-
1
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
DOI 10.1038/35001009
-
Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403: 623-627. (Pubitemid 30103994)
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Glot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emlli, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
2
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
DOI 10.1073/pnas.061034498
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci U S A 98: 4569-4574. (Pubitemid 32295017)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.8
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
3
-
-
0345600247
-
A Protein Interaction Map of Drosophila melanogaster
-
DOI 10.1126/science.1090289
-
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, et al. (2003) A protein interaction map of Drosophila melanogaster. Science 302: 1727-1736. (Pubitemid 37505730)
-
(2003)
Science
, vol.302
, Issue.5651
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
Vijayadamodar, G.11
Pochart, P.12
Machineni, H.13
Welsh, M.14
Kong, Y.15
Zerhusen, B.16
Malcolm, R.17
Varrone, Z.18
Collis, A.19
Minto, M.20
Burgess, S.21
McDaniel, L.22
Stimpson, E.23
Spriggs, F.24
Williams, J.25
Neurath, K.26
Ioime, N.27
Agee, M.28
Voss, E.29
Furtak, K.30
Renzulli, R.31
Aanensen, N.32
Carrolla, S.33
Bickelhaupt, E.34
Lazovatsky, Y.35
Dasilva, A.36
Zhong, J.37
Stanyon, C.A.38
Finley Jr., R.L.39
White, K.P.40
Braverman, M.41
Jarvie, T.42
Gold, S.43
Leach, M.44
Knight, J.45
Shimkets, R.A.46
McKenna, M.P.47
Chant, J.48
Rothberg, J.M.49
more..
-
4
-
-
9144264169
-
A Map of the Interactome Network of the Metazoan C. elegans
-
DOI 10.1126/science.1091403
-
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, et al. (2004) A map of the interactome network of the metazoan C. elegans. Science 303: 540-543. (Pubitemid 38120855)
-
(2004)
Science
, vol.303
, Issue.5657
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.-O.7
Han, J.-D.J.8
Chesneau, A.9
Hao, T.10
Goldberg, D.S.11
Li, N.12
Martinez, M.13
Rual, J.-F.14
Lamesch, P.15
Xu, L.16
Tewari, M.17
Wong, S.L.18
Zhang, L.V.19
Berriz, G.F.20
Jacotot, L.21
Vaglio, P.22
Reboul, J.23
Hirozane-Kishikawa, T.24
Li, Q.25
Gabel, H.W.26
Elewa, A.27
Baumgartner, B.28
Rose, D.J.29
Yu, H.30
Bosak, S.31
Sequerra, R.32
Fraser, A.33
Mango, S.E.34
Saxton, W.M.35
Strome, S.36
Van Den Heuvel, S.V.37
Piano, F.38
Vandenhaute, J.39
Sardet, C.40
Gerstein, M.41
Doucette-Stamm, L.42
Gunsalus, K.C.43
Harper, J.W.44
Cusick, M.E.45
Roth, F.P.46
Hill, D.E.47
Vidal, M.48
more..
-
5
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440: 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
-
6
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440: 637-643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
-
7
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
DOI 10.1038/nature04209, PII N04209
-
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173-1178. (Pubitemid 41509356)
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1173-1178
-
-
Rual, J.-F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
Klitgord, N.11
Simon, C.12
Boxem, M.13
Milstein, S.14
Rosenberg, J.15
Goldberg, D.S.16
Zhang, L.V.17
Wong, S.L.18
Franklin, G.19
Li, S.20
Albala, J.S.21
Lim, J.22
Fraughton, C.23
Llamosas, E.24
Cevik, S.25
Bex, C.26
Lamesch, P.27
Sikorski, R.S.28
Vandenhaute, J.29
Zoghbi, H.Y.30
Smolyar, A.31
Bosak, S.32