Assessing mutant huntingtin fragment and polyglutamine aggregation by atomic force microscopy

Methods

Volumn 53, Issue 3, 2011, Pages 275-284

  Burke, Kathleen A ^a   Godbey, Jordan ^a   Legleiter, Justin ^a  

^a WEST VIRGINIA UNIVERSITY   (United States)

Author keywords

Atomic force microscopy; Huntington's disease; Neurodegenerative disease; Polyglutamine; Protein aggregation

Indexed keywords

HUNTINGTIN; POLYGLUTAMINE;

AMINO TERMINAL SEQUENCE; ARTICLE; ATOMIC FORCE MICROSCOPY; CELL INCLUSION; DEGENERATIVE DISEASE; HUNTINGTON CHOREA; PRIORITY JOURNAL; PROTEIN AGGREGATION; PROTEIN ANALYSIS;

AMINO ACID SEQUENCE; HUMANS; HUNTINGTON DISEASE; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY, ATOMIC FORCE; MOLECULAR SEQUENCE DATA; NERVE TISSUE PROTEINS; NUCLEAR PROTEINS; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS; TIME-LAPSE IMAGING;

EID: 79952193876     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2010.12.028     Document Type: Article

References (105)

1. Crowther D.C. Human Mut. 2002, 20:1-14.
2. Muchowski P. Neuron 2002, 35:9-12.
3. Nakamura T., Lipton S. Apoptosis 2009, 14:455-468.
4. Žerovnik E. Eur. J. Biochem. 2002, 269:3362-3371.
5. Arrasate M., Mitra S., Schweitzer E.S., Segal M.R., Finkbeiner S. Nature 2004, 431:805-810.
6. Cleary J.P., Walsh D.M., Hofmeister J.J., Shankar G.M., Kuskowski M.A., Selkoe D.J., Ashe K.H. Nat. Neurosci. 2005, 8:79-84.
7. Kayed R., Head E., Thompson J.L., McIntire T.M., Milton S.C., Cotman C.W., Glabe C.G. Science 2003, 300:486-489.
8. Lesné S., Koh M.T., Kotilinek L., Kayed R., Glabe C.G., Yang A., Gallagher M., Ashe K.H. Nature 2006, 440:352-357.
9. Huntington's Disease Collaborative Research Group, Cell 72 (1993) 971-83.
10. DiFiglia M., Sapp E., Chase K.O., Davies S.W., Bates G.P., Vonsattel J.P., Aronin N. Science 1997, 277:1990-1993.
11. Zoghbi H.Y., Orr H.T. Annu. Rev. Neurosci. 2000, 23:217-247.
12. Penney J.B., Vonsattel J.-P., Macdonald M.E., Gusella J.F., Myers R.H. Ann. Neurol. 1997, 41:689-692.
13. Snell R.G., MacMillan J.C., Cheadle J.P., Fenton I., Lazarou L.P., Davies P., MacDonald M.E., Gusella J.F., Harper P.S., Shaw D.J. Nat. Genet. 1993, 4:393-397.
14. Siwach P., Sengupta S., Parihar R., Ganesh S. Biochem. Biophys. Res. Commun. 2009, 380:382-386.
15. Zhang H., Li Q., Graham R.K., Slow E., Hayden M.R., Bezprozvanny I. Neurobiol. Dis. 2008, 31:80-88.
16. Diguet E., Petit F., Escartin C., Cambon K., Bizat N., Dufour N.l., Hantraye P., Dãglon N., Brouillet E. PLoS ONE 2009, 4:e4637.
17. Saudou F., Finkbeiner S., Devys D., Greenberg M.E. Cell 1998, 95:55-66.
18. Chen S., Berthelier V., Hamilton J.B., O'Nuallain B., Wetzel R. Biochemistry 2002, 41:7391-7399.
19. Scherzinger E., Lurz R., Turmaine M., Mangiarini L., Hollenbach B., Hasenbank R., Bates G., Davies S., Lehrach H., Wanker E. Cell 1997, 90:549-558.
20. Scherzinger E., Sittler A., Schweiger K., Heiser V., Lurz R., Hasenbank R., Bates G.P., Lehrach H., Wanker E.E. Proc. Natl. Acad. Sci. USA 1999, 96:4604-4609.
