-
2
-
-
0023947965
-
Pharmaceutical innovation by the seven UK-owned pharmaceutical companies (1964 - 1985)
-
Prentis RA, Lis Y, Walker SR. Pharmaceutical innovation by the seven UK-owned pharmaceutical companies (1964 - 1985). Br J Clin Pharmacol 1988;25(3):387-96
-
(1988)
Br J Clin Pharmacol
, vol.25
, Issue.3
, pp. 387-96
-
-
Prentis, R.A.1
Lis, Y.2
Walker, S.R.3
-
3
-
-
24944547571
-
Why drugs fail - A study on side effects in new chemical entities
-
DOI 10.2174/138161205774414510
-
Schuster D, Laggner C, Langer T. Why drugs fail-a study on side effects in new chemical entities. Curr Pharm Des 2005;11(27):3545-59 (Pubitemid 41300759)
-
(2005)
Current Pharmaceutical Design
, vol.11
, Issue.27
, pp. 3545-3559
-
-
Schuster, D.1
Laggner, C.2
Langer, T.3
-
4
-
-
0037374498
-
The price of innovation: New estimates of drug development costs
-
DOI 10.1016/S0167-6296(02)00126-1
-
DiMasi JA, Hansen RW, Grabowski HG. The price of innovation: new estimates of drug development costs. J Health Econ 2003;22(2):151-85 (Pubitemid 36279392)
-
(2003)
Journal of Health Economics
, vol.22
, Issue.2
, pp. 151-185
-
-
DiMasi, J.A.1
Hansen, R.W.2
Grabowski, H.G.3
-
6
-
-
33745741280
-
Computational approaches for predicting CYP-related metabolism properties in the screening of new drugs
-
DOI 10.1016/j.ejmech.2006.03.003, PII S0223523406000791
-
Crivori P, Poggesi I. Computation approach for predicting CYP-related metabolism properties in the screening of new drugs. Eur J Med Chem 2006;41:795-808 (Pubitemid 44015977)
-
(2006)
European Journal of Medicinal Chemistry
, vol.41
, Issue.7
, pp. 795-808
-
-
Crivori, P.1
Poggesi, I.2
-
7
-
-
0041698413
-
Use of robust classification techniques for the prediction of human cytochrome P450 2D6 inhibition
-
Susnow RG, Dixon SL. Use of robust classification techniques for the prediction of human cytochrome P450 2D6 inhibition. J Chem Inf Comput Sci 2003;43(4):1308-15
-
(2003)
J Chem Inf Comput Sci
, vol.43
, Issue.4
, pp. 1308-15
-
-
Susnow, R.G.1
Dixon, S.L.2
-
8
-
-
0037364162
-
ADMET in silico modelling: Towards prediction paradise?
-
DOI 10.1038/nrd1032
-
van de Waterbeemd H, Gifford E. ADMET in silico modelling: towards prediction paradise? Nat Rev Drug Discov 2003;2(3):192-204 (Pubitemid 37361664)
-
(2003)
Nature Reviews Drug Discovery
, vol.2
, Issue.3
, pp. 192-204
-
-
Van De Waterbeemd, H.1
Gifford, E.2
-
9
-
-
75749083658
-
Novel application of 2D and 3D-similarity searches to identify substrates among cytochrome P450 2C9, 2D6, and 3A4
-
Freitas RF, Bauab RL, Montanari CA. Novel application of 2D and 3D-similarity searches to identify substrates among cytochrome P450 2C9, 2D6, and 3A4. J Chem Inf Model 2010;50(1):97-109
-
(2010)
J Chem Inf Model
, vol.50
, Issue.1
, pp. 97-109
-
-
Freitas, R.F.1
Bauab, R.L.2
Montanari, C.A.3
-
10
-
-
33847035148
-
State-of-the-art tools for computational site of metabolism predictions: Comparative analysis, mechanistical insights, and future applications
-
Afzelius L, Hasselgren Arnby C, Broo A, et al. State-of-the-art tools for computational site of metabolism predictions: comparative analysis, mechanistical insights, and future applications. Drug Metab Rev 2007;39(1):61-86
-
(2007)
Drug Metab Rev
, vol.39
, Issue.1
, pp. 61-86
-
-
Afzelius, L.1
Hasselgren Arnby, C.2
Broo, A.3
-
11
-
-
26944462419
-
Structures of human microsomal cytochrome P450 2A6 complexed with coumarin and methoxsalen
-
DOI 10.1038/nsmb971, PII NSMB971
-
Yano JK, Hsu MH, Griffin KJ, et al. Structures of human microsomal cytochrome P450 2A6 complexed with coumarin and methoxsalen. Nat Struct Mol Biol 2005;12(9):822-3 (Pubitemid 43086258)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.9
, pp. 822-823
-
-
Yano, J.K.1
Hsu, M.-H.2
Griffin, K.J.3
Stout, C.D.4
Johnson, E.F.5
-
12
-
-
0020597193
-
A high spin form of cytochrome P-450 highly purified from polychlorinated biphenyl-treated rats. Catalytic characterization and immunochemical quantitation in liver microsomes
-
Kamataki T, Maeda K, Yamazoe Y, et al. A high-spin form of cytochrome P-450 highly purified from polychlorinated biphenyl-treated rats. Catalytic characterization and immunochemical quantitation in liver microsomes. Mol Pharmacol 1983;24(1):146-55 (Pubitemid 13075118)
-
(1983)
Molecular Pharmacology
, vol.24
, Issue.1
, pp. 146-155
-
-
Kamataki, T.1
Maeda, K.2
Yamazoe, Y.3
-
13
-
-
0024343858
-
Human cytochrome P-450(PA) (P-450IA2), the phenacetin O-deethylase, is primarily responsible for the hepatic 3-demethylation of caffeine and N-oxidation of carcinogenic arylamines
-
Butler MA, Iwasaki M, Guengerich FP, et al. Human cytochrome P-450PA (P-450IA2), the phenacetin O-deethylase, is primarily responsible for the hepatic 3-demethylation of caffeine and N-oxidation of carcinogenic arylamines. Proc Natl Acad Sci USA 1989;86(20):7696-700 (Pubitemid 19265255)
-
(1989)
Proceedings of the National Academy of Sciences of the United States of America
, vol.86
, Issue.20
, pp. 7696-7700
-
-
Butler, M.A.1
Iwasaki, M.2
Guengerich, F.P.3
Kadlubar, F.F.4
-
14
-
-
0025239384
-
Mutagenic activation of 2-amino-3-methylimidazo[4,5-f]quinoline by complementary DNA-expressed human liver P-450
-
Aoyama T, Gelboin HV, Gonzalez FJ. Mutagenic activation of 2-amino-3- methylimidazo[4,5-f]quinoline by complementary DNA-expressed human liver P-450. Cancer Res 1990;50(7):2060-3 (Pubitemid 20115076)
-
(1990)
Cancer Research
, vol.50
, Issue.7
, pp. 2060-2063
-
-
Aoyama, T.1
Gelboin, H.V.2
Gonzalez, F.J.3
-
15
-
-
0028290229
-
Stable expression of human CYP1A2 and N-acetyltransferases in Chinese hamster CHL cells: Mutagenic activation of 2-amino-3-methylimidazo [4,5-f]quinoline and 2-amino-3,8- dimethylimidazo[4,5-f]quinoxaline
-
Yanagawa Y, Sawada M, Deguchi T, et al. Stable expression of human CYP1A2 and N-acetyltransferases in Chinese hamster CHL cells: mutagenic activation of 2-amino-3-methylimidazo [4,5-f]quinoline and 2-amino-3,8- dimethylimidazo[4,5-f] quinoxaline. Cancer Res 1994;54(13):3422-7
-
(1994)
Cancer Res
, vol.54
, Issue.13
, pp. 3422-7
-
-
Yanagawa, Y.1
Sawada, M.2
Deguchi, T.3
-
16
-
-
0037350164
-
Naturally occurring coumarins inhibit human cytochromes P450 and block benzo[a]pyrene and 7,12-dimethylbenz[a]anthracene DNA adduct formation in MCF-7 cells
-
DOI 10.1021/tx025636d
-
Kleiner HE, Reed MJ, DiGiovanni J. Naturally occurring coumarins inhibit human cytochromes P450 and block benzo[a]pyrene and 7,12-dimethylbenz[a] anthracene DNA adduct formation in MCF-7 cells. Chem Res Toxicol 2003;16(3):415-22 (Pubitemid 36373707)
-
(2003)
Chemical Research in Toxicology
, vol.16
, Issue.3
, pp. 415-422
-
-
Kleiner, H.E.1
Reed, M.J.2
DiGiovanni, J.3
-
17
-
-
14144253640
-
Metabolism and disposition kinetics of nicotine
-
DOI 10.1124/pr.57.1.3
-
Hukkanen J, Jacob P III, Benowitz NL. Metabolism and disposition kinetics of nicotine. Pharmacol Rev 2005;57(1):79-115 (Pubitemid 40283970)
-
(2005)
Pharmacological Reviews
, vol.57
, Issue.1
, pp. 79-115
-
-
Hukkanen, J.1
Jacob III, P.2
Benowitz, N.L.3
-
18
-
-
33750063673
-
Drugs and genotypes: How pharmacogenetic information could improve smoking cessation treatment
-
DOI 10.1177/1359786806066039
-
Lee AM, Tyndale RF. Drugs and genotypes: how pharmacogenetic information could improve smoking cessation treatment. J Psychopharmacol 2006;20(4 Suppl):7-14 (Pubitemid 44576652)
-
(2006)
Journal of Psychopharmacology
, vol.20
, Issue.4 SUPPL.
