S.F.1
Brown, K.R.2
Stromberg, A.J.3
Burris, W.R.4
Boling, J.A.5
Matthews, J.C.6
-
145
-
-
77951267892
-
Effect of diet supplementation on the expression of bovine genes associated with Fatty Acid synthesis and metabolism
-
Joseph, S.J.; Robbins, K.R.; Pavan, E.; Pratt, S.L.; Duckett, S.K.; Rekaya, R. Effect of diet supplementation on the expression of bovine genes associated with Fatty Acid synthesis and metabolism. Bioinform. Biol. Insights., 2010, 4, 19-31.
-
(2010)
Bioinform. Biol. Insights.
, vol.4
, pp. 19-31
-
-
Joseph, S.J.1
Robbins, K.R.2
Pavan, E.3
Pratt, S.L.4
Duckett, S.K.5
Rekaya, R.6
-
146
-
-
78649357765
-
Omega-6 fat supplementation alters lipogenic gene expression in bovine subcutaneous adipose tissue
-
Joseph, S.J.; Pratt, S.L.; Pavan, E.; Rekaya, R.; Duckett, S.K. Omega-6 fat supplementation alters lipogenic gene expression in bovine subcutaneous adipose tissue. Gene Regul. Syst. Bio., 2010, 4, 91-101.
-
(2010)
Gene Regul. Syst. Bio.
, vol.4
, pp. 91-101
-
-
Joseph, S.J.1
Pratt, S.L.2
Pavan, E.3
Rekaya, R.4
Duckett, S.K.5
-
147
-
-
78149252001
-
Altered gene expression in human adipose stem cells cultured with fetal bovine serum compared to human supplements
-
Bieback, K.; Ha, V.A.; Hecker, A.; Grassl, M.; Kinzebach, S.; Solz, H.; Sticht, C.; Kluter, H.; Bugert, P. Altered gene expression in human adipose stem cells cultured with fetal bovine serum compared to human supplements. Tissue Eng. Part A, 2010, 16(11), 3467-3484.
-
(2010)
Tissue Eng. Part A
, vol.16
, Issue.11
, pp. 3467-3484
-
-
Bieback, K.1
Ha, V.A.2
Hecker, A.3
Grassl, M.4
Kinzebach, S.5
Solz, H.6
Sticht, C.7
Kluter, H.8
Bugert, P.9
-
148
-
-
77949309025
-
Microarray analysis of gene expression profiles in the bovine mammary gland during lactation
-
Hou, X.; Li, Q.; Huang, T. Microarray analysis of gene expression profiles in the bovine mammary gland during lactation. Sci. China Life Sci., 2010, 53(2), 248-256.
-
(2010)
Sci. China Life Sci.
, vol.53
, Issue.2
, pp. 248-256
-
-
Hou, X.1
Li, Q.2
Huang, T.3
-
149
-
-
77949424010
-
Enhanced mitochondrial complex gene function and reduced liver size may mediate improved feed efficiency of beef cattle during compensatory growth
-
Connor, E.E.; Kahl, S.; Elsasser, T.H.; Parker, J.S.; Li, R.W.; Van Tassell, C.P.; Baldwin, R.L.t.; Barao, S.M. Enhanced mitochondrial complex gene function and reduced liver size may mediate improved feed efficiency of beef cattle during compensatory growth. Funct. Integr. Genomics, 2010, 10(1), 39-51.
-
(2010)
Funct. Integr. Genomics
, vol.10
, Issue.1
, pp. 39-51
-
-
Connor, E.E.1
Kahl, S.2
Elsasser, T.H.3
Parker, J.S.4
Li, R.W.5
Van Tassell, C.P.6
Baldwin, R.L.T.7
Barao, S.M.8
-
150
-
-
77349121409
-
Transcriptomic profiling of bovine IVF embryos revealed candidate genes and pathways involved in early embryonic development
-
Huang, W.; Yandell, B.S.; Khatib, H. Transcriptomic profiling of bovine IVF embryos revealed candidate genes and pathways involved in early embryonic development. BMC Genomics, 2010, 11, 23.
