Gene expression patterns during intramuscular fat development in cattle

Journal of Animal Science

Volumn 87, Issue 1, 2009, Pages 119-130

  Wang, Y H ^a,b   Bower, N I ^a,b,e   Reverter, A ^a,b   Tan, S H ^a,b,f   De Jager, N ^a,c   Wang, R ^a,g   McWilliam, S M ^a   Cafe, L M ^b,d   Greenwood, P L ^b,d   Lehnert, S A ^a,b  

^a CSIRO   (Australia)

^b Cooperative Research Centre ^*  (Australia)

^c UNIVERSITY OF QUEENSLAND   (Australia)

^d UNIVERSITY OF NEW ENGLAND   (Australia)

^e UNIVERSITY OF ST ANDREWS   (United Kingdom)

^f ROYAL BRISBANE AND WOMEN'S HOSPITAL   (Australia)

^g INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Cattle; Gene expression; Intramuscular fat; Marbling; Microarray; Muscle

Indexed keywords

ANIMALIA; BOS;

ADIPOGENESIS; ADIPOSE TISSUE; ANIMAL; ARTICLE; CATTLE; DNA MICROARRAY; FEMALE; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LIPOGENESIS; METABOLISM; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SKELETAL MUSCLE;

ADIPOGENESIS; ADIPOSE TISSUE; ANIMALS; CATTLE; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES; LIPOGENESIS; MUSCLE, SKELETAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

EID: 60549110542     PISSN: 00218812     EISSN: 15253163     Source Type: Journal    
DOI: 10.2527/jas.2008-1082     Document Type: Article