, pp. 7-14
-
-
Lee, A.M.1
Tyndale, R.F.2
-
19
-
-
34147195806
-
Overview of the pharmacogenomics of cigarette smoking
-
DOI 10.1038/sj.tpj.6500436, PII 6500436
-
Ho MK, Tyndale RF. Overview of the pharmacogenomics of cigarette smoking. Pharmacogenomics J 2007;7(2):81-98 (Pubitemid 46577845)
-
(2007)
Pharmacogenomics Journal
, vol.7
, Issue.2
, pp. 81-98
-
-
Ho, M.K.1
Tyndale, R.F.2
-
20
-
-
6344250770
-
57 varieties: The human cytochromes P450
-
DOI 10.1517/phgs.5.3.305.29827
-
Lewis DF. 57 varieties: the human cytochromes P450. Pharmacogenomics 2004;5(3):305-18 (Pubitemid 38499969)
-
(2004)
Pharmacogenomics
, vol.5
, Issue.3
, pp. 305-318
-
-
Lewis, D.F.V.1
-
21
-
-
0026035519
-
Role of human cytochrome P-450 IIE1 in the oxidation of many low molecular weight cancer suspects
-
Guengerich FP, Kim DH, Iwasaki M. Role of human cytochrome P-450 IIE1 in the oxidation of many low molecular weight cancer suspects. Chem Res Toxicol 1991;4(2):168-79
-
(1991)
Chem Res Toxicol
, vol.4
, Issue.2
, pp. 168-79
-
-
Guengerich, F.P.1
Kim, D.H.2
Iwasaki, M.3
-
22
-
-
3242740497
-
Prediction of drug-like molecular properties: Modeling cytochrome p450 interactions
-
Jalaie M, Arimoto R, Gifford E, et al. Prediction of drug-like molecular properties: modeling cytochrome p450 interactions. Methods Mol Biol 2004;275:449-520
-
(2004)
Methods Mol Biol
, vol.275
, pp. 449-520
-
-
Jalaie, M.1
Arimoto, R.2
Gifford, E.3
-
24
-
-
27644596457
-
Predicting in vivo drug interactions from in vitro drug discovery data
-
DOI 10.1038/nrd1851, PII N1851
-
Wienkers LC, Heath TG. Predicting in vivo drug interactions from in vitro drug discovery data. Nat Rev Drug Discov 2005;4(10):825-33 (Pubitemid 41553963)
-
(2005)
Nature Reviews Drug Discovery
, vol.4
, Issue.10
, pp. 825-833
-
-
Wienkers, L.C.1
Heath, T.G.2
-
25
-
-
33644828608
-
Prediction of small-molecule binding to cytochrome P450 3A4: Flexible docking combined with multidimensional QSAR
-
DOI 10.1002/cmdc.200500024
-
Lill MA, Dobler M, Vedani A. Prediction of small-molecule binding to cytochrome P450 3A4: flexible docking combined with multidimensional QSAR. ChemMedChem 2006;1(1):73-81 (Pubitemid 44104980)
-
(2006)
ChemMedChem
, vol.1
, Issue.1
, pp. 73-81
-
-
Lill, M.A.1
Dobler, M.2
Vedani, A.3
-
26
-
-
0034962557
-
Pharmacophore and three-dimensional quantitative structure activity relationship methods for modeling cytochrome p450 active sites
-
Ekins S, de Groot MJ, Jones JP. Pharmacophore and three-dimensional quantitative structure activity relationship methods for modeling cytochrome p450 active sites. Drug Metab Dispos 2001;29(7):936-44 (Pubitemid 32605906)
-
(2001)
Drug Metabolism and Disposition
, vol.29
, Issue.7
, pp. 936-944
-
-
Ekins, S.1
De Groot, M.J.2
Jones, J.P.3
-
27
-
-
0042357537
-
Generation and validation of rapid computational filters for CYP2D6 and CYP3A4
-
DOI 10.1124/dmd.31.9.1077
-
Ekins S, Berbaum J, Harrison RK. Generation and validation of rapid computational filters for cyp2d6 and cyp3a4. Drug Metab Dispos 2003;31(9):1077-80 (Pubitemid 37048276)
-
(2003)
Drug Metabolism and Disposition
, vol.31
, Issue.9
, pp. 1077-1080
-
-
Ekins, S.1
Berbaum, J.2
Harrison, R.K.3
-
28
-
-
18244391004
-
Structure-based methods for the prediction of the dominant P450 enzyme in human drug biotransformation: Consideration of CYP3A4, CYP2C9, CYP2D6
-
DOI 10.1080/10629360412331319871
-
Manga N, Duffy JC, Rowe PH, et al. Structure-based methods for the prediction of the dominant P450 enzyme in human drug biotransformation: consideration of CYP3A4, CYP2C9, CYP2D6. SAR QSAR Environ Res 2005;16(1):43-61 (Pubitemid 40623242)
-
(2005)
SAR and QSAR in Environmental Research
, vol.16
, Issue.1-2
, pp. 43-61
-
-
Manga, N.1
Duffy, J.C.2
Rowe, P.H.3
Cronin, M.T.D.4
-
29
-
-
38949094492
-
Cytochrome P450 and chemical toxicology
-
DOI 10.1021/tx700079z
-
Guengerich FP. Cytochrome p450 and chemical toxicology. Chem Res Toxicol 2008;21(1):70-83 (Pubitemid 351219709)
-
(2008)
Chemical Research in Toxicology
, vol.21
, Issue.1
, pp. 70-83
-
-
Guengerich, F.P.1
-
30
-
-
0034973607
-
Cytochrome P450 and metabolism of xenobiotics
-
Anzenbacher P, Anzenbacherova E. Cytochrome P450 and metabolism of xenobiotics. Cell Mol Life Sci 2001;58(4):737-47
-
(2001)
Cell Mol Life Sci
, vol.58
, Issue.4
, pp. 737-47
-
-
Anzenbacher, P.1
Anzenbacherova, E.2
-
31
-
-
33745574979
-
Drug interactions in cancer therapy
-
DOI 10.1038/nrc1887, PII N1887
-
Scripture CD, Figg WD. Drug interactions in cancer therapy. Nat Rev Cancer 2006;6(7):546-58 (Pubitemid 43980543)
-
(2006)
Nature Reviews Cancer
, vol.6
, Issue.7
, pp. 546-558
-
-
Scripture, C.D.1
Figg, W.D.2
-
32
-
-
22144466197
-
A support vector machine approach to classify human cytochrome P450 3A4 inhibitors
-
DOI 10.1007/s10822-005-3785-3
-
Kriegl JM, Arnhold T, Beck B, et al. A support vector machine approach to classify human cytochrome P450 3A4 inhibitors. J Comput Aided Mol Des 2005;19(3):189-201 (Pubitemid 40974006)
-
(2005)
Journal of Computer-Aided Molecular Design
, vol.19
, Issue.3
, pp. 189-201
-
-
Kriegl, J.M.1
Arnhold, T.2
Beck, B.3
Fox, T.4
-
33
-
-
64549130038
-
Updates on cytochrome P450-mediated cardiovascular drug interactions
-
Cheng JW, Frishman WH, Aronow WS. Updates on cytochrome P450-mediated cardiovascular drug interactions. Am J Ther 2009;16(2):155-63
-
(2009)
Am J Ther
, vol.16
, Issue.2
, pp. 155-63
-
-
Cheng, J.W.1
Frishman, W.H.2
Aronow, W.S.3
-
34
-
-
77349099490
-
Updates on cytochrome p450-mediated cardiovascular drug interactions
-
Cheng JW, Frishman WH, Aronow WS. Updates on cytochrome p450-mediated cardiovascular drug interactions. Dis Mon 2010;56(3):163-79
-
(2010)
Dis Mon
, vol.56
, Issue.3
, pp. 163-79
-
-
Cheng, J.W.1
Frishman, W.H.2
Aronow, W.S.3
-
35
-
-
53449100041
-
-
Indiana University School of Medicine [Cited 20 January 2011]
-
Flockhart DA. Drug interactions: cytochrome P450 drug interaction table. Indiana University School of Medicine (2007). Available from: http://medicine. iupui.edu/clinpharm/ddis/table.asp [Cited 20 January 2011]
-
(2007)
Drug Interactions: Cytochrome P450 Drug Interaction Table
-
-
Flockhart, D.A.1
-
36
-
-
13544249943
-
Genetic polymorphisms of cytochrome P450 2D6 (CYP2D6): Clinical consequences, evolutionary aspects and functional diversity
-
DOI 10.1038/sj.tpj.6500285
-
Ingelman-Sundberg M. Genetic polymorphisms of cytochrome P450 2D6 (CYP2D6): clinical consequences, evolutionary aspects and functional diversity. Pharmacogenomics J 2005;5(1):6-13 (Pubitemid 40220611)
-
(2005)
Pharmacogenomics Journal
, vol.5
, Issue.1
, pp. 6-13
-
-
Ingelman-Sundberg, M.1
-
37
-
-
0032822383
-
Three-dimensional-quantitative structure activity relationship analysis of cytochrome P-450 3A4 substrates
-
Ekins S, Bravi G, Wikel JH, et al. Three-dimensional-quantitative structure activity relationship analysis of cytochrome P-450 3A4 substrates. J Pharmacol Exp Ther 1999;291(1):424-33 (Pubitemid 29451619)
-
(1999)
Journal of Pharmacology and Experimental Therapeutics
, vol.291
, Issue.1
, pp. 424-433
-
-
Ekins, S.1
Bravi, G.2
Wikel, J.H.3