21. Hackam A.S., Singaraja R., Wellington C.L., Metzler M., McCutcheon K., Zhang T., Kalchman M., Hayden M.R. J. Cell Biol. 1998, 141:1097-1105.
22. Lunkes A., Mandel J.L. Hum. Mol. Genet. 1998, 7:1355-1361.
23. Poirier M.A., Li H., Macosko J., Cai S., Amzel M., Ross C.A. J. Biol. Chem. 2002, 277:41032-41037.
24. Tanaka M., Morishima I., Akagi T., Hashikawa T., Nukina N. J. Biol. Chem. 2001, 276:45470-45475.
25. Wacker J.L., Zareie M.H., Fong H., Sarikaya M., Muchowski P.J. Nat. Struct. Mol. Biol. 2004, 11:1215-1222.
26. Blackley H.K., Patel N., Davies M.C., Roberts C.J., Tendler S.J., Wilkinson M.J., Williams P.M. Exp. Neurol. 1999, 158:437-443.
27. Blackley H.K.L., Sanders G.H.W., Davies M.C., Roberts C.J., Tendler S.J.B., Wilkinson M.J. J. Mol. Biol. 2000, 298:833-840.
28. Kowalewski T., Holtzman D.M. Proc. Natl. Acad. Sci. USA 1999, 96:3688-3693.
29. Legleiter J., Czilli D., Demattos R., Gitter B., Holtzman D., Kowalewski T. J. Mol. Biol. 2004, 335:997-1006.
30. Legleiter J., Lotz G.P., Miller J., Ko J., Ng C., Williams G.L., Finkbeiner S., Patterson P.H., Muchowski P.J. J. Biol. Chem. 2009, 284:21647-21658.
31. Legleiter J., Mitchell E., Lotz G.P., Sapp E., Ng C., DiFiglia M., Thompson L.M., Muchowski P.J. J. Biol. Chem. 2010, 285:14777-14790.
32. Yip C.M., McLaurin J. Biophys. J. 2001, 80:1359-1371.
33. Harper J.D., Wong S.S., Lieber C.M., Lansbury P.T. Chem. Biol. 1997, 4:119-125.
34. Harper J.D., Wong S.S., Lieber C.M., Lansbury P.T. Biochemistry 1999, 38:8972-8980.
35. Kellermayer M.S.Z., Karsai Ã., Benke M., Soos K., Penke B. Proc. Nat. Acad. Sci. USA 2008, 105:141-144.
36. Stine W.B., Dahlgren K.N., Krafft G.A., LaDu M.J. J. Biol. Chem. 2003, 278:11612-11622.
37. Binnig G., Quate C.F., Gerber C. Phys. Rev. Lett. 1986, 56:930-933.
38. Horton M., Charras G., Ballestrem C., Lehenkari P. Single Mol. 2000, 1:135-137.
39. Kassies R., Werf K.O.V.D., Lenferink A., Hunter C.N., Olsen J.D., Subramaniam V., Otto C. J. Microsc. 2005, 217:109-116.
40. P.J. Pifer, E.A. Yates, J. Legleiter. PLoS ONE (in press).
41. Yip C.M., Darabie A.A., McLaurin J. J. Mol. Biol. 2002, 318:97-107.
42. Yip C.M., Elton E.A., Darabie A.A., Morrison M.R., McLaurin J. J. Mol. Biol. 2001, 311:723-734.
43. Cheng J.S., Dubal D.B., Kim D.H., Legleiter J., Cheng I.H., Yu G.Q., Tesseur I., Wyss-Coray T., Bonaldo P., Mucke L. Nat. Neurosci. 2009, 12:119-121.
44. Relini A., Canale C., De Stefano S., Rolandi R., Giorgetti S., Stoppini M., Rossi A., Fogolari F., Corazza A., Esposito G., Gliozzi A., Bellotti V. J. Biol. Chem. 2006, 281:16521-16529.
45. Shtilerman M.D., Ding T.T., Lansbury P.T. Biochemistry 2002, 41:3855-3860.
46. Putman C.A., van der Werf K.O., de Grooth B.G., van Hulst N.F., Greve J. Biophys. J. 1994, 67:1749-1753.
47. Espenel C., Giocondi M.-C., Seantier B., Dosset P., Milhiet P.-E., Le C. Grimellec, Ultramicroscopy 2008, 108:1174-1180.
48. Duman M., et al. Nanotechnology 2010, 21:115504.
49. Rotsch C., Radmacher M. Biophys. J. 2000, 78:520-535.
