-
1
-
-
0022493181
-
Fat synthesis in adipose tissue. An examination of stoichiometric constraints
-
1147204, 3800960
-
Fell D, Small J. Fat synthesis in adipose tissue. An examination of stoichiometric constraints. Biochem J 1986, 238(3):781. 1147204, 3800960.
-
(1986)
Biochem J
, vol.238
, Issue.3
, pp. 781
-
-
Fell, D.1
Small, J.2
-
2
-
-
0026516223
-
Network analysis of intermediary metabolism using linear optimization. I. Development of mathematical formalism
-
10.1016/S0022-5193(05)80161-4, 1593896
-
Savinell J, Palsson B. Network analysis of intermediary metabolism using linear optimization. I. Development of mathematical formalism. J Theor Biol 1992, 154(4):421-454. 10.1016/S0022-5193(05)80161-4, 1593896.
-
(1992)
J Theor Biol
, vol.154
, Issue.4
, pp. 421-454
-
-
Savinell, J.1
Palsson, B.2
-
3
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
10.1016/j.ymben.2003.09.002, 14642354
-
Mahadevan R, Schilling C. The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metabolic engineering 2003, 5(4):264-276. 10.1016/j.ymben.2003.09.002, 14642354.
-
(2003)
Metabolic engineering
, vol.5
, Issue.4
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.2
-
4
-
-
4644220226
-
Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states
-
10.1101/gr.2546004, 515326, 15342562
-
Reed J, Palsson B. Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. Genome Research 2004, 14(9):1797. 10.1101/gr.2546004, 515326, 15342562.
-
(2004)
Genome Research
, vol.14
, Issue.9
, pp. 1797
-
-
Reed, J.1
Palsson, B.2
-
5
-
-
77952774546
-
Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery
-
Thiele I, Fleming R, Bordbar A, Schellenberger J, Palsson BO. Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery. Biophysical Journal 2010,
-
(2010)
Biophysical Journal
-
-
Thiele, I.1
Fleming, R.2
Bordbar, A.3
Schellenberger, J.4
Palsson, B.O.5
-
6
-
-
33747354689
-
The use of genome scale metabolic flux variability analysis for process feed formulation based on an investigation of the effects of the zwf mutation on antibiotic production in Streptomyces coelicolor
-
Bushell M, Sequeira S, Khannapho C, Zhao H, Chater K, Butler M, Kierzek A, Avignone-Rossa C. The use of genome scale metabolic flux variability analysis for process feed formulation based on an investigation of the effects of the zwf mutation on antibiotic production in Streptomyces coelicolor. Enzyme and Microbial Technology 2006, 39(6):1347-1353.
-
(2006)
Enzyme and Microbial Technology
, vol.39
, Issue.6
, pp. 1347-1353
-
-
Bushell, M.1
Sequeira, S.2
Khannapho, C.3
Zhao, H.4
Chater, K.5
Butler, M.6
Kierzek, A.7
Avignone-Rossa, C.8
-
7
-
-
29544436058
-
An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems
-
10.1016/j.ymben.2005.08.003, 16199194
-
Pharkya P, Maranas C. An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems. Metabolic engineering 2006, 8:1-13. 10.1016/j.ymben.2005.08.003, 16199194.
-
(2006)
Metabolic engineering
, vol.8
, pp. 1-13
-
-
Pharkya, P.1
Maranas, C.2
-
8
-
-
77950863401
-
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
-
10.1016/j.ymben.2009.10.003, 19840862
-
Feist A, Zielinski D, Orth J, Schellenberger J, Herrgard M, Palsson B. Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli. Metabolic Engineering 2009, 12:173-186. 10.1016/j.ymben.2009.10.003, 19840862.
-
(2009)
Metabolic Engineering
, vol.12
, pp. 173-186
-
-
Feist, A.1
Zielinski, D.2
Orth, J.3
Schellenberger, J.4
Herrgard, M.5
Palsson, B.6
-
9
-
-
0011382870
-
Glpk (gnu linear programming kit), version 4.42
-
Makhorin A. Glpk (gnu linear programming kit), version 4.42. , http://www.gnu.org/software/glpk/
-
-
-
Makhorin, A.1
-
10
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
-
10.1038/nprot.2007.99, 17406635
-
Becker S, Feist A, Mo M, Hannum G, Palsson B, Herrgard M. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat Protoc 2007, 2(3):727-738. 10.1038/nprot.2007.99, 17406635.
-
(2007)
Nat Protoc
, vol.2
, Issue.3
, pp. 727-738
-
-
Becker, S.1
Feist, A.2
Mo, M.3
Hannum, G.4
Palsson, B.5
Herrgard, M.6
-
11
-
-
34247094270
-
An interval approach for dealing with flux distributions and elementary modes activity patterns
-
10.1016/j.jtbi.2006.12.029, 17292923
-
Llaneras F, Pico J. An interval approach for dealing with flux distributions and elementary modes activity patterns. Journal of theoretical biology 2007, 246(2):290-308. 10.1016/j.jtbi.2006.12.029, 17292923.
-
(2007)
Journal of theoretical biology
, vol.246
, Issue.2
, pp. 290-308
-
-
Llaneras, F.1
Pico, J.2
-
12
-
-
0142092727
-
Reconstructing metabolic flux vectors from extreme pathways: defining the α-spectrum
-
10.1016/S0022-5193(03)00168-1, 12941590
-
Wiback S, Mahadevan R, Palsson B. Reconstructing metabolic flux vectors from extreme pathways: defining the α-spectrum. Journal of theoretical biology 2003, 224(3):313-324. 10.1016/S0022-5193(03)00168-1, 12941590.
-
(2003)
Journal of theoretical biology
, vol.224
, Issue.3
, pp. 313-324
-
-
Wiback, S.1
Mahadevan, R.2
Palsson, B.3
-
13
-
-
70349345898
-
Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima
-
10.1126/science.1174671, 2833182, 19762644
-
Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon A, Wooley J, Lesley S, Wilson I, Palsson B, Osterman A, Godzik A. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science 2009, 325(5947):1544. 10.1126/science.1174671, 2833182, 19762644.
-
(2009)
Science
, vol.325
, Issue.5947
, pp. 1544
-
-
Zhang, Y.1
Thiele, I.2
Weekes, D.3
Li, Z.4
Jaroszewski, L.5
Ginalski, K.6
Deacon, A.7
Wooley, J.8
Lesley, S.9
Wilson, I.10
Palsson, B.11
Osterman, A.12
Godzik, A.13
-
14
-
-
54449092307
-
A genome-scale metabolic reconstruction of Pseudomonas putida KT 2440: iJN 746 as a cell factory
-
10.1186/1752-0509-2-79, 2569920, 18793442
-
Nogales J, Palsson B, Thiele I. A genome-scale metabolic reconstruction of Pseudomonas putida KT 2440: iJN 746 as a cell factory. BMC Systems Biology 2008, 2:79. 10.1186/1752-0509-2-79, 2569920, 18793442.
-
(2008)
BMC Systems Biology
, vol.2
, pp. 79
-
-
Nogales, J.1
Palsson, B.2
Thiele, I.3
-
15
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist A, Henry C, Reed J, Krummenacker M, Joyce A, Karp P, Broadbelt L, Hatzimanikatis V, Palsson B. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Molecular systems biology 2007, 3.
-
(2007)
Molecular systems biology
, pp. 3
-
-
Feist, A.1
Henry, C.2
Reed, J.3
Krummenacker, M.4
Joyce, A.5
Karp, P.6
Broadbelt, L.7
Hatzimanikatis, V.8
Palsson, B.9
-
16
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
10.1073/pnas.0610772104, 1794290, 17267599
-
Duarte N, Becker S, Jamshidi N, Thiele I, Mo M, Vo T, Srivas R, Palsson B. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci 2007, 104(6):1777. 10.1073/pnas.0610772104, 1794290, 17267599.
-
(2007)
Proc Natl Acad Sci
, vol.104
, Issue.6
, pp. 1777
-
-
Duarte, N.1
Becker, S.2
Jamshidi, N.3
Thiele, I.4
Mo, M.5
Vo, T.6
Srivas, R.7
Palsson, B.8
-
17
-
-
63549148162
-
Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization
-
10.1371/journal.pcbi.1000312, 2648898, 19282977
-
Thiele I, Jamshidi N, Fleming RMT, Palsson B. Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization. PLoS Comput Biol 2009, 5(3):e1000312. 10.1371/journal.pcbi.1000312, 2648898, 19282977.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.3
-
-
Thiele, I.1
Jamshidi, N.2
Fleming, R.M.T.3
Palsson, B.4
|