Wrighton, S.A.4
-
38
-
-
0032964028
-
Three-dimensional quantitative structure activity relationship analyses of substrates for CYP2B6
-
Ekins S, Bravi G, Ring BJ, et al. Three-dimensional quantitative structure activity relationship analyses of substrates for CYP2B6. J Pharmacol Exp Ther 1999;288(1):21-9 (Pubitemid 29113468)
-
(1999)
Journal of Pharmacology and Experimental Therapeutics
, vol.288
, Issue.1
, pp. 21-29
-
-
Ekins, S.1
Bravi, G.2
Ring, B.J.3
Gillespie, T.A.4
Gillespie, J.S.5
Vandenbranden, M.6
Wrighton, S.A.7
Wikel, J.H.8
-
39
-
-
0036223228
-
Structure-activity relationship for human cytochrome P450 substrates and inhibitors
-
DOI 10.1081/DMR-120001391
-
Lewis DF, Modi S, Dickins M. Structure-activity relationship for human cytochrome P450 substrates and inhibitors. Drug Metab Rev 2002;34(1-2):69-82 (Pubitemid 34311089)
-
(2002)
Drug Metabolism Reviews
, vol.34
, Issue.1-2
, pp. 69-82
-
-
Lewis, D.F.V.1
Modi, S.2
Dickins, M.3
-
40
-
-
0345282980
-
Comparative molecular field analysis and QSAR on substrates binding to cytochrome P450 2D6
-
DOI 10.1016/S0968-0896(03)00525-X
-
Haji-Momenian S, Rieger JM, Macdonald TL, et al. Comparative molecular field analysis and QSAR on substrates binding to cytochrome p450 2D6. Bioorg Med Chem 2003;11(24):5545-54 (Pubitemid 37464682)
-
(2003)
Bioorganic and Medicinal Chemistry
, vol.11
, Issue.24
, pp. 5545-5554
-
-
Haji-Momenian, S.1
Rieger, J.M.2
Macdonald, T.L.3
Brown, M.L.4
-
41
-
-
4644271822
-
Kohonen maps for prediction of binding to human cytochrome P450 3A4
-
DOI 10.1124/dmd.104.000356
-
Balakin KV, Ekins S, Bugrim A, et al. Kohonen maps for prediction of binding to human cytochrome P450 3A4. Drug Metab Dispos 2004;32(10):1183-9 (Pubitemid 39287594)
-
(2004)
Drug Metabolism and Disposition
, vol.32
, Issue.10
, pp. 1183-1189
-
-
Balakin, K.V.1
Ekins, S.2
Bugrim, A.3
Ivanenkov, Y.A.4
Korolev, D.5
Nikolsky, Y.V.6
Skorenko, A.V.7
Ivashchenko, A.A.8
Savchuk, N.P.9
Nikolskaya, T.10
-
42
-
-
23844460948
-
Prediction of cytochrome P450 3A4, 2D6, and 2C9 inhibitors and substrates by using support vector machines
-
DOI 10.1021/ci0500536
-
Yap CW, Chen YZ. Prediction of cytochrome P450 3A4, 2D6, and 2C9 inhibitors and substrates by using support vector machines. J Chem Inf Model 2005;45(4):982-92 (Pubitemid 41156697)
-
(2005)
Journal of Chemical Information and Modeling
, vol.45
, Issue.4
, pp. 982-992
-
-
Yap, C.W.1
Chen, Y.Z.2
-
43
-
-
0020008544
-
Evolutionary search: Gradients and information
-
Rada R. Evolutionary search: gradients and information. Biosystems 1982;15(2):169-77
-
(1982)
Biosystems
, vol.15
, Issue.2
, pp. 169-77
-
-
Rada, R.1
-
44
-
-
41549125090
-
How to winnow actives from inactives: Introducing molecular orthogonal sparse bigrams (MOSBs) and multiclass winnow
-
DOI 10.1021/ci700350n
-
Nigsch F, Mitchell JB. How to winnow actives from inactives: introducing molecular orthogonal sparse bigrams (MOSBs) and multiclass Winnow. J Chem Inf Model 2008;48(2):306-18 (Pubitemid 351473034)
-
(2008)
Journal of Chemical Information and Modeling
, vol.48
, Issue.2
, pp. 306-318
-
-
Nigsch, F.1
Mitchell, J.B.O.2
-
45
-
-
5544290537
-
Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): Evaluation of performance
-
Bender A, Mussa HY, Glen RC, et al. Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): evaluation of performance. J Chem Inf Comput Sci 2004;44(5):1708-18
-
(2004)
J Chem Inf Comput Sci
, vol.44
, Issue.5
, pp. 1708-18
-
-
Bender, A.1
Mussa, H.Y.2
Glen, R.C.3
-
46
-
-
34547679825
-
Ligand-based models for the isoform specificity of cytochrome P450 3A4, 2D6, and 2C9 substrates
-
DOI 10.1021/ci700010t
-
Terfloth L, Bienfait B, Gasteiger J. Ligand-based models for the isoform specificity of cytochrome P450 3A4, 2D6, and 2C9 substrates. J Chem Inf Model 2007;47(4):1688-701 (Pubitemid 47210071)
-
(2007)
Journal of Chemical Information and Modeling
, vol.47
, Issue.4
, pp. 1688-1701
-
-
Terfloth, L.1
Bienfait, B.2
Gasteiger, J.3
-
47
-
-
7244250182
-
Data mining in bioinformatics using Weka
-
DOI 10.1093/bioinformatics/bth261
-
Frank E, Hall M, Trigg L, et al. Data mining in bioinformatics using Weka. Bioinformatics 2004;20(15):2479-81 (Pubitemid 39429925)
-
(2004)
Bioinformatics
, vol.20
, Issue.15
, pp. 2479-2481
-
-
Frank, E.1
Hall, M.2
Trigg, L.3
Holmes, G.4
Witten, I.H.5
-
48
-
-
61449101715
-
Classification of cytochrome P450 1A2 inhibitors and noninhibitors by machine learning techniques
-
Vasanthanathan P, Taboureau O, Oostenbrink C, et al. Classification of cytochrome P450 1A2 inhibitors and noninhibitors by machine learning techniques. Drug Metab Dispos 2009;37(3):658-64
-
(2009)
Drug Metab Dispos
, vol.37
, Issue.3
, pp. 658-64
-
-
Vasanthanathan, P.1
Taboureau, O.2
Oostenbrink, C.3
-
49
-
-
0035289779
-
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
-
DOI 10.1016/S0169-409X(00)00129-0, PII S0169409X00001290
-
Lipinski CA, Lombardo F, Dominy BW, et al. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 2001;46(1-3):3-26 (Pubitemid 33653411)
-
(2000)
Advanced Drug Delivery Reviews
, vol.46
, Issue.1-3
, pp. 3-26
-
-
Lipinski, C.A.1
Lombardo, F.2
Dominy, B.W.3
Feeney, P.J.4
-
50
-
-
77954550949
-
Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule
-
Mishra NK, Agarwal S, Raghava GP. Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule. BMC Pharmacol 2010;10:8
-
(2010)
BMC Pharmacol
, vol.10
, pp. 8
-
-
Mishra, N.K.1
Agarwal, S.2
Raghava, G.P.3
-
51
-
-
38549151817
-
DrugBank: A knowledgebase for drugs, drug actions and drug targets
-
DOI 10.1093/nar/gkm958
-
Wishart DS, Knox C, Guo AC, et al. DrugBank: a knowledgebase for drugs, drug actions and drug targets. Nucleic Acids Res 2008;36(Database issue):D901-6 (Pubitemid 351149842)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Cheng, D.4
Shrivastava, S.5
Tzur, D.6
Gautam, B.7
Hassanali, M.8
-
52
-
-
0002714543
-
Making large scale SVM learning practical
-
Bernhard Scholkopf, editor The MIT Press, USA
-
Joachims T. Making large scale SVM learning practical. In Bernhard Scholkopf, editor. Advances in kernel methods: support vector learning. The MIT Press, USA; 1999. p. 169-84
-
(1999)
Advances in Kernel Methods: Support Vector Learning
, pp. 169-84
-
-
Joachims, T.1
-
53
-
-
0036135826
-
Combined three-dimensional quantitative structure-activity relationship analysis of cytochrome P450 2B6 substrates and protein homology modeling
-
DOI 10.1124/dmd.30.1.86
-
Wang Q, Halpert JR. Combined three-dimensional quantitative structure-activity relationship analysis of cytochrome P450 2B6 substrates and protein homology modeling. Drug Metab Dispos 2002;30(1):86-95 (Pubitemid 34016945)
-
(2002)
Drug Metabolism and Disposition
, vol.30
, Issue.1
, pp. 86-95
-
-
Wang, Q.1
Halpert, J.R.2
-
54
-
-
0033967525
-
Theoretical investigation of substrate specificity for cytochromes P450 IA2, P450 IID6 and P450 IIIA4
-
DOI 10.1023/A:1008187802746
-
De Rienzo F, Fanelli F, Menziani MC, et al. Theoretical investigation of substrate specificity for cytochromes P450 IA2, P450 IID6 and P450 IIIA4. J Comput Aided Mol Des 2000;14(1):93-116 (Pubitemid 30103825)