-
(2010)
BMC Genomics
, vol.11
, pp. 23
-
-
Huang, W.1
Yandell, B.S.2
Khatib, H.3
-
151
-
-
78650140999
-
Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq
-
Huang, W.; Khatib, H. Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq. BMC Genomics, 2010, 11, 711.
-
(2010)
BMC Genomics
, vol.11
, pp. 711
-
-
Huang, W.1
Khatib, H.2
-
152
-
-
78650970907
-
SNP discovery in the bovine milk transcriptome using RNA-Seq technology
-
Canovas, A.; Rincon, G.; Islas-Trejo, A.; Wickramasinghe, S.; Medrano, J.F. SNP discovery in the bovine milk transcriptome using RNA-Seq technology. Mamm. Genome, 2010, 21(11-12), 592-598.
-
(2010)
Mamm. Genome
, vol.21
, Issue.11-12
, pp. 592-598
-
-
Canovas, A.1
Rincon, G.2
Islas-Trejo, A.3
Wickramasinghe, S.4
Medrano, J.F.5
-
153
-
-
84863393213
-
Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle
-
Li, R.W.; Rinaldi, M.; Capuco, A.V. Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle. Vet. Res., 2011, 42(1), 114.
-
(2011)
Vet. Res.
, vol.42
, Issue.1
, pp. 114
-
-
Li, R.W.1
Rinaldi, M.2
Capuco, A.V.3
-
154
-
-
80052779691
-
Indistinguishable transcriptional profiles between in vitro-and in vivo-produced bovine fetuses
-
Jiang, L.; Marjani, S.L.; Bertolini, M.; Anderson, G.B.; Yang, X.; Tian, X.C. Indistinguishable transcriptional profiles between in vitro-and in vivo-produced bovine fetuses. Mol. Reprod. Dev., 2011, 78(9), 642-650.
-
(2011)
Mol. Reprod. Dev.
, vol.78
, Issue.9
, pp. 642-650
-
-
Jiang, L.1
Marjani, S.L.2
Bertolini, M.3
Anderson, G.B.4
Yang, X.5
Tian, X.C.6
-
155
-
-
80052743566
-
Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake
-
Chen, Y.; Gondro, C.; Quinn, K.; Herd, R.M.; Parnell, P.F.; Vanselow, B. Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake. Anim. Genet., 2011, 42(5), 475-490.
-
(2011)
Anim. Genet.
, vol.42
, Issue.5
, pp. 475-490
-
-
Chen, Y.1
Gondro, C.2
Quinn, K.3
Herd, R.M.4
Parnell, P.F.5
Vanselow, B.6
-
156
-
-
84863898333
-
Gene Expression Differences in Oocytes Derived From Adult and Prepubertal Japanese Black Cattle during In Vitro Maturation
-
Dorji; Ohkubo, Y.; Miyoshi, K.; Yoshida, M. Gene Expression Differences in Oocytes Derived From Adult and Prepubertal Japanese Black Cattle during In Vitro Maturation. Reprod. Domest. Anim., 2011.
-
(2011)
Reprod. Domest. Anim.
-
-
Dorji, O.Y.1
Miyoshi, K.2
Yoshida, M.3
-
157
-
-
80053894157
-
Microarray analysis of differentially expressed microRNAs in non-regressed and regressed bovine corpus luteum tissue; microRNA-378 may suppress luteal cell apoptosis by targeting the interferon gamma receptor 1 gene
-
Ma, T.; Jiang, H.; Gao, Y.; Zhao, Y.; Dai, L.; Xiong, Q.; Xu, Y.; Zhao, Z.; Zhang, J. Microarray analysis of differentially expressed microRNAs in non-regressed and regressed bovine corpus luteum tissue; microRNA-378 may suppress luteal cell apoptosis by targeting the interferon gamma receptor 1 gene. J. Appl. Genet., 2011, 52(4), 481-486.
