메뉴 건너뛰기




Volumn 16, Issue 6, 2006, Pages 713-722

Evolutionary turnover of mammalian transcription start sites

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; EVOLUTIONARY HOMOLOGY; GENE CONTROL; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC REGULATION; GENETIC TRANSCRIPTION; GENOME; HUMAN VERSUS ANIMAL COMPARISON; MOLECULAR EVOLUTION; ORTHOLOGY; PRIORITY JOURNAL; PROMOTER REGION; SEQUENCE HOMOLOGY; TISSUE SPECIFICITY; TRANSCRIPTION INITIATION SITE; TURNOVER TIME;

EID: 33744824906     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.5031006     Document Type: Article
Times cited : (68)

References (40)
  • 1
    • 0027141519 scopus 로고
    • Number of CpG islands and genes in human and mouse
    • Antequera, F. and Bird, A. 1993. Number of CpG islands and genes in human and mouse. Proc. Natl. Acad. Sci. 90: 11995-11999.
    • (1993) Proc. Natl. Acad. Sci. , vol.90 , pp. 11995-11999
    • Antequera, F.1    Bird, A.2
  • 2
    • 0035933788 scopus 로고    scopus 로고
    • Tissue-specific and ubiquitous promoters direct the expression of alternatively spliced transcripts from the calcitonin receptor gene
    • Anusaksathien, O., Laplace, C., Li, X., Ren, Y., Peng, L., Goldring, S.R., and Galson, D.L. 2001. Tissue-specific and ubiquitous promoters direct the expression of alternatively spliced transcripts from the calcitonin receptor gene. J. Biol. Chem. 276: 22663-22674.
    • (2001) J. Biol. Chem. , vol.276 , pp. 22663-22674
    • Anusaksathien, O.1    Laplace, C.2    Li, X.3    Ren, Y.4    Peng, L.5    Goldring, S.R.6    Galson, D.L.7
  • 3
    • 0033597864 scopus 로고    scopus 로고
    • Novel messenger RNA and alternative promoter for murine acetylcholinesterase
    • Atanasova, E., Chiappa, S., Wieben, E., and Brimijoin, S. 1999. Novel messenger RNA and alternative promoter for murine acetylcholinesterase. J. Biol. Chem. 274: 21078-21084.
    • (1999) J. Biol. Chem. , vol.274 , pp. 21078-21084
    • Atanasova, E.1    Chiappa, S.2    Wieben, E.3    Brimijoin, S.4
  • 4
    • 0030669466 scopus 로고    scopus 로고
    • The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila
    • Burke, T.W. and Kadonaga, J.T. 1997. The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila. Genes & Dev. 11: 3020-3031.
    • (1997) Genes & Dev. , vol.11 , pp. 3020-3031
    • Burke, T.W.1    Kadonaga, J.T.2
  • 5
    • 55449108386 scopus 로고    scopus 로고
    • Selective constraint on noncoding regions of hominid genomes
    • Bush, E.C. and Lahn, B.T. 2005. Selective constraint on noncoding regions of hominid genomes. PLoS Comput. Biol. 1: e73.
    • (2005) PLoS Comput. Biol. , vol.1
    • Bush, E.C.1    Lahn, B.T.2
  • 8
    • 0035986888 scopus 로고    scopus 로고
    • Evolution of transcription factor binding sites in mammalian gene regulatory regions: Conservation and turnover
    • Dermitzakis, E.T. and Clark, A.G. 2002. Evolution of transcription factor binding sites in mammalian gene regulatory regions: Conservation and turnover. Mol. Biol. Evol. 19: 1114-1121.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1114-1121
    • Dermitzakis, E.T.1    Clark, A.G.2
  • 9
    • 13144295005 scopus 로고    scopus 로고
    • Conserved non-genic sequences - An unexpected feature of mammalian genomes