-
(2000)
Journal of Computer-Aided Molecular Design
, vol.14
, Issue.1
, pp. 93-116
-
-
De Rienzo, F.1
Fanelli, F.2
Menziani, M.C.3
De Benedetti, P.G.4
-
55
-
-
0036794440
-
Three-dimensional quantitative structure activity relationship for Cyp2d6 substrates
-
DOI 10.1002/1521-3838(200210)2 1:4<357::AID-QSAR357>3.0.CO;2-D
-
Snyder R, Sangar R, Wang J, et al. Three-dimensional quantitative structure activity relationship for Cyp2d6 substrates. QSAR 2002;21(4):357-68 (Pubitemid 35177919)
-
(2002)
Quantitative Structure-Activity Relationships
, vol.21
, Issue.4
, pp. 357-368
-
-
Snyder, R.1
Sangar, R.2
Wang, J.3
Ekins, S.4
-
56
-
-
78651478620
-
Probing small-molecule binding to cytochrome P450 2D6 and 2C9: An in silico protocol for generating toxicity alerts
-
Rossato G, Ernst B, Smiesko M, et al. Probing small-molecule binding to cytochrome P450 2D6 and 2C9: an in silico protocol for generating toxicity alerts. ChemMedChem 2010;5(12):2088-101
-
(2010)
ChemMedChem
, vol.5
, Issue.12
, pp. 2088-101
-
-
Rossato, G.1
Ernst, B.2
Smiesko, M.3
-
57
-
-
77952985827
-
Improved ligand-protein binding affinity predictions using multiple binding modes
-
Stjernschantz E, Oostenbrink C. Improved ligand-protein binding affinity predictions using multiple binding modes. Biophys J 2010;98(11):2682-91
-
(2010)
Biophys J
, vol.98
, Issue.11
, pp. 2682-91
-
-
Stjernschantz, E.1
Oostenbrink, C.2
-
58
-
-
0036686784
-
A fast virtual screening filter for cytochrome P450 3A4 inhibition liability of compound libraries
-
DOI 10.1002/1521-3838(200208)2 1:3<249::AID-QSAR249>3.0.CO;2-S
-
Zuegge J, Fechner U, Roche O, et al. A fast virtual screening filter for cytochrome P450 3A4 inhibition liability of compound libraries. QSAR 2002;21(3):249-56 (Pubitemid 34951595)
-
(2002)
Quantitative Structure-Activity Relationships
, vol.21
, Issue.3
, pp. 249-256
-
-
Zuegge, J.1
Fechner, U.2
Roche, O.3
Parrott, N.J.4
Engkvist, O.5
Schneider, G.6
-
59
-
-
0037059925
-
A neural network based virtual screening of cytochrome P450 3A4 inhibitors
-
DOI 10.1016/S0960-894X(01)00771-5, PII S0960894X01007715
-
Molnar L, Keseru GM. A neural network based virtual screening of cytochrome P450 3A4 inhibitors. Bioorg Med Chem Lett 2002;12(3):419-21 (Pubitemid 34113917)
-
(2002)
Bioorganic and Medicinal Chemistry Letters
, vol.12
, Issue.3
, pp. 419-421
-
-
Molnar, L.1
Keseru, G.M.2
-
60
-
-
0033934402
-
Quantitative structure-activity relationships (QSAR) study of flavonoid derivatives for inhibition of cytochrome p450 1A2
-
DOI 10.1002/1521-3838(200006) 19:3<257::AID-QSAR257>3.0.CO;2-2
-
Moon T, Chi MH, Kim D-H, et al. Quantitative structure-activity relationships (qsar) study of flavonoid derivatives for inhibition of cytochrome P450 1A2. QSAR 2000;19(3):257-63 (Pubitemid 30428231)
-
(2000)
Quantitative Structure-Activity Relationships
, vol.19
, Issue.3
, pp. 257-263
-
-
Moon, T.1
Chi, M.H.2
Kim, D.-H.3
Yoon, C.N.4
Choi, Y.-S.5
-
61
-
-
13944268698
-
Greater than the sum of its parts: Combining models for useful ADMET prediction
-
DOI 10.1021/jm049254b
-
OBrien SE, de Groot MJ. Greater than the sum of its parts: combining models for useful ADMET prediction. J Med Chem 2005;48(4):1287-91 (Pubitemid 40270476)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.4
, pp. 1287-1291
-
-
O'Brien, S.E.1
De Groot, M.J.2
-
62
-
-
0035099265
-
A comparative molecular field analysis of cytochrome P450 2A5 and 2A6 inhibitors
-
DOI 10.1023/A:1008102217770
-
Poso A, Gynther J, Juvonen R. A comparative molecular field analysis of cytochrome P450 2A5 and 2A6 inhibitors. J Comput Aided Mol Des 2001;15(3):195-202 (Pubitemid 32219934)
-
(2001)
Journal of Computer-Aided Molecular Design
, vol.15
, Issue.3
, pp. 195-202
-
-
Poso, A.1
Gynther, J.2
Juvonen, R.3
-
63
-
-
0038771110
-
Predictive value of comparative molecular field analysis modelling of naphthalene inhibition of human CYP2A6 and mouse CYP2A5 enzymes
-
DOI 10.1016/S0887-2333(03)00065-1
-
Asikainen A, Tarhanen J, Poso A, et al. Predictive value of comparative molecular field analysis modelling of naphthalene inhibition of human CYP2A6 and mouse CYP2A5 enzymes. Toxicol In Vitro 2003;17(4):449-55 (Pubitemid 36776786)
-
(2003)
Toxicology in Vitro
, vol.17
, Issue.4
, pp. 449-455
-
-
Asikainen, A.1
Tarhanen, J.2
Poso, A.3
Pasanen, M.4
Alhava, E.5
Juvonen, R.O.6
-
64
-
-
12344337351
-
Quantitative structure-activity relationship analysis of inhibitors of the nicotine metabolizing CYP2A6 enzyme
-
DOI 10.1021/jm049536b
-
Rahnasto M, Raunio H, Poso A, et al. Quantitative structure-activity relationship analysis of inhibitors of the nicotine metabolizing CYP2A6 enzyme. J Med Chem 2005;48(2):440-9 (Pubitemid 40139786)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.2
, pp. 440-449
-
-
Rahnasto, M.1
Raunio, H.2
Poso, A.3
Wittekindt, C.4
Juvonen, R.O.5
-
65
-
-
0033011395
-
Three- and four-dimensional quantitative structure activity relationship analyses of cytochrome P-450 3A4 inhibitors
-
Ekins S, Bravi G, Binkley S, et al. Three- and four-dimensional quantitative structure activity relationship analyses of cytochrome P-450 3A4 inhibitors. J Pharmacol Exp Ther 1999;290(1):429-38 (Pubitemid 29302353)
-
(1999)
Journal of Pharmacology and Experimental Therapeutics
, vol.290
, Issue.1
, pp. 429-438
-
-
Ekins, S.1
Bravi, G.2
Binkley, S.3
Gillespie, J.S.4
Ring, B.J.5
Wikel, J.H.6
Wrighton, S.A.7
-
66
-
-
0033856020
-
Three- and four-dimensional-quantitative structure activity relationship (3D/4D-qsar) analyses of CYP2C9 inhibitors
-
Ekins S, Bravi G, Binkley S, et al. Three- and four-dimensional- quantitative structure activity relationship (3D/4DQSAR) analyses of CYP2C9 inhibitors. Drug Metab Dispos 2000;28(8):994-1002 (Pubitemid 30612621)
-
(2000)
Drug Metabolism and Disposition
, vol.28
, Issue.8
, pp. 994-1002
-
-
Ekins, S.1
Bravi, G.2
Binkley, S.3
Gillespie, J.S.4
Ring, B.J.5
Wikel, J.H.6
Wrighton, S.A.7
-
67
-
-
0030053733
-
Three-dimensional quantitative structure-activity relationship for inhibitors of cytochrome P4502C9
-
Jones JP, He M, Trager WF, et al. Three-dimensional quantitative structure-activity relationship for inhibitors of cytochrome P4502C9. Drug Metab Dispos 1996;24(1):1-6 (Pubitemid 26029580)
-
(1996)
Drug Metabolism and Disposition
, vol.24
, Issue.1
, pp. 1-6
-
-
Jones, J.P.1
He, M.2
Trager, W.F.3
Rettie, A.E.4
-
68
-
-
0034721138
-
A refined 3-dimensional QSAR of cytochrome P450 2C9: Computational predictions of drug interactions
-
DOI 10.1021/jm000048n
-
Rao S, Aoyama R, Schrag M, et al. A refined 3-dimensional QSAR of cytochrome P450 2C9: computational predictions of drug interactions. J Med Chem 2000;43(15):2789-96 (Pubitemid 30599636)
-
(2000)
Journal of Medicinal Chemistry
, vol.43
, Issue.15
, pp. 2789-2796
-
-
Rao, S.1
Aoyama, R.2
Schrag, M.3
Trager, W.F.4
Rettie, A.5
Jones, J.P.6
-
69
-
-
12244310480
-
Discriminant and quantitative PLS analysis of competitive CYP2C9 inhibitors versus non-inhibitors using alignment independent GRIND descriptors
-
DOI 10.1023/A:1021281008423
-