50. Pesen D., Hoh J.H. Biophys. J. 2005, 88:670-679.
51. Legleiter J., Demattos R., Holtzman D., Kowalewski T., Colloid J. Int. Sci. 2004, 278:96-106.
52. Villarrubia J.S. Natl. Inst. Stand. Technol. 1997, 102:425.
53. Muchowski P.J., Schaffar G., Sittler A., Wanker E.E., Hayer-Hartl M.K., Hartl F.U. Proc. Natl. Acad. Sci. USA 2000, 97:7841-7846.
54. Chen S., Wetzel R. Protein Sci. 2001, 10:887-891.
55. Atwal R.S., Xia J., Pinchev D., Taylor J., Epand R.M., Truant R. Hum. Mol. Genet. 2007, 16:2600-2615.
56. Trettel F., Rigamonti D., Hilditch-Maguire P., Wheeler V.C., Sharp A.H., Persichetti F., Cattaneo E., MacDonald M.E. Hum. Mol. Genet. 2000, 9:2799-2809.
57. Thakur A.K., Jayaraman M., Mishra R., Thakur M., Chellgren V.M., Byeon I.-J.L., Anjum D.H., Kodali R., Creamer T.P., Conway J.F., Gronenborn A.M., Wetzel R. Nat. Struct. Mol. Biol. 2009, 16:380-389.
58. Williamson T.E., Vitalis A., Crick S.L., Pappu R.V. J. Mol. Biol. 2010, 396:1295-1309.
59. Squire P.G., Himmel M.E. Arch. Biochem. Biophys. 1979, 196:165-177.
60. Gekko K., Noguchi H. J. Phys. Chem. 1979, 83:2706-2714.
61. Zhu M., Souillac P.O., Ionescu-Zanetti C., Carter S.A., Fink A.L. J. Biol. Chem. 2002, 277:50914-50922.
62. Chen S., Berthelier V., Yang W., Wetzel R. J. Mol. Biol. 2001, 311:173-182.
63. Chen S., Frank A.F., Ronald W. Proc. Nat. Acad. Sci. USA 2002, 99:11884-11889.
64. Bernacki J.P., Murphy R.M. Biophys. J. 2009, 96:2871-2887.
65. Walters R.H., Murphy R.M. J. Mol. Biol. 2009, 393:978-992.
66. Nozaki K., Onodera O., Takano H., Tsuji S. Neuroreport 2001, 12:3357-3364.
67. La Spada A.R., Taylor J.P. Neuron 2003, 38:681-684.
68. Ignatova Z., Gierasch L.M. J. Biol. Chem. 2006, 281:12959-12967.
69. Menon R.P., Pastore A. Cell Mol. Life Sci. 2006, 63:1677-1685.
70. Bulone D., Masino L., Thomas D.J., San Biagio P.L., Pastore A. PLoS ONE 2006, 1:e111.
71. Bhattacharyya A., Thakur A.K., Chellgren V.M., Thiagarajan G., Williams A.D., Chellgren B.W., Creamer T.P., Wetzel R. J. Mol. Biol. 2006, 355:524-535.
72. Darnell G., Orgel J.P.R.O., Pahl R., Meredith S.C. J. Mol. Biol. 2007, 374:688-704.
73. Duennwald M.L., Jagadish S., Giorgini F., Muchowski P.J., Lindquist S. Proc. Nat. Acad. Sci. USA 2006, 103:11051-11056.
74. Duennwald M.L., Jagadish S., Muchowski P.J., Lindquist S. Proc. Nat. Acad. Sci. USA 2006, 103:11045-11050.
75. Hands S.L., Wyttenbach A. Acta Neuropathol. 2010, 120:419-437.
76. Aiken C.T., Steffan J.S., Guerrero C.M., Khashwji H., Lukacsovich T., Simmons D., Purcell J.M., Menhaji K., Zhu Y.Z., Green K., LaFerla F., Huang L., Thompson L.M., Marsh J.L. J. Biol. Chem. 2009, 284:29427-29436.
77. Rockabrand E., Slepko N., Pantalone A., Nukala V.N., Kazantsev A., Marsh J.L., Sullivan P.G., Steffan J.S., Sensi S.L., Thompson L.M. Hum. Mol. Genet. 2007, 16:61-77.
78. Stenoien D.L., Mielke M., Mancini M.A. Nat. Cell Biol. 2002, 4:806-810.
79. Xia J., Lee D.H., Taylor J., Vandelft M., Truant R. Hum. Mol. Genet. 2003, 12:1393-1403.