References (29)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Cafe, L. M., D. W. Hennessy, H. Hearnshaw, S. G. Morris, and P. L. Greenwood. 2006. Influences of nutrition during pregnancy and lactation on birth weights and growth to weaning of calves sired by Piedmontese or Wagyu bulls. Aust. J. Exp. Agric. 46:245-255.
3. Caserta, F., T. Tchkonia, V. N. Civelek, M. Prentki, N. F. Brown, J. D. McGarry, R. A. Forse, B. E. Corkey, J. A. Hamilton, and J. L. Kirkland. 2001. Fat depot origin affects fatty acid handling in cultured rat and human preadipocytes. Am. J. Physiol. Endocrinol. Metab. 280:E238-E247.
4. Clarke, S. L., C. E. Robinson, and J. M. Gimble. 1997. CAAT/ enhancer binding proteins directly modulate transcription from the peroxisome proliferator-activated receptor gamma 2 promoter. Biochem. Biophys. Res. Commun. 240:99-103.
5. Gardner, G. E., D. L. Hopkins, P. L. Greenwood, M. A. Cake, M. D. Boyce, and D. W. Pethick. 2007. Sheep genotype, age and muscle type affect the expression of metabolic enzyme markers. Aust. J. Exp. Agric 47:1180-1189.
6. Greenwood, P. L., L. M. Cafe, H. Hearnshaw, D. W. Hennessy, J. M. Thompson, and S. G. Morris. 2006. Long-term consequences of birth weight and growth to weaning for carcass, yield and beef quality characteristics of Piedmontese- and Wagyu-sired cattle. Aust. J. Exp. Agric. 46:257-269.
7. Greenwood, P. L., S. Harden, and D. L. Hopkins. 2007. Myofibre characteristics of ovine longissimus and semitendinosus muscles are influenced by sire breed, gender, rearing type, age and carcass weight. Aust. J. Exp. Agric 47:1137-1146.
8. Hovenier, R., E. W. Brascamp, E. Kanis, J. H. van der Werf, and A. P. Wassenberg. 1993. Economic values of optimum traits: The example of meat quality in pigs. J. Anim. Sci. 71:1429-1433.
9. Kirkland, J. L., and D. E. Dobson. 1997. Preadipocyte function and aging: links between age-related changes in cell dynamics and altered fat tissue function. J. Am. Geriatr. Soc. 45:959-967.
10. Lehnert, S. A., A. Reverter, K. A. Byrne, Y. Wang, G. S. Nattrass, N. J. Hudson, and P. L. Greenwood. 2007. Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds. BMC Dev. Biol. 7:95.
11. Lehnert, S. A., Y. H. Wang, and K. A. Byrne. 2004. Development and application of a bovine cDNA microarray for expression profiling of muscle and adipose tissue. Aust. J. Exp. Agric. 44:1127-1133.
12. McLachlan, G. J., R. W. Bean, and L. B. Jones. 2006. A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays. Bioinformatics 22:1608-1615.
13. Moody, W. G., and R. G. Cassens. 1968. Histochemical differentiation of red and white muscle fibers. J. Anim. Sci. 27:961-968.
14. Muller, P. Y., H. Janovjak, A. R. Miserez, and Z. Dobbie. 2002. Processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques 32:1372-1379.
15. Nishimura, T., A. Hattori, and K. Takahashi. 1999. Structural changes in intramuscular connective tissue during the fattening of Japanese black cattle: Effect of marbling on beef tenderization. J. Anim. Sci. 77:93-104.
16. Perry, D., W. R. Shorthose, D. M. Ferguson, and J. M. Thompson. 2001. Methods used in the CRC program for the determination of carcass yield and beef quality. Aust. J. Exp. Agric. 41:953-957.
17. Pethick, D. W., W. Barendse, J. F. Hocquette, J. M. Thompson, and Y. H. Wang. 2007. Regulation of marbling and body composition-Growth and development, gene markers and nutritional biochemistry. Pages 75-88 in Energy and Protein Metabolism. No. 124. I. Ortiques-Marty, ed. Wageningen Academic Publishers, Wageningen, the Netherlands.
18. Pethick, D. W., G. S. Harper, and V. H. Oddy. 2004. Growth, development and nutritional manipulation of marbling in cattle: A review. Aust. J. Exp. Agric. 44:705-715.
19. Ramakers, C., J. M. Ruijter, R. H. Deprez, and A. F. Moorman. 2003. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci. Lett. 339:62-66.
20. Reverter, A., W. Barris, S. McWilliam, K. A. Byrne, Y. H. Wang, S. H. Tan, N. Hudson, and B. P. Dalrymple. 2005. Validation of alternative methods of data normalization in gene co-expression studies. Bioinformatics 21:1112-1120.
21. Reverter, A., Y. H. Wang, K. A. Byrne, S. H. Tan, G. S. Harper, and S. A. Lehnert. 2004. Joint analysis of multiple cDNA microarray studies via multivariate mixed models applied to genetic improvement of beef cattle. J. Anim. Sci. 82:3430-3439.
22. Ross, S. E., N. Hemati, K. A. Longo, C N. Bennett, P. C. Lucas, R. L. Erickson, and O. A. MacDougald. 2000. Inhibition of adipogenesis by Wut signaling. Science 289:950-953.
23. Tahara, K., H. Aso, T. Yamasaki, M. T. Rose, A. Takasuga, Y. Sugimoto, T. Yarnaguchi, K. Tahara, and S. Takano. 2004. Cloning and expression of type XII collagen isoforms during bovine adipogenesis. Differentiation 72:113-122.
24. Tan, S. H., A. Reverter, Y. H. Wang, K. Byrne, S. McWilliam, and S. Lehnert. 2006. Gene expression profiling of bovine in vitro adipogenesis using a cDNA microarray. Funct. Integr. Genomics 6:235-249.
25. Tran, P. H., D. A. Peiffer, Y. Shin, L. M. Meek, J. P. Brody, and K. W. Y. Cho. 2002. Microarray optimisations: Increasing spot accuracy and automated identification of true microarray signals. Nucleic Acids Res. 30:e54.
26. Vandesompele, J., K. De Prêter, F. Pattyn, B. Poppe, N. Van Roy, A. De Paepe, and F. Speleman. 2002. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3:RE-SEARCH0034.
27. Wang, Y. H., K. A. Byrne, A. Reverter, G. S. Harper, M. Taniguchi, S. M. McWilliam, H. Mannen, K. Oyama, and S. A. Lehnert. 2005. Transcriptional profiling of skeletal muscle tissue from two breeds of cattle. Mamm. Genome 16:201-210.
28. Warner, R. D., D. W. Pethick, P. L. Greenwood, E. N. Ponnampalam, R. G. Banks, and D. L. Hopkins. 2007. Unraveling the complex interactions between genetics, animal age and nutrition as they impact on tissue deposition, muscle characteristics and quality of Australian sheep meat. Aust. J. Exp. Agric. 47:1229-1238.
29. Wu, Z., Y. Xie, N. L. Bucher, and S. R. Farmer. 1995. Conditional ectopic expression of C/EBP beta in NIH-3T3 cells induces PPAR gamma and stimulates adipogenesis. Genes Dev. 9:2350-2363.