Afzelius L, Masimirembwa CM, Karlen A, et al. Discriminant and quantitative PLS analysis of competitive CYP2C9 inhibitors versus non-inhibitors using alignment independent GRIND descriptors. J Comput Aided Mol Des 2002;16(7):443-58 (Pubitemid 36018696)
-
(2002)
Journal of Computer-Aided Molecular Design
, vol.16
, Issue.7
, pp. 443-458
-
-
Afzeliu, L.1
Masimirembwa, C.M.2
Karlen, A.3
Anderson, T.B.4
Zamora, I.5
-
70
-
-
0842304425
-
Conformer- and alignment-independent model for predicting structurally diverse competitive CYP2C9 inhibitors
-
DOI 10.1021/jm030972s
-
Afzelius L, Zamora I, Masimirembwa CM, et al. Conformer- and alignment-independent model for predicting structurally diverse competitive CYP2C9 inhibitors. J Med Chem 2004;47(4):907-14 (Pubitemid 38176793)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.4
, pp. 907-914
-
-
Afzelius, L.1
Zamora, I.2
Masimirembwa, C.M.3
Karlen, A.4
Andersson, T.B.5
Mecucci, S.6
Baroni, M.7
Cruciani, G.8
-
71
-
-
0027314831
-
Development of a pharmacophore for inhibition of human liver cytochrome P- 450 2D6: Molecular modeling and inhibition studies
-
DOI 10.1021/jm00061a004
-
Strobl GR, von Kruedener S, Stockigt J, et al. Development of a pharmacophore for inhibition of human liver cytochrome P-450 2D6: molecular modeling and inhibition studies. J Med Chem 1993;36(9):1136-45 (Pubitemid 23159287)
-
(1993)
Journal of Medicinal Chemistry
, vol.36
, Issue.9
, pp. 1136-1145
-
-
Strobl, G.R.1
Von Kruedener, S.2
Stockigt, J.3
Guengerich, F.P.4
Wolff, T.5
-
72
-
-
0032849040
-
Three and four dimensional-quantitative structure activity relationship (3D/4D-QSAR) analyses of CYP2D6 inhibitors
-
Ekins S, Bravi G, Binkley S, et al. Three and four dimensional- quantitative structure activity relationship (3D/4DQSAR) analyses of CYP2D6 inhibitors. Pharmacogenetics 1999;9(4):477-89 (Pubitemid 29419566)
-
(1999)
Pharmacogenetics
, vol.9
, Issue.4
, pp. 477-489
-
-
Ekins, S.1
Bravi, G.2
Binkley, S.3
Gillespie, J.S.4
Ring, B.J.5
Wikel, J.H.6
Wrighton, S.A.7
-
73
-
-
15244357615
-
Predictive model for identifying potential CYP2D6 inhibitors
-
DOI 10.1111/j.1742-7843.2005.pto960320.x
-
Crivori P, Poggesi I. Predictive model for identifying potential CYP2D6 inhibitors. Basic Clin Pharmacol Toxicol 2005;96(3):251-3 (Pubitemid 40388007)
-
(2005)
Basic and Clinical Pharmacology and Toxicology
, vol.96
, Issue.3
, pp. 251-253
-
-
Crivori, P.1
Poggesi, I.2
-
74
-
-
15244351423
-
Multivariate modeling of cytochrome P450 3A4 inhibition
-
DOI 10.1016/j.ejps.2004.12.009
-
Kriegl JM, Eriksson L, Arnhold T, et al. Multivariate modeling of cytochrome P450 3A4 inhibition. Eur J Pharm Sci 2005;24(5):451-63 (Pubitemid 40387259)
-
(2005)
European Journal of Pharmaceutical Sciences
, vol.24
, Issue.5
, pp. 451-463
-
-
Kriegl, J.M.1
Eriksson, L.2
Arnhold, T.3
Beck, B.4
Johansson, E.5
Fox, T.6
-
75
-
-
67949099093
-
Fragment-based prediction of cytochromes P450 2D6 and 1A2 inhibition by recursive partitioning
-
Burton J, Danloy E, Vercauteren DP. Fragment-based prediction of cytochromes P450 2D6 and 1A2 inhibition by recursive partitioning. SAR QSAR Environ Res 2009;20(3-4):185-205
-
(2009)
SAR QSAR Environ Res
, vol.20
, Issue.3-4
, pp. 185-205
-
-
Burton, J.1
Danloy, E.2
Vercauteren, D.P.3
-
76
-
-
78649334246
-
The computational model to predict accurately inhibitory activity for inhibitors towards CYP3A4
-
Xie Z, Zhang T, Wang JF, et al. The computational model to predict accurately inhibitory activity for inhibitors towards CYP3A4. Comput Biol Med 2010;40(11-12):845-52
-
(2010)
Comput Biol Med
, vol.40
, Issue.11-12
, pp. 845-52
-
-
Xie, Z.1
Zhang, T.2
Wang, J.F.3
-
77
-
-
20144370197
-
Predictive three-dimensional quantitative structure-activity relationship of cytochrome P450 1A2 inhibitors
-
DOI 10.1021/jm0489713
-
Korhonen LE, Rahnasto M, Mahonen NJ, et al. Predictive three-dimensional quantitative structure-activity relationship of cytochrome P450 1A2 inhibitors. J Med Chem 2005;48(11):3808-15 (Pubitemid 40776855)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.11
, pp. 3808-3815
-
-
Korhonen, L.E.1
Rahnasto, M.2
Mahonen, N.J.3
Wittekindt, C.4
Poso, A.5
Juvonen, R.O.6
Raunio, H.7
-
78
-
-
23444437988
-
A rapid computational filter for cytochrome P450 1A2 inhibition potential of compound libraries
-
DOI 10.1021/jm048959a
-
Chohan KK, Paine SW, Mistry J, et al. A rapid computational filter for cytochrome P450 1A2 inhibition potential of compound libraries. J Med Chem 2005;48(16):5154-61 (Pubitemid 41113903)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.16
, pp. 5154-5161
-
-
Chohan, K.K.1
Paine, S.W.2
Mistry, J.3
Barton, P.4
Davis, A.M.5
-
79
-
-
0141789965
-
QSAR analysis of the inhibition of recombinant CYP 3A4 activity by structurally diverse compounds using a genetic algorithm-combined partial least squares method
-
DOI 10.1023/A:1025702009611
-
Wanchana S, Yamashita F, Hashida M. QSAR analysis of the inhibition of recombinant CYP 3A4 activity by structurally diverse compounds using a genetic algorithm-combined partial least squares method. Pharm Res 2003;20(9):1401-8 (Pubitemid 37164048)
-
(2003)
Pharmaceutical Research
, vol.20
, Issue.9
, pp. 1401-1408
-
-
Wanchana, S.1
Yamashita, F.2
Hashida, M.3
-
80
-
-
34547158029
-
Quantitative structure activity relationship study of binding affinity of azole compounds with CYP2AB and CYP3A4
-
Itokawa D, Nishioka T, Fukushima J. Quantitative structure activity relationship study of binding affinity of azole compounds with CYP2AB and CYP3A4. QSAR Comb Sci 2007;26:628-36
-
(2007)
QSAR Comb Sci
, vol.26
, pp. 628-36
-
-
Itokawa, D.1
Nishioka, T.2
Fukushima, J.3
-
81
-
-
42049100581
-
Exploring QSARs for binding affinity of azoles with CYP2B and CYP3A enzymes using GFA and G/PLS techniques
-
DOI 10.1111/j.1747-0285.2008.00658.x
-
Roy K, Roy PP. Exploring QSARs for binding affinity of azoles with CYP2B and CYP3A enzymes using GFA and G/ PLS techniques. Chem Biol Drug Des 2008;71(5):464-73 (Pubitemid 351519508)
-
(2008)
Chemical Biology and Drug Design
, vol.71
, Issue.5
, pp. 464-473
-
-
Roy, K.1
Roy, P.P.2
-
82
-
-
62549093519
-
Exploring QSAR and QAAR for inhibitors of cytochrome P450 2A6 and 2A5 enzymes using GFA and G/PLS techniques
-
Roy K, Roy PP. Exploring QSAR and QAAR for inhibitors of cytochrome P450 2A6 and 2A5 enzymes using GFA and G/PLS techniques. Eur J Med Chem 2009;44(5):1941-51
-
(2009)
Eur J Med Chem
, vol.44
, Issue.5
, pp. 1941-51
-
-
Roy, K.1
Roy, P.P.2
-
83
-
-
77951439430
-
Exploring QSAR for CYP11B2 binding affinity and CYP11B2/CYP11B1 selectivity of diverse functional compounds using GFA and G/PLS techniques
-
Roy PP, Roy K. Exploring QSAR for CYP11B2 binding affinity and CYP11B2/CYP11B1 selectivity of diverse functional compounds using GFA and G/PLS techniques. J Enzyme Inhib Med Chem 2010;25(3):354-69
-
(2010)
J Enzyme Inhib Med Chem
, vol.25
, Issue.3
, pp. 354-69
-
-
Roy, P.P.1
Roy, K.2
-
84
-
-
33846923287
-
In silico prediction of cytochrome P450 2D6 and 3A4 inhibition using Gaussian Kernel weighted k-nearest neighbor and extended connectivity fingerprints, including structural fragment analysis of inhibitors versus noninhibitors