    • Dermitzakis, E.T., Reymond, A., and Antonarakis, S.E. 2005. Conserved non-genic sequences - An unexpected feature of mammalian genomes. Nat. Rev. Genet. 6: 151-157.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 151-157
    • Dermitzakis, E.T.1    Reymond, A.2    Antonarakis, S.E.3
  • 10
    • 0034178257 scopus 로고    scopus 로고
    • Homology: A personal view on some of the problems
    • Fitch, W.M. 2000. Homology: A personal view on some of the problems. Trends Genet. 16: 227-231.
    • (2000) Trends Genet. , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 11
    • 0026454729 scopus 로고
    • Glutaric acidemia type II. Heterogeneity in β-oxidation flux, polypeptide synthesis, and complementary DNA mutations in the α subunit of electron transfer flavoprotein in eight patients
    • Freneaux, E., Sheffield, V.C., Molin, L., Shires, A., and Rhead, W.J. 1992. Glutaric acidemia type II. Heterogeneity in β-oxidation flux, polypeptide synthesis, and complementary DNA mutations in the α subunit of electron transfer flavoprotein in eight patients. J. Clin. Invest. 90: 1679-1686.
    • (1992) J. Clin. Invest. , vol.90 , pp. 1679-1686
    • Freneaux, E.1    Sheffield, V.C.2    Molin, L.3    Shires, A.4    Rhead, W.J.5
  • 12
    • 0023216891 scopus 로고
    • CpG islands in vertebrate genomes
    • Gardiner-Garden, M. and Frommer, M. 1987. CpG islands in vertebrate genomes. J. Mol. Biol. 196: 261-282.
    • (1987) J. Mol. Biol. , vol.196 , pp. 261-282
    • Gardiner-Garden, M.1    Frommer, M.2
  • 13
    • 33645472806 scopus 로고    scopus 로고
    • New technologies, new findings, and new concepts in the study of vertebrate cis-regulatory sequences
    • Gomez-Skarmeta, J.L., Lenhard, B., and Becker, T.S. 2006. New technologies, new findings, and new concepts in the study of vertebrate cis-regulatory sequences. Dev. Dyn. 235: 870-885.
    • (2006) Dev. Dyn. , vol.235 , pp. 870-885
    • Gomez-Skarmeta, J.L.1    Lenhard, B.2    Becker, T.S.3
  • 15
    • 23644460630 scopus 로고    scopus 로고
    • Tag-based approaches for transcriptome research and genome annotation
    • Harbers, M. and Carninci, P. 2005. Tag-based approaches for transcriptome research and genome annotation. Nat. Methods 2: 495-502.
    • (2005) Nat. Methods , vol.2 , pp. 495-502
    • Harbers, M.1    Carninci, P.2
  • 16
    • 0033822364 scopus 로고    scopus 로고
    • Large-scale human promoter mapping using CpG islands
    • Ioshikhes, I.P. and Zhang, M.Q. 2000. Large-scale human promoter mapping using CpG islands. Nat. Genet. 26: 61-63.
    • (2000) Nat. Genet. , vol.26 , pp. 61-63
    • Ioshikhes, I.P.1    Zhang, M.Q.2
  • 20
    • 15744388330 scopus 로고    scopus 로고
    • Evidence for widespread degradation of gene control regions in hominid genomes
    • Keightley, P.D., Lercher, M.J., and Eyre-Walker, A. 2005. Evidence for widespread degradation of gene control regions in hominid genomes. PLoS Biol. 3: e42.
    • (2005) PLoS Biol. , vol.3
    • Keightley, P.D.1    Lercher, M.J.2    Eyre-Walker, A.3
  • 21
    • 30044442791 scopus 로고    scopus 로고
    • Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
    • Kimura, K., Wakamatsu, A., Suzuki, Y., Ota, T., Nishikawa, T., Yamashita, R., Yamamoto, J., Sekine, M., Tsuritani, K., Wakaguri, H., et al. 2006. Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes. Genome Res. 16: 55-65.
    • (2006) Genome Res. , vol.16 , pp. 55-65