80. Raspe M., Gillis J., Krol H., Krom S., Bosch K., van Veen H., Reits E. J. Cell Sci. 2009, 122:3262-3271.
81. Humbert S., Bryson E.A., Cordelieres F.P., Connors N.C., Datta S.R., Finkbeiner S., Greenberg M.E., Saudou F. Dev. Cell 2002, 2:831-837.
82. De Rooij K., Dorsman J., Smoor M., Den Dunnen J., Van Ommen G. Hum. Mol. Genet. 1996, 5:1093-1099.
83. Kegel K.B., Sapp E., Yoder J., Cuiffo B., Sobin L., Kim Y.J., Qin Z.H., Hayden M.R., Aronin N., Scott D.L., Isenberg G., Goldmann W.H., DiFiglia M. J. Biol. Chem. 2005, 280:36464-36473.
84. Muchowski P., Ning K., D'Souza-Schorey C., Fields S. Proc. Nat. Acad. Sci. USA 2002, 99:727-732.
85. Parekh-Olmedo H., Wang J., Gusella J.F., Kmiec E.B. J. Mol. Neurosci. 2004, 24:257-267.
86. Kegel K.B., Sapp E., Alexander J., Valencia A., Reeves P., Li X., Masso N., Sobin L., Aronin N., DiFiglia M. J. Neurochem. 2009, 110:1585-1597.
87. Kegel K.B., Schewkunow V., Sapp E., Masso N., Wanker E.E., DiFiglia M., Goldmann W.H. Biochem. Biophys. Res. Commun. 2009, 387:472-475.
88. Suopanki J., Götz C., Lutsch G., Schiller J., Harjes P., Herrmann A., Wanker E.E. J. Neurochem. 2006, 96:870-884.
89. Muchowski P.J., Wacker J.L. Nat. Rev. Neurosci. 2005, 6:11-22.
90. Colby D.W., Chu Y., Cassady J.P., Duennwald M., Zazulak H., Webster J.M., Messer A., Lindquist S., Ingram V.M., Wittrup K.D. Proc. Nat. Acad. Sci. USA 2004, 101:17616-17621.
91. Khoshnan A., Ko J., Patterson P.H. Proc. Nat. Acad. Sci. USA 2002, 99:1002-1007.
92. Southwell A.L., Khoshnan A., Dunn D.E., Bugg C.W., Lo D.C., Patterson P.H. J. Neurosci. 2008, 28:9013-9020.
93. Southwell A.L., Ko J., Patterson P.H. J. Neurosci. 2009, 29:13589-13602.
94. Ehrnhoefer D.E., Duennwald M., Markovic P., Wacker J.L., Engemann S., Roark M., Legleiter J., Marsh J.L., Thompson L.M., Lindquist S., Muchowski P.J., Wanker E.E. Hum. Mol. Genet. 2006, 15:2743-2751.
95. Kvam E., Nannenga B.L., Wang M.S., Jia Z., Sierks M.R., Messer A. PLoS ONE 2009, 4:e5727.
96. Nannenga B.L., Zameer A., Sierks M.R. FEBS Lett. 2008, 582:517-522.
97. Liu R., Yuan B., Emadi S., Zameer A., Schulz P., McAllister C., Lyubchenko Y., Goud G., Sierks M.R. Biochemistry 2004, 43:6959-6967.
98. Zameer A., Schulz P., Wang M.S., Sierks M.R. Biochemistry 2006, 45:11532-11539.
99. Bett C.K., Ngunjiri J.N., Serem W.K., Fontenot K.R., Hammer R.P., McCarley R.L., Garno J.C., Chem A.C.S. J. Neurosci. 2010, 1:608-626.
100. Bett C.K., Serem W.K., Fontenot K.R., Hammer R.P., Garno J.C., Chem A.C.S. J. Neurosci. 2010, 1:661-678.
101. Arora A., Ha C., Park C.B. FEBS Lett. 2004, 564:121-125.
102. Kodali R., Williams A.D., Chemuru S., Wetzel R. J. Mol. Biol. 2010, 401:503-517.
103. Kodali R., Wetzel R. Curr. Opin. Struct. Biol. 2007, 17:48-57.
104. Sathasivam K., Lane A., Legleiter J., Warley A., Woodman B., Finkbeiner S., Paganetti P., Muchowski P.J., Wilson S., Bates G.P. Hum. Mol. Genet. 2010, 19:65-78.
105. Lotz G.P., Legleiter J., Aron R., Mitchell E.J., Huang S.Y., Ng C.P., Glabe C., Thompson L.M., Muchowski P.J. J. Biol. Chem. 2010, 285:38183-38193.