-
DOI 10.1021/jm060333s
-
Jensen BF, Vind C, Padkjaer SB, et al. In silico prediction of cytochrome P450 2D6 and 3A4 inhibition using Gaussian kernel weighted k-nearest neighbor and extended connectivity fingerprints, including structural fragment analysis of inhibitors versus noninhibitors. J Med Chem 2007;50(3):501-11 (Pubitemid 46239784)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.3
, pp. 501-511
-
-
Jensen, B.F.1
Vind, C.2
Padkjaer, S.B.3
Brockhoff, P.B.4
Refsgaard, H.H.F.5
-
85
-
-
68549101568
-
Conceptual DFT properties-based 3D QSAR: Analysis of inhibitors of the nicotine metabolizing CYP2A6 enzyme
-
Van Damme S, Bultinck P. Conceptual DFT properties-based 3D QSAR: analysis of inhibitors of the nicotine metabolizing CYP2A6 enzyme. J Comput Chem 2009;30(12):1749-57
-
(2009)
J Comput Chem
, vol.30
, Issue.12
, pp. 1749-57
-
-
Van Damme, S.1
Bultinck, P.2
-
86
-
-
36949009228
-
Generation of in-silico cytochrome P450 1A2, 2C9, 2C19, 2D6, and 3A4 inhibition QSAR models
-
DOI 10.1007/s10822-007-9139-6
-
Gleeson MP, Davis AM, Chohan KK, et al. Generation of in-silico cytochrome P450 1A2, 2C9, 2C19, 2D6, and 3A4 inhibition QSAR models. J Comput Aided Mol Des 2007;21(10-11):559-73 (Pubitemid 50005007)
-
(2007)
Journal of Computer-Aided Molecular Design
, vol.21
, Issue.10-11
, pp. 559-573
-
-
Gleeson, M.P.1
Davis, A.M.2
Chohan, K.K.3
Paine, S.W.4
Boyer, S.5
Gavaghan, C.L.6
Arnby, C.H.7
Kankkonen, C.8
Albertson, N.9
-
87
-
-
6044232040
-
Validation of model of cytochrome P450 2D6: An in silico tool for predicting metabolism and inhibition
-
DOI 10.1021/jm049934e
-
Kemp CA, Flanagan JU, van Eldik AJ, et al. Validation of model of cytochrome P450 2D6: an in silico tool for predicting metabolism and inhibition. J Med Chem 2004;47(22):5340-6 (Pubitemid 39382784)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.22
, pp. 5340-5346
-
-
Kemp, C.A.1
Flanagan, J.U.2
Van Eldik, A.J.3
Marechal, J.-D.4
Wolf, C.R.5
Roberts, G.C.K.6
Paine, M.J.I.7
Sutcliffe, M.J.8
-
88
-
-
77954889093
-
Computational prediction of binding affinity for CYP1A2-ligand complexes using empirical free energy calculations
-
Vasanthanathan P, Olsen L, Jorgensen FS, et al. Computational prediction of binding affinity for CYP1A2-ligand complexes using empirical free energy calculations. Drug Metab Dispos 2010;38(8):1347-54
-
(2010)
Drug Metab Dispos
, vol.38
, Issue.8
, pp. 1347-54
-
-
Vasanthanathan, P.1
Olsen, L.2
Jorgensen, F.S.3
-
89
-
-
0035065393
-
Competitive CYP2C9 inhibitors: Enzyme inhibition studies, protein homology modeling, and three-dimensional quantitative structure-activity relationship analysis
-
Afzelius L, Zamora I, Ridderstrom M, et al. Competitive CYP2C9 inhibitors: enzyme inhibition studies, protein homology modeling, and three-dimensional quantitative structure-activity relationship analysis. Mol Pharmacol 2001;59(4):909-19 (Pubitemid 32274021)
-
(2001)
Molecular Pharmacology
, vol.59
, Issue.4
, pp. 909-919
-
-
Afzelius, L.1
Zamora, I.2
Ridderstrom, M.3
Andersson, T.B.4
Karlen, A.5
Masimirembwa, C.M.6
-
90
-
-
54249099193
-
Generalized proteochemometric model of multiple cytochrome p450 enzymes and their inhibitors
-
Kontijevskis A, Komorowski J, Wikberg JE. Generalized proteochemometric model of multiple cytochrome p450 enzymes and their inhibitors. J Chem Inf Model 2008;48(9):1840-50
-
(2008)
J Chem Inf Model
, vol.48
, Issue.9
, pp. 1840-50
-
-
Kontijevskis, A.1
Komorowski, J.2
Wikberg, J.E.3
-
91
-
-
70350513549
-
Classification of cytochrome P450 inhibitors with respect to binding free energy and pIC50 using common molecular descriptors
-
Dagliyan O, Kavakli IH, Turkay M. Classification of cytochrome P450 inhibitors with respect to binding free energy and pIC50 using common molecular descriptors. J Chem Inf Model 2009;49(10):2403-11
-
(2009)
J Chem Inf Model
, vol.49
, Issue.10
, pp. 2403-11
-
-
Dagliyan, O.1
Kavakli, I.H.2
Turkay, M.3
-
92
-
-
33845772311
-
Synergistic use of compound properties and docking scores in neural network modeling of CYP2D6 binding: Predicting affinity and conformational sampling
-
DOI 10.1021/ci600267k
-
Bazeley PS, Prithivi S, Struble CA, et al. Synergistic use of compound properties and docking scores in neural network modeling of CYP2D6 binding: predicting affinity and conformational sampling. J Chem Inf Model 2006;46(6):2698-708 (Pubitemid 46008139)
-
(2006)
Journal of Chemical Information and Modeling
, vol.46
, Issue.6
, pp. 2698-2708
-
-
Bazeley, P.S.1
Prithivi, S.2
Struble, C.A.3
Povinelli, R.J.4
Sem, D.S.5
-
93
-
-
61449219789
-
Development of a new predictive model for interactions with human cytochrome P450 2A6 using pharmacophore ensemble/support vector machine (PhE/SVM) approach
-
Leong MK, Chen YM, Chen HB, et al. Development of a new predictive model for interactions with human cytochrome P450 2A6 using pharmacophore ensemble/support vector machine (PhE/SVM) approach. Pharm Res 2009;26(4):987-1000
-
(2009)
Pharm Res
, vol.26
, Issue.4
, pp. 987-1000
-
-
Leong, M.K.1
Chen, Y.M.2
Chen, H.B.3
-
94
-
-
0142042800
-
Prediction of human drug metabolizing enzyme induction
-
DOI 10.2174/1389200033489352
-
Mankowski DC, Ekins S. Prediction of human drug metabolizing enzyme induction. Curr Drug Metab 2003;4(5):381-91 (Pubitemid 37279363)
-
(2003)
Current Drug Metabolism
, vol.4
, Issue.5
, pp. 381-391
-
-
Mankowski, D.C.1
Ekins, S.2
-
95
-
-
0036643983
-
Quantitative structure-activity relationships for inducers of cytochromes P450 and nuclear receptor ligands involved in P450 regulation within the CYP1, CYP2, CYP3 and CYP4 families
-
DOI 10.1016/S0300-483X(02)00135-X, PII S0300483X0200135X
-
Lewis DF, Jacobs MN, Dickins M, et al. Quantitative structure-activity relationships for inducers of cytochromes P450 and nuclear receptor ligands involved in P450 regulation within the CYP1, CYP2, CYP3 and CYP4 families. Toxicology 2002;176(1-2):51-7 (Pubitemid 34626730)
-
(2002)
Toxicology
, vol.176
, Issue.1-2
, pp. 51-57
-
-
Lewis, D.F.V.1
Jacobs, M.N.2
Dickins, M.3
Lake, B.G.4
-
96
-
-
0037161586
-
5D-QSAR: The key for simulating induced fit?
-
DOI 10.1021/jm011005p
-
Vedani A, Dobler M. 5D-QSAR: the key for simulating induced fit? J Med Chem 2002;45(11):2139-49 (Pubitemid 34525794)
-
(2002)
Journal of Medicinal Chemistry
, vol.45
, Issue.11
, pp. 2139-2149
-
-
Vedani, A.1
Dobler, M.2
-
97
-
-
0036136534
-
A pharmacophore for human pregnane X receptor ligands
-
DOI 10.1124/dmd.30.1.96
-
Ekins S, Erickson JA. A pharmacophore for human pregnane X receptor ligands. Drug Metab Dispos 2002;30(1):96-9 (Pubitemid 34016946)
-
(2002)
Drug Metabolism and Disposition
, vol.30
, Issue.1
, pp. 96-99
-
-
Ekins, S.1
Erickson, J.A.2
-
98
-
-
5444269348
-
In silico tools to aid risk assessment of endocrine disrupting chemicals
-
DOI 10.1016/j.tox.2004.06.036, PII S0300483X04003646
-
Jacobs MN. In silico tools to aid risk assessment of endocrine disrupting chemicals. Toxicology 2004;205(1-2):43-53 (Pubitemid 39359150)
-
(2004)
Toxicology
, vol.205
, Issue.SPEC. ISS.