    • Kimura, K.1    Wakamatsu, A.2    Suzuki, Y.3    Ota, T.4    Nishikawa, T.5    Yamashita, R.6    Yamamoto, J.7    Sekine, M.8    Tsuritani, K.9    Wakaguri, H.10
  • 23
    • 0242317345 scopus 로고    scopus 로고
    • Complex controls: The role of alternative promoters in mammalian genomes
    • Landry, J.R., Mager, D.L., and Wilhelm, B.T. 2003. Complex controls: The role of alternative promoters in mammalian genomes. Trends Genet. 19: 640-648.
    • (2003) Trends Genet. , vol.19 , pp. 640-648
    • Landry, J.R.1    Mager, D.L.2    Wilhelm, B.T.3
  • 25
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • Levine, M. and Tjian, R. 2003. Transcription regulation and animal diversity. Nature 424: 147-151.
    • (2003) Nature , vol.424 , pp. 147-151
    • Levine, M.1    Tjian, R.2
  • 26
    • 0036105591 scopus 로고    scopus 로고
    • rVista for comparative sequence-based discovery of functional transcription factor binding sites
    • Loots, G.G., Ovcharenko, I., Pachter, L., Dubchak, I., and Rubin, E.M. 2002. rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 12: 832-839.
    • (2002) Genome Res. , vol.12 , pp. 832-839
    • Loots, G.G.1    Ovcharenko, I.2    Pachter, L.3    Dubchak, I.4    Rubin, E.M.5
  • 27
    • 0034598832 scopus 로고    scopus 로고
    • Evidence for stabilizing selection in a eukaryotic enhancer element
    • Ludwig, M.Z., Bergman, C., Patel, N.H., and Kreitman, M. 2000. Evidence for stabilizing selection in a eukaryotic enhancer element. Nature 403: 564-567.
    • (2000) Nature , vol.403 , pp. 564-567
    • Ludwig, M.Z.1    Bergman, C.2    Patel, N.H.3    Kreitman, M.4
  • 29
    • 1842584883 scopus 로고    scopus 로고
    • RNA regulation: A new genetics?
    • Mattick, J.S. 2004. RNA regulation: A new genetics? Nat. Rev. Genet. 5: 316-323.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 316-323
    • Mattick, J.S.1
  • 30
    • 29444457713 scopus 로고    scopus 로고
    • Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function
    • Pang, K.C., Frith, M.C., and Mattick, J.S. 2006. Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function. Trends Genet. 22: 1-5.
    • (2006) Trends Genet. , vol.22 , pp. 1-5
    • Pang, K.C.1    Frith, M.C.2    Mattick, J.S.3
  • 36
    • 0034893582 scopus 로고    scopus 로고
    • Rapid evolution of cis-regulatory sequences via local point mutations
    • Stone, J.R. and Wray, G.A. 2001. Rapid evolution of cis-regulatory sequences via local point mutations. Mol. Biol. Evol. 18: 1764-1770.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1764-1770
    • Stone, J.R.1    Wray, G.A.2
  • 37
    • 0037380723 scopus 로고    scopus 로고
    • Comparative genomics: Genome-wide analysis in metazoan eukaryotes
    • Ureta-Vidal, A., Ettwiller, L., and Birney, E. 2003. Comparative genomics: Genome-wide analysis in metazoan eukaryotes. Nat. Rev. Genet. 4: 251-262.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 251-262
    • Ureta-Vidal, A.1    Ettwiller, L.2    Birney, E.3
  • 39
    • 1842584947 scopus 로고    scopus 로고
    • Applied bioinformatics for the identification of regulatory elements
    • Wasserman, W.W. and Sandelin, A. 2004. Applied bioinformatics for the identification of regulatory elements. Nat. Rev. Genet. 5: 276-287.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 276-287
    • Wasserman, W.W.1    Sandelin, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.