-
(2011)
J. Appl. Genet.
, vol.52
, Issue.4
, pp. 481-486
-
-
Ma, T.1
Jiang, H.2
Gao, Y.3
Zhao, Y.4
Dai, L.5
Xiong, Q.6
Xu, Y.7
Zhao, Z.8
Zhang, J.9
-
158
-
-
79955552587
-
Transcriptome profiling of bovine milk oligosaccharide metabolism genes using RNAsequencing
-
Wickramasinghe, S.; Hua, S.; Rincon, G.; Islas-Trejo, A.; German, J.B.; Lebrilla, C.B.; Medrano, J.F. Transcriptome profiling of bovine milk oligosaccharide metabolism genes using RNAsequencing. PloS One, 2011, 6(4), e18895.
-
(2011)
PloS One
, vol.6
, Issue.4
-
-
Wickramasinghe, S.1
Hua, S.2
Rincon, G.3
Islas-Trejo, A.4
German, J.B.5
Lebrilla, C.B.6
Medrano, J.F.7
-
159
-
-
84882638296
-
Gene expression in the arcuate nucleus of heifers is affected by controlled intake of high-and low-concentrate diets
-
Allen, C.C.; Alves, B.R.; Li, X.; Tedeschi, L.O.; Zhou, H.; Paschal, J.C.; Riggs, P.K.; Braga-Neto, U.M.; Keisler, D.H.; Williams, G.L.; Amstalden, M. Gene expression in the arcuate nucleus of heifers is affected by controlled intake of high-and low-concentrate diets. J. Anim. Sci., 2012.
-
(2012)
J. Anim. Sci.
-
-
Allen, C.C.1
Alves, B.R.2
Li, X.3
Tedeschi, L.O.4
Zhou, H.5
Paschal, J.C.6
Riggs, P.K.7
Braga-Neto, U.M.8
Keisler, D.H.9
Williams, G.L.10
Amstalden, M.11
-
160
-
-
84855998082
-
Endometrial gene expression during early pregnancy differs between fertile and subfertile dairy cow strains
-
Walker, C.G.; Littlejohn, M.D.; Mitchell, M.D.; Roche, J.R.; Meier, S. Endometrial gene expression during early pregnancy differs between fertile and subfertile dairy cow strains. Physiol. Genomics, 2012, 44(1), 47-58.
-
(2012)
Physiol. Genomics
, vol.44
, Issue.1
, pp. 47-58
-
-
Walker, C.G.1
Littlejohn, M.D.2
Mitchell, M.D.3
Roche, J.R.4
Meier, S.5
-
161
-
-
84855651228
-
Gene expression profiling of bovine peripartal placentomes: Detection of molecular pathways potentially involved in the release of foetal membranes
-
Streyl, D.; Kenngott, R.; Herbach, N.; Wanke, R.; Blum, H.; Sinowatz, F.; Wolf, E.; Zerbe, H.; Bauersachs, S. Gene expression profiling of bovine peripartal placentomes: detection of molecular pathways potentially involved in the release of foetal membranes. Reproduction, 2012, 143(1), 85-105.
-
(2012)
Reproduction
, vol.143
, Issue.1
, pp. 85-105
-
-
Streyl, D.1
Kenngott, R.2
Herbach, N.3
Wanke, R.4
Blum, H.5
Sinowatz, F.6
Wolf, E.7
Zerbe, H.8
Bauersachs, S.9
-
162
-
-
84861040160
-
Muscle transcriptomic analyses in Angus cattle with divergent tenderness
-
Zhao, C.; Tian, F.; Yu, Y.; Luo, J.; Hu, Q.; Bequette, B.J.; Baldwin Vi, R.L.; Liu, G.; Zan, L.; Scott Updike, M.; Song, J. Muscle transcriptomic analyses in Angus cattle with divergent tenderness. Mol. Biol. Rep., 2012, 39(4), 4185-4193.
-
(2012)
Mol. Biol. Rep.
, vol.39
, Issue.4
, pp. 4185-4193
-
-
Zhao, C.1
Tian, F.2
Yu, Y.3
Luo, J.4
Hu, Q.5
Bequette, B.J.6
Baldwin Vi, R.L.7
Liu, G.8
Zan, L.9
Scott Updike, M.10
Song, J.11
-
163
-
-
84855400916
-
Transcriptome analysis of subcutaneous adipose tissues in beef cattle using 3' digital gene expression-tag profiling
-
Jin, W.; Olson, E.N.; Moore, S.S.; Basarab, J.A.; Basu, U.; Guan, L.L. Transcriptome analysis of subcutaneous adipose tissues in beef cattle using 3' digital gene expression-tag profiling. J. Anim. Sci., 2012, 90(1), 171-183.
