Transcriptional profiling of skeletal muscle tissue from two breeds of cattle

Mammalian Genome

Volumn 16, Issue 3, 2005, Pages 201-210

  Wang, Yong Hong ^a   Byrne, Keren A ^a   Reverter, Antonio ^a   Harper, Gregory S ^a   Taniguchi, Masaaki ^b   McWilliam, Sean M ^a   Mannen, Hideyuki ^b   Oyama, Kenji ^b   Lehnert, Sigrid A ^a  

^a CSIRO   (Australia)

^b KOBE UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; UNSATURATED FATTY ACID;

ADIPOSE TISSUE; ANIMAL TISSUE; ARTICLE; BIOACCUMULATION; BREED DIFFERENCE; CATTLE; CONTROLLED STUDY; DNA MICROARRAY; FATTY ACID SYNTHESIS; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENETIC ASSOCIATION; GENETIC SIMILARITY; GENETIC TRANSCRIPTION; LIPID METABOLISM; LIPOGENESIS; LONGISSIMUS DORSI MUSCLE; MUSCLE TISSUE; NONHUMAN; NUCLEOTIDE SEQUENCE; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SKELETAL MUSCLE; SPECIES COMPARISON; STRAIN DIFFERENCE;

ANIMALS; BIOPSY; CATTLE; GENE EXPRESSION PROFILING; MALE; MOLECULAR SEQUENCE DATA; MUSCLE PROTEINS; MUSCLE, SKELETAL; POLYMERASE CHAIN REACTION;

EID: 17644401370     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00335-004-2419-8     Document Type: Article

References (39)

1. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410
2. L Andersson M Georges 2004 Domestic animal genomics: deciphering the genetics of complex traits Nat Rev Genet 5 202
3. W Barendse R Bunch M Thomas S Armitage S Baud 2004 The TG5 thyroglobulin gene test for a marbling quantitative trait loci evaluated in feedlot cattle Aust J Exp Agric 44 669 674
4. DA Benson I Karsch-Mizrachi DJ Lipman J Ostell BA Rapp 2002 GenBank Nucleic Acids Res 30 17 20
5. T Börchers F Spener 1994 Fatty acid binding proteins D Hoekstra Current Topics in Membranes, Vol. 40 Academic Press San Diego 261 294
6. MS Brown JL Goldstein 1997 The SREBP pathway: regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor Cell 89 331 340
7. P Chomczynski N Sacchi 1987 Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal Biochem 162 156 159
8. P Cohen M Miyazaki ND Socci A Hagge-Greenberg W Liedtke 2002 Role for stearoyl-CoA desaturase-1 in leptin-mediated weight loss Science 297 240 243
9. JF Glatz MM York DP Cistola GJ van der Vusse 1993 Cytoplasmic fatty acid binding protein: significance for intracellular transport of fatty acids and putative role on signal transduction pathways Prostaglandins Leukot Essent Fatty Acids 48 33 41
10. B Gustafson MM Jack SW Cushman U Smith 2003 Adiponectin gene activation by thiazolidinediones requires PPARγ2, but not C/EBPα - evidence for differential regulation of the aP2 and adiponectin genes Biochem Biophys Res Commun 308 933 939
11. RL Hood CE Allen 1978 Lipogenesis in isolated intramuscular adipose tissue from four bovine muscles J Anim Sci 46 1626 1633
12. Iseli C, Jongeneel CV, Bucher P (1999) ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc Int Conf Intell Syst Mol Biol, 138-148
13. N Kaminski JD Allard JF Pittet F Zuo MJ Griffiths 2000 Global analysis of gene expression in pulmonary fibrosis reveals distinct programs regulating lung inflammation and fibrosis Proc Natl Acad Sci USA 97 1778 1783
14. HJ Kim M Miyazaki WC Man JM Ntambi 2002 Sterol regulatory element-binding proteins (SREBPs) as regulators of lipid metabolism: polyunsaturated fatty acids oppose cholesterol-mediated induction of SREBP-1 maturation Ann NY Acad Sci 967 34 42
15. A Lehnert YH Wang KA Byrne 2004 Development and application of a bovine cDNA microarray for expression profiling of muscle and adipose tissue Aust J Exp Agric, 44 1127 1133
16. GS Martin DK Lunt KG Britain SB Smith 1999 Postnatal development of stearoyl coenzyme A desaturase gene expression and adiposity in bovine subcutaneous adipose tissue J Anim Sci 77 630 636
17. M Matsuzaki S Takizawa M Ogama 1997 Plasma insulin, metabolite concentrations, and carcass characteristics of Japanese Black, Japanese Brown and Holstein steera J Anim Sci 75 3287 3293
18. GJ McLachlan D Peel KE Basford P Adams 1999 The EMMIX software for the fitting of mixtures of normal and t-components J Stat Software 4: 2 Available at http://www.jstatsoft.org/v04/i02 (accessed November 15, 2002)
19. WG Moody RG Cassens 1968 Histochemical differentiation of red and white muscle fibers J Anim Sci 27 961 968
20. PY Muller H Janovjak AR Miserez Z Dobbie 2002 Processing of gene expression data generated by quantitative real-time RT-PCR Biotechniques 32 1372 1374, 1376, 1378-1379
21. T Nishimura A Hattori K Takahashi 1999 structural changes in intramuscular connective tissue during the fattening of Japanese black cattle: effect of marbling on beef tenderization J Anim Sci 77 93 104
22. JM Ntambi 1999 Regulation of stearoyl-CoA desaturase by polyunsaturated fatty acids and cholesterol J Lipid Res 40 1549 1558
23. JM Ntambi SA Buhrow KH Kaestner RJ Christy E Sibley 1988 Differentiation-induced gene expression in 3T3-L1 preadipocytes. Characterization of a differentially expressed gene encoding stearoyl-CoA desaturase J Biol Chem 263 17291 17300
24. A Oka F Iwaki T Dohgo S Ohtagaki M Noda 2002 Genetic effects on fatty acid composition of carcass fat of Japanese Black Wagyu steers J Anim Sci 80 1005 1011
25. RB Rawson 2003 Control of lipid metabolism by regulated intramembrane proteolysis of sterol regulatory element binding proteins (SREBPs) Biochem Soc Symp 70 221 231
26. A Reverter KA Byrne HL Brace YH Wang B Dalrymple 2003 A mixture model-based cluster analysis of cDNA microarray gene expression data on Brahman and Brahman composite steers fed high, medium and low quality diets J Anim Sci 81 1900 1910
27. R Rump C Buhlmann T Borchers F Spener 1996 Differentiation-dependent expression of heart type fatty acid-binding protein in C2C12 muscle cells Eur J Cell Biol 69 135 142
28. SB Smith JD Crouse 1984 Relative contributions of acetate, lactate and glucose to lipogenesis in bovine intramuscular and subcutaneous adipose tissue J Nutr 114 792 800
29. SB Smith A Yang TW Larsen RK Tume 1998 Positional analysis of triacylglycerols from bovine adipose tissue lipids varying in degree of unsaturation Lipids 33 197 207
30. SP Suchyta S Sipkovsky R Kruska A Jeffers A McNulty 2003 Development and testing of a high-density cDNA microarray resource for cattle Physiol Genomics 15 158 164
31. M Taniguchi H Mannen Y Shimakura A Oka H Watanabe 2003 Differences in stearoyl-CoA desaturase mRNA levels between Japanese Black and Holstein cattle Livest Prod Sci 87 215 220
32. J Vandesompele K De Preter F Pattyn B Poppe N VanRoy 2002 Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biol 3 7 1 11
33. JH Veerkamp HT van Moerkerk 1993 Fatty acid-binding protein and its relation to fatty acid oxidation Mol Cell Biochem 123 101 106
34. YH Wang SM McWilliam W Barendse SR Kata JF Womack 2001 Mapping of 12 bovine ribosomal protein genes using a bovine radiation hybrid panel Anim Genet 32 269 273
35. X Wang W Carre H Zhou SJ Lamont LA Cogburn 2004 Duplicated Spot 14 genes in the chicken: characterization and identification of polymorphisms associated with abdominal fat traits Gene 332 79 88
36. A Yang TW Larsen SB Smith RK Tume 1999 Delta9 desaturase activity in bovine subcutaneous adipose tissue of different fatty acid composition Lipids 34 971 978
37. PM Yen 2001 Physiological and molecular basis of thyroid hormone action Physiol Rev 81 1097 1142
38. R Zechner 1997 The tissue-specific expression of lipoprotein lipase: implications for energy and lipoprotein metabolism Curr Opin Lipidol 8 77 88
39. M Zembayashi K Nishimura DK Lunt SB Smith 1995 Effect of breed type and sex on the fatty acid composition of subcutaneous and intramuscular lipids of finishing steers and heifers J Anim Sci 73 3325 3332