, pp. 43-53
-
-
Jacobs, M.N.1
-
99
-
-
0142106465
-
Molecular determinants of steroid inhibition for the mouse constitutive androstane receptor
-
DOI 10.1021/jm030861t
-
Jyrkkarinne J, Makinen J, Gynther J, et al. Molecular determinants of steroid inhibition for the mouse constitutive androstane receptor. J Med Chem 2003;46(22):4687-95 (Pubitemid 37279132)
-
(2003)
Journal of Medicinal Chemistry
, vol.46
, Issue.22
, pp. 4687-4695
-
-
Jyrkkarinne, J.1
Makinen, J.2
Gynther, J.3
Savolainen, H.4
Poso, A.5
Honkakoski, P.6
-
100
-
-
56749177315
-
Insights into ligand-elicited activation of human constitutive androstane receptor based on novel agonists and three-dimensional quantitative structure-activity relationship
-
Jyrkkarinne J, Windshugel B, Ronkko T, et al. Insights into ligand-elicited activation of human constitutive androstane receptor based on novel agonists and three-dimensional quantitative structure-activity relationship. J Med Chem 2008;51(22):7181-92
-
(2008)
J Med Chem
, vol.51
, Issue.22
, pp. 7181-92
-
-
Jyrkkarinne, J.1
Windshugel, B.2
Ronkko, T.3
-
101
-
-
33845870927
-
In silico prediction of pregnane X receptor activators by machine learning approaches
-
DOI 10.1124/mol.106.027623
-
Ung CY, Li H, Yap CW, et al. In silico prediction of pregnane X receptor activators by machine learning approaches. Mol Pharmacol 2007;71(1):158-68 (Pubitemid 46020985)
-
(2007)
Molecular Pharmacology
, vol.71
, Issue.1
, pp. 158-168
-
-
Ung, C.Y.1
Li, H.2
Yap, C.W.3
Chen, Y.Z.4
-
102
-
-
47949086965
-
Machine learning methods and docking for predicting human pregnane X receptor activation
-
Khandelwal A, Krasowski MD, Reschly EJ, et al. Machine learning methods and docking for predicting human pregnane X receptor activation. Chem Res Toxicol 2008;21(7):1457-67
-
(2008)
Chem Res Toxicol
, vol.21
, Issue.7
, pp. 1457-67
-
-
Khandelwal, A.1
Krasowski, M.D.2
Reschly, E.J.3
-
103
-
-
61349196018
-
Hybrid scoring and classification approaches to predict human pregnane X receptor activators
-
Kortagere S, Chekmarev D, Welsh WJ, et al. Hybrid scoring and classification approaches to predict human pregnane X receptor activators. Pharm Res 2009;26(4):1001-11
-
(2009)
Pharm Res
, vol.26
, Issue.4
, pp. 1001-11
-
-
Kortagere, S.1
Chekmarev, D.2
Welsh, W.J.3
-
104
-
-
67349165556
-
Understanding nuclear receptors using computational methods
-
Ai N, Krasowski MD, Welsh WJ, et al. Understanding nuclear receptors using computational methods. Drug Discov Today 2009;14(9-10):486-94
-
(2009)
Drug Discov Today
, vol.14
, Issue.9-10
, pp. 486-94
-
-
Ai, N.1
Krasowski, M.D.2
Welsh, W.J.3
-
105
-
-
74549144266
-
Challenges predicting ligand-receptor interactions of promiscuous proteins: The nuclear receptor PXR
-
Ekins S, Kortagere S, Iyer M, et al. Challenges predicting ligand-receptor interactions of promiscuous proteins: the nuclear receptor PXR. PLoS Comput Biol 2009;5(12):e1000594
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.12
-
-
Ekins, S.1
Kortagere, S.2
Iyer, M.3
-
106
-
-
0025150366
-
Theoretical studies on cytochrome P-450 mediated hydroxylation: A predictive model for hydrogen atom abstractions
-
Korzekwa KR, Jones JP, Gillette JR. Theoretical studies on cytochrome P-450 mediated hydroxylation: a predictive model for hydrogen atom abstractions. J Am Chem Soc 1990;112(19):7042-6 (Pubitemid 20319136)
-
(1990)
Journal of the American Chemical Society
, vol.112
, Issue.19
, pp. 7042-7046
-
-
Korzekwa, K.R.1
Jones, J.P.2
Gillette, J.R.3
-
107
-
-
0036136527
-
Computational models for cytochrome P450: A predictive electronic model for aromatic oxidation and hydrogen atom abstraction
-
DOI 10.1124/dmd.30.1.7
-
Jones JP, Mysinger M, Korzekwa KR. Computational models for cytochrome P450: a predictive electronic model for aromatic oxidation and hydrogen atom abstraction. Drug Metab Dispos 2002;30(1):7-12 (Pubitemid 34016934)
-
(2002)
Drug Metabolism and Disposition
, vol.30
, Issue.1
, pp. 7-12
-
-
Jones, J.P.1
Mysinger, M.2
Korzekwa, K.R.3
-
108
-
-
0037431382
-
A model for predicting likely sites of CYP3A4-mediated metabolism on drug-like molecules
-
DOI 10.1021/jm020400s
-
Singh SB, Shen LQ, Walker MJ, et al. A model for predicting likely sites of CYP3A4-mediated metabolism on drug-like molecules. J Med Chem 2003;46(8):1330-6 (Pubitemid 36512698)
-
(2003)
Journal of Medicinal Chemistry
, vol.46
, Issue.8
, pp. 1330-1336
-
-
Singh, S.B.1
Shen, L.Q.2
Walker, M.J.3
Sheridan, R.P.4
-
109
-
-
34447515639
-
Empirical regioselectivity models for human cytochromes P450 3A4, 2D6, and 2C9
-
DOI 10.1021/jm0613471
-
Sheridan RP, Korzekwa KR, Torres RA, et al. Empirical regioselectivity models for human cytochromes P450 3A4, 2D6, and 2C9. J Med Chem 2007;50(14):3173-84 (Pubitemid 47065966)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.14
, pp. 3173-3184
-
-
Sheridan, R.P.1
Korzekwa, K.R.2
Torres, R.A.3
Walker, M.J.4
-
110
-
-
65549103878
-
Site of metabolism prediction for six biotransformations mediated by cytochromes P450
-
Zheng M, Luo X, Shen Q, et al. Site of metabolism prediction for six biotransformations mediated by cytochromes P450. Bioinformatics 2009;25(10):1251-8
-
(2009)
Bioinformatics
, vol.25
, Issue.10
, pp. 1251-8
-
-
Zheng, M.1
Luo, X.2
Shen, Q.3
-
111
-
-
0030036211
-
Molecular modelling of CYP1A subfamily members based on an alignment with CYP102: Rationalization of CYP1A substrate specificity in terms of active site amino acid residues
-
Lewis DF, Lake BG. Molecular modelling of CYP1A subfamily members based on an alignment with CYP102: rationalization of CYP1A substrate specificity in terms of active site amino acid residues. Xenobiotica 1996;26(7):723-53 (Pubitemid 26233025)
-
(1996)
Xenobiotica
, vol.26
, Issue.7
, pp. 723-753
-
-
Lewis, D.F.V.1
Lake, B.G.2
-
112
-
-
0029805701
-
Molecular modelling of CYP3A4 from an alignment with CYP102: Identification of key interactions between putative active site residues and CYP3A-specific chemicals
-
Lewis DF, Eddershaw PJ, Goldfarb PS, et al. Molecular modelling of CYP3A4 from an alignment with CYP102: identification of key interactions between putative active site residues and CYP3A-specific chemicals. Xenobiotica 1996;26(10):1067-86 (Pubitemid 26360297)
-
(1996)
Xenobiotica
, vol.26
, Issue.10
, pp. 1067-1086
-
-
Lewis, D.F.V.1
Eddershaw, P.J.2
Goldfarb, P.S.3
Tarbit, M.H.4
-
113
-
-
0030914738
-
Molecular modelling of cytochrome P4502D6 (CYP2D6) based on an alignment with CYP102: Structural studies on specific CYP2D6 substrate metabolism
-
Lewis DF, Eddershaw PJ, Goldfarb PS, et al. Molecular modelling of cytochrome P4502D6 (CYP2D6) based on an alignment with CYP102: structural studies on specific CYP2D6 substrate metabolism. Xenobiotica 1997;27(4):319-39 (Pubitemid 27199379)
-
(1997)
Xenobiotica
, vol.27
, Issue.4
, pp. 319-339
-
-
Lewis, D.F.V.1
Eddershaw, P.J.2
Goldfarb, P.S.3
Tarbit, M.H.4
-
114
-
-
0029995711
-
A three-dimensional protein model for human cytochrome P450 2D6 based on the crystal structures of P450 101, P450 102, and P450 108
-
DOI 10.1021/tx960003i
-
de Groot MJ, Vermeulen NP, Kramer JD, et al. A three-dimensional protein model for human cytochrome P450 2D6 based on the crystal structures of P450 101, P450 102, and P450 108. Chem Res Toxicol 1996;9(7):1079-91 (Pubitemid 26347960)
-
(1996)
Chemical Research in Toxicology
, vol.9
, Issue.7
, pp. 1079-1091
-
-
De Groot, M.J.1
Vermeulen, N.P.E.2
Kramer, J.D.3
Van Acker, F.A.A.4
Donne-Op Den Kelder, G.M.5
-
115
-
-
0029914807
-
A model for human cytochrome P450 2D6 based on homology modeling and NMR studies of substrate binding
-
Modi S, Paine MJ, Sutcliffe MJ, et al. A model for human cytochrome P450 2D6 based on homology modeling and NMR studies of substrate binding. Biochemistry 1996;35(14):4540-50
-
(1996)
Biochemistry
, vol.35
, Issue.14
, pp. 4540-50
-
-
Modi, S.1
Paine, M.J.2
Sutcliffe, M.J.3
-
116
-
-
0033529017
-
Novel approach to predicting P450-mediated drug metabolism: Development of a combined protein and pharmacophore model for CYP2D6
-
DOI 10.1021/jm981118h
-
de Groot MJ, Ackland MJ, Horne VA, et al. Novel approach to predicting P450-mediated drug metabolism: development of a combined protein and pharmacophore model for CYP2D6. J Med Chem 1999;42(9):1515-24 (Pubitemid 29226723)
-
(1999)
Journal of Medicinal Chemistry
, vol.42
, Issue.9
, pp. 1515-1524
-
-
De Groot, M.J.1
Ackland, M.J.2
Horne, V.A.3
Alex, A.A.4
Jones, B.C.5
-
117
-
-
0033533750
-
A novel approach to predicting P450 mediated drug metabolism. CYP2D6 catalyzed N-dealkylation reactions and qualitative metabolite predictions using a combined protein and pharmacophore model for CYP2D6
-
DOI 10.1021/jm991058v
-
de Groot MJ, Ackland MJ, Horne VA, et al. A novel approach to predicting P450 mediated drug metabolism. CYP2D6 catalyzed N-dealkylation reactions and qualitative metabolite predictions using a combined protein and pharmacophore model for CYP2D6. J Med Chem 1999;42(20):4062-70 (Pubitemid 29483023)
-
(1999)
Journal of Medicinal Chemistry
, vol.42
, Issue.20
, pp. 4062-4070
-
-
De Groot, M.J.1
Ackland, M.J.2
Horne, V.A.3
Alex, A.A.4
Jones, B.C.5
-
118
-
-
0037046521
-
Development of a combined protein and pharmacophore model for cytochrome P450 2C9
-
DOI 10.1021/jm0110791
-
de Groot MJ, Alex AA, Jones BC. Development of a combined protein and pharmacophore model for cytochrome P450 2C9. J Med Chem 2002;45(10):1983-93 (Pubitemid 34477712)
-
(2002)
Journal of Medicinal Chemistry
, vol.45
, Issue.10
, pp. 1983-1993
-
-
De Groot, M.J.1
Alex, A.A.2
Jones, B.C.3
-
119
-
-
0038440502
-
Predicting drug metabolism: A site of metabolism prediction tool applied to the cytochrome P450 2C9
-
DOI 10.1021/jm021104i
-
Zamora I, Afzelius L, Cruciani G. Predicting drug metabolism: a site of metabolism prediction tool applied to the cytochrome P450 2C9. J Med Chem 2003;46(12):2313-24 (Pubitemid 36637916)
-
(2003)
Journal of Medicinal Chemistry
, vol.46
, Issue.12
, pp. 2313-2324
-
-
Zamora, I.1
Afzelius, L.2
Cruciani, G.3
-
120
-
-
61949197836
-
Virtual screening and prediction of site of metabolism for cytochrome P450 1A2 ligands
-
Vasanthanathan P, Hritz J, Taboureau O, et al. Virtual screening and prediction of site of metabolism for cytochrome P450 1A2 ligands. J Chem Inf Model 2009;49(1):43-52
-
(2009)
J Chem Inf Model
, vol.49
, Issue.1
, pp. 43-52
-
-
Vasanthanathan, P.1
Hritz, J.2
Taboureau, O.3
-
121
-
-
73449135498
-
Fast prediction of cytochrome P450 mediated drug metabolism
-
Rydberg P, Vasanthanathan P, Oostenbrink C, et al. Fast prediction of cytochrome P450 mediated drug metabolism. ChemMedChem 2009;4(12):2070-9
-
(2009)
ChemMedChem
, vol.4
, Issue.12
, pp. 2070-9
-
-
Rydberg, P.1
Vasanthanathan, P.2
Oostenbrink, C.3
-
123
-
-
0028534522
-
META. 2. A dictionary model of mammalian xenobiotic metabolism
-
Talafous J, Sayre LM, Mieyal JJ, et al. META. 2. A dictionary model of mammalian xenobiotic metabolism. J Chem Inf Comput Sci 1994;34(6):1326-33
-
(1994)
J Chem Inf Comput Sci
, vol.34
, Issue.6
, pp. 1326-33
-
-
Talafous, J.1
Sayre, L.M.2
Mieyal, J.J.3
-
124
-
-
0028534521
-
META. 1. A program for the evaluation of metabolic transformation of chemicals
-
Klopman G, Dimayuga M, Talafous J. META. 1. A program for the evaluation of metabolic transformation of chemicals. J Chem Inf Comput Sci 1994;34(6):1320-5
-
(1994)
J Chem Inf Comput Sci
, vol.34
, Issue.6
, pp. 1320-5
-
-
Klopman, G.1
Dimayuga, M.2
Talafous, J.3
-
125
-
-
3242722209
-
Predicting drug metabolism: Concepts and challenges
-
Testa B, Balmat A-L, Long A. Predicting drug metabolism: concepts and challenges. Pure Appl Chem 2004;76(5):907-14
-
(2004)
Pure Appl Chem
, vol.76
, Issue.5
, pp. 907-14
-
-
Testa, B.1
Balmat, A.-L.2
Long, A.3
-
126
-
-
27444434892
-
MetaSite: Understanding metabolism in human cytochromes from the perspective of the chemist
-
DOI 10.1021/jm050529c
-
Cruciani G, Carosati E, De Boeck B, et al. MetaSite: understanding metabolism in human cytochromes from the perspective of the chemist. J Med Chem 2005;48(22):6970-9 (Pubitemid 41533118)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.22
, pp. 6970-6979
-
-
Cruciani, G.1
Carosati, E.2
De Boeck, B.3
Ethirajulu, K.4
Mackie, C.5
Howe, T.6
Vianello, R.7
-
127
-
-
78449309981
-
The SMARTCyp cytochrome P450 metabolism prediction server
-
Rydberg P, Gloriam DE, Olsen L. The SMARTCyp cytochrome P450 metabolism prediction server. Bioinformatics 2010;26(23):2988-9
-
(2010)
Bioinformatics
, vol.26
, Issue.23
, pp. 2988-9
-
-
Rydberg, P.1
Gloriam, D.E.2
Olsen, L.3
-
128
-
-
79951887512
-
Casopitant: In-vitro data and SimCypTM simulation to predict in-vivo metabolic interactions involving Cytochrome P450 3A4
-
Motta P, Pons N, Pagliarusco S, et al. Casopitant: in-vitro data and SimCypTM simulation to predict in-vivo metabolic interactions involving Cytochrome P450 3A4. Drug Metab Dispos 2011;39(3):363-72
-
(2011)
Drug Metab Dispos
, vol.39
, Issue.3
, pp. 363-72
-
-
Motta, P.1
Pons, N.2
Pagliarusco, S.3
-
129
-
-
73949093900
-
VirtualToxLab - In silico prediction of the toxic (endocrinedisrupting) potential of drugs, chemicals and natural products. Two years and 2,000 compounds of experience: A progress report
-
Vedani A, Smiesko M, Spreafico M, et al. VirtualToxLab - in silico prediction of the toxic (endocrinedisrupting) potential of drugs, chemicals and natural products. Two years and 2,000 compounds of experience: a progress report. ALTEX 2009;26(3):167-76
-
(2009)
ALTEX
, vol.26
, Issue.3
, pp. 167-76
-
-
Vedani, A.1
Smiesko, M.2
Spreafico, M.3
-
130
-
-
77953945535
-
Comparison of machine learning algorithms to predict ADME properties using chemical descriptors and molecular fingerprints
-
Bryn Mawr College; Philadelphia PA
-
Klon AE. Comparison of machine learning algorithms to predict ADME properties using chemical descriptors and molecular fingerprints. eChemInfo. Bryn Mawr College; Philadelphia, PA: 2008
-
(2008)
EChemInfo
-
-
Klon, A.E.1
-
131
-
-
77958493840
-
A novel framework for predicting in vivo toxicities from in vitro data using optimal methods for dense and sparse matrix reordering and logistic regression
-
DiMaggio PA Jr, Subramani A, Judson RS, et al. A novel framework for predicting in vivo toxicities from in vitro data using optimal methods for dense and sparse matrix reordering and logistic regression. Toxicol Sci 2010;118(1):251-65
-
(2010)
Toxicol Sci
, vol.118
, Issue.1
, pp. 251-65
-
-
DiMaggio Jr., P.A.1
Subramani, A.2
Judson, R.S.3
|