-
(2012)
J. Anim. Sci.
, vol.90
, Issue.1
, pp. 171-183
-
-
Jin, W.1
Olson, E.N.2
Moore, S.S.3
Basarab, J.A.4
Basu, U.5
Guan, L.L.6
-
164
-
-
84860247159
-
Level of nutrient intake affects mammary gland gene expression profiles in preweaned Holstein heifers
-
Piantoni, P.; Daniels, K.M.; Everts, R.E.; Rodriguez-Zas, S.L.; Lewin, H.A.; Hurley, W.L.; Akers, R.M.; Loor, J.J. Level of nutrient intake affects mammary gland gene expression profiles in preweaned Holstein heifers. J. Dairy Sci., 2012, 95(5), 2550-2561.
-
(2012)
J. Dairy Sci.
, vol.95
, Issue.5
, pp. 2550-2561
-
-
Piantoni, P.1
Daniels, K.M.2
Everts, R.E.3
Rodriguez-Zas, S.L.4
Lewin, H.A.5
Hurley, W.L.6
Akers, R.M.7
Loor, J.J.8
-
165
-
-
84858437977
-
Cytoskeleton remodeling and alterations in smooth muscle contractility in the bovine jejunum during nematode infection
-
Li, R.W.; Schroeder, S.G. Cytoskeleton remodeling and alterations in smooth muscle contractility in the bovine jejunum during nematode infection. Funct. Integr. Genomics, 2012, 12(1), 35-44.
-
(2012)
Funct. Integr. Genomics
, vol.12
, Issue.1
, pp. 35-44
-
-
Li, R.W.1
Schroeder, S.G.2
-
166
-
-
84863888585
-
Conceptus-Endometrium Crosstalk During Maternal Recognition of Pregnancy in Cattle
-
Mamo, S.; Mehta, J.P.; Forde, N.; McGettigan, P.; Lonergan, P. Conceptus-Endometrium Crosstalk During Maternal Recognition of Pregnancy in Cattle. Biol. Reprod., 2012.
-
(2012)
Biol. Reprod.
-
-
Mamo, S.1
Mehta, J.P.2
Forde, N.3
McGettigan, P.4
Lonergan, P.5
-
167
-
-
84858958588
-
RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo-and in vitro-derived bovine blastocysts
-
Driver, A.M.; Penagaricano, F.; Huang, W.; Ahmad, K.R.; Hackbart, K.S.; Witlbank, M.C.; Khatib, H. RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo-and in vitro-derived bovine blastocysts. BMC Genomics, 2012, 13(1), 118.
-
(2012)
BMC Genomics
, vol.13
, Issue.1
, pp. 118
-
-
Driver, A.M.1
Penagaricano, F.2
Huang, W.3
Ahmad, K.R.4
Hackbart, K.S.5
Witlbank, M.C.6
Khatib, H.7
-
168
-
-
84856092747
-
Characterization and comparison of the leukocyte transcriptomes of three cattle breeds
-
Huang, W.; Nadeem, A.; Zhang, B.; Babar, M.; Soller, M.; Khatib, H. Characterization and comparison of the leukocyte transcriptomes of three cattle breeds. PloS One, 2012, 7(1), e30244.
-
(2012)
PloS One
, vol.7
, Issue.1
-
-
Huang, W.1
Nadeem, A.2
Zhang, B.3
Babar, M.4
Soller, M.5
Khatib, H.6
-
169
-
-
84855779542
-
Perturbation dynamics of the rumen microbiota in response to exogenous butyrate
-
Li, R.W.; Wu, S.; Baldwin, R.L.t.; Li, W.; Li, C. Perturbation dynamics of the rumen microbiota in response to exogenous butyrate. PloS One, 2012, 7(1), e29392.
-
(2012)
PloS One
, vol.7
, Issue.1
-
-
Li, R.W.1
Wu, S.2
Baldwin, R.L.T.3
Li, W.4
Li, C.5
|