-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
2
-
-
13444262395
-
The European Bioinformatics Institute's data resources: Towards systems biology
-
Brooksbank C, Cameron G, Thornton J (2005) The European Bioinformatics Institute's data resources: towards systems biology. Nucleic Acids Res 33: D46-D53
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Brooksbank, C.1
Cameron, G.2
Thornton, J.3
-
3
-
-
33644873676
-
LMPD: LIPID MAPS proteome database
-
Cotter D, Maer A, Guda C, Saunders B, Subramaniam S (2006) LMPD: LIPID MAPS proteome database. Nucleic Acids Res 34: D507-D510
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Cotter, D.1
Maer, A.2
Guda, C.3
Saunders, B.4
Subramaniam, S.5
-
4
-
-
4344670936
-
Bow ties, metabolism and disease
-
Csete M, Doyle J (2004) Bow ties, metabolism and disease. Trends Biotechnol 22: 446-450
-
(2004)
Trends Biotechnol
, vol.22
, pp. 446-450
-
-
Csete, M.1
Doyle, J.2
-
5
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BO (2007) Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci USA 104: 1777-1782
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
6
-
-
3843128481
-
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
Duarte NC, Herrgard MJ, Palsson BO (2004) Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res 14: 1298-1309
-
(2004)
Genome Res
, vol.14
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgard, M.J.2
Palsson, B.O.3
-
7
-
-
33644875050
-
The HUGO Gene Nomenclature Database, 2006 updates
-
Eyre TA, Ducluzeau F, Sneddon TP, Povey S, Bruford EA, Lush MJ (2006) The HUGO Gene Nomenclature Database, 2006 updates. Nucleic Acids Res 34: D319-D321
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Eyre, T.A.1
Ducluzeau, F.2
Sneddon, T.P.3
Povey, S.4
Bruford, E.A.5
Lush, M.J.6
-
8
-
-
20444419500
-
A comprehensive classification system for lipids
-
Fahy E, Subramaniam S, Brown HA, Glass CK, Merrill Jr AH, Murphy RC, Raetz CR, Russell DW, Seyama Y, Shaw W, Shimizu T, Spener F, van Meer G, VanNieuwenhze MS, White SH, Witztum JL, Dennis EA (2005) A comprehensive classification system for lipids. J Lipid Res 46: 839-861
-
(2005)
J Lipid Res
, vol.46
, pp. 839-861
-
-
Fahy, E.1
Subramaniam, S.2
Brown, H.A.3
Glass, C.K.4
Merrill Jr, A.H.5
Murphy, R.C.6
Raetz, C.R.7
Russell, D.W.8
Seyama, Y.9
Shaw, W.10
Shimizu, T.11
Spener, F.12
van Meer, G.13
VanNieuwenhze, M.S.14
White, S.H.15
Witztum, J.L.16
Dennis, E.A.17
-
9
-
-
0036081122
-
LIGAND: Database of chemical compounds and reactions in biological pathways
-
Goto S, Okuno Y, Hattori M, Nishioka T, Kanehisa M (2002) LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Res 30: 402-404
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 402-404
-
-
Goto, S.1
Okuno, Y.2
Hattori, M.3
Nishioka, T.4
Kanehisa, M.5
-
10
-
-
33750431077
-
Metabolomics as a functional genomic tool for understanding lipid dysfunction in diabetes, obesity and related disorders
-
Griffin JL, Nicholls AW (2006) Metabolomics as a functional genomic tool for understanding lipid dysfunction in diabetes, obesity and related disorders. Pharmacogenomics 7: 1095-1107
-
(2006)
Pharmacogenomics
, vol.7
, pp. 1095-1107
-
-
Griffin, J.L.1
Nicholls, A.W.2
-
11
-
-
13444266370
-
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
-
Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA (2005) Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res 33: D514-D517
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Hamosh, A.1
Scott, A.F.2
Amberger, J.S.3
Bocchini, C.A.4
McKusick, V.A.5
-
12
-
-
33846039019
-
-
Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K et al. (2007) Ensembl 2007. Nucleic Acids Res 35: D610-D617
-
Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K et al. (2007) Ensembl 2007. Nucleic Acids Res 35: D610-D617
-
-
-
-
13
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL (2000) The large-scale organization of metabolic networks. Nature 407: 651-654
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
14
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res 32: D277-D280
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
15
-
-
27244436714
-
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
-
Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahren D, Tsoka S, Darzentas N, Kunin V, Lopez-Bigas N (2005) Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res 33: 6083-6089
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6083-6089
-
-
Karp, P.D.1
Ouzounis, C.A.2
Moore-Kochlacs, C.3
Goldovsky, L.4
Kaipa, P.5
Ahren, D.6
Tsoka, S.7
Darzentas, N.8
Kunin, V.9
Lopez-Bigas, N.10
-
16
-
-
33751356224
-
Systems biology, metabolic modelling and metabolomics in drug discovery and development
-
Kell DB (2006) Systems biology, metabolic modelling and metabolomics in drug discovery and development. Drug Discov Today 11: 1085-1092
-
(2006)
Drug Discov Today
, vol.11
, pp. 1085-1092
-
-
Kell, D.B.1
-
17
-
-
7644238181
-
Biological robustness
-
Kitano H (2004) Biological robustness. Nat Rev Genet 5: 826-837
-
(2004)
Nat Rev Genet
, vol.5
, pp. 826-837
-
-
Kitano, H.1
-
18
-
-
23444439817
-
Using process diagrams for the graphical representation of biological networks
-
Kitano H, Funahashi A, Matsuoka Y, Oda K (2005) Using process diagrams for the graphical representation of biological networks. Nat Biotechnol 23: 961-966
-
(2005)
Nat Biotechnol
, vol.23
, pp. 961-966
-
-
Kitano, H.1
Funahashi, A.2
Matsuoka, Y.3
Oda, K.4
-
19
-
-
0141538249
-
Human cytochromes P450 associated with the phase 1 metabolism of drugs and other xenobiotics: A compilation of substrates and inhibitors of the CYP1, CYP2 and CYP3 families
-
Lewis DF (2003) Human cytochromes P450 associated with the phase 1 metabolism of drugs and other xenobiotics: a compilation of substrates and inhibitors of the CYP1, CYP2 and CYP3 families. Curr Med Chem 10: 1955-1972
-
(2003)
Curr Med Chem
, vol.10
, pp. 1955-1972
-
-
Lewis, D.F.1
-
20
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
Ma HW, Zeng AP (2003) Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 19: 270-277
-
(2003)
Bioinformatics
, vol.19
, pp. 270-277
-
-
Ma, H.W.1
Zeng, A.P.2
-
21
-
-
0042093610
-
The connectivity structure, giant strong component and centrality of metabolic networks
-
Ma HW, Zeng AP (2003) The connectivity structure, giant strong component and centrality of metabolic networks. Bioinformatics 19: 1423-1430
-
(2003)
Bioinformatics
, vol.19
, pp. 1423-1430
-
-
Ma, H.W.1
Zeng, A.P.2
-
22
-
-
4444234772
-
Decomposition of metabolic network based on the global connectivity structure of reaction graph
-
Ma HW, Zhao XM, Yuan YJ, Zeng AP (2004) Decomposition of metabolic network based on the global connectivity structure of reaction graph. Bioinformatics 20: 1870-1876
-
(2004)
Bioinformatics
, vol.20
, pp. 1870-1876
-
-
Ma, H.W.1
Zhao, X.M.2
Yuan, Y.J.3
Zeng, A.P.4
-
24
-
-
34548864752
-
Kinetic model of mitochondrial Krebs cycle: Unraveling the mechanism of salicylate hepatotoxic effects
-
Mogilevskaya E, Demin O, Goryanin I (2006) Kinetic model of mitochondrial Krebs cycle: unraveling the mechanism of salicylate hepatotoxic effects. J Biol Phys 32: 245-271
-
(2006)
J Biol Phys
, vol.32
, pp. 245-271
-
-
Mogilevskaya, E.1
Demin, O.2
Goryanin, I.3
-
25
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed JL, Vo TD, Schilling CH, Palsson BO (2003) An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol 4: R54
-
(2003)
Genome Biol
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
27
-
-
14844326483
-
Computational prediction of human metabolic pathways from the complete human genome
-
Romero P, Wagg J, Green ML, Kaiser D, Krummenacker M, Karp PD (2005) Computational prediction of human metabolic pathways from the complete human genome. Genome Biol 6: R2
-
(2005)
Genome Biol
, vol.6
-
-
Romero, P.1
Wagg, J.2
Green, M.L.3
Kaiser, D.4
Krummenacker, M.5
Karp, P.D.6
-
28
-
-
1842858905
-
GeneCards 2002: Towards a complete, object-oriented, human gene compendium
-
Safran M, Solomon I, Shmueli O, Lapidot M, Shen-Orr S, Adato A, Ben-Dor U, Esterman N, Rosen N, Peter I, Olender T, Chalifa-Caspi V, Lancet D (2002) GeneCards 2002: towards a complete, object-oriented, human gene compendium. Bioinformatics 18: 1542-1543
-
(2002)
Bioinformatics
, vol.18
, pp. 1542-1543
-
-
Safran, M.1
Solomon, I.2
Shmueli, O.3
Lapidot, M.4
Shen-Orr, S.5
Adato, A.6
Ben-Dor, U.7
Esterman, N.8
Rosen, N.9
Peter, I.10
Olender, T.11
Chalifa-Caspi, V.12
Lancet, D.13
-
29
-
-
33750480850
-
Metabolic profiling technologies for biomarker discovery in biomedicine and drug development
-
Schlotterbeck G, Ross A, Dieterle F, Senn H (2006) Metabolic profiling technologies for biomarker discovery in biomedicine and drug development. Pharmacogenomics 7: 1055-1075
-
(2006)
Pharmacogenomics
, vol.7
, pp. 1055-1075
-
-
Schlotterbeck, G.1
Ross, A.2
Dieterle, F.3
Senn, H.4
-
30
-
-
0347355284
-
Application of gas chromatographymass spectrometry for analysis of isoprostanes: Their role in cardiovascular disease
-
Schwedhelm E, Boger RH (2003) Application of gas chromatographymass spectrometry for analysis of isoprostanes: their role in cardiovascular disease. Clin Chem Lab Med 41: 1552-1561
-
(2003)
Clin Chem Lab Med
, vol.41
, pp. 1552-1561
-
-
Schwedhelm, E.1
Boger, R.H.2
-
31
-
-
33644876253
-
Database resources of the National Center for Biotechnology Information
-
Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Edgar R, Federhen S, Geer LY, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Ostell J, Miller V, Pruitt KD et al. (2006) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 34: D173-D180
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
Dicuccio, M.8
Edgar, R.9
Federhen, S.10
Geer, L.Y.11
Kapustin, Y.12
Khovayko, O.13
Landsman, D.14
Lipman, D.J.15
Madden, T.L.16
Maglott, D.R.17
Ostell, J.18
Miller, V.19
Pruitt, K.D.20
more..
-
32
-
-
33846088138
-
HMDB: The Human Metabolome Database
-
Wishart DS, Tzur D, Knox C, Eisner R, Guo AC, Young N, Cheng D, Jewell K, Arndt D, Sawhney S, Fung C, Nikolai L, Lewis M, Coutouly MA, Forsythe I, Tang P, Shrivastava S, Jeroncic K, Stothard P, Amegbey G et al. (2007) HMDB: the Human Metabolome Database. Nucleic Acids Res 35: D521-D526
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Wishart, D.S.1
Tzur, D.2
Knox, C.3
Eisner, R.4
Guo, A.C.5
Young, N.6
Cheng, D.7
Jewell, K.8
Arndt, D.9
Sawhney, S.10
Fung, C.11
Nikolai, L.12
Lewis, M.13
Coutouly, M.A.14
Forsythe, I.15
Tang, P.16
Shrivastava, S.17
Jeroncic, K.18
Stothard, P.19
Amegbey, G.20
more..
-
33
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, Suzek B (2006) The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res 34: D187-D191
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wu, C.H.1
Apweiler, R.2
Bairoch, A.3
Natale, D.A.4
Barker, W.C.5
Boeckmann, B.6
Ferro, S.7
Gasteiger, E.8
Huang, H.9
Lopez, R.10
Magrane, M.11
Martin, M.J.12
Mazumder, R.13
O'Donovan, C.14
Redaschi, N.15
Suzek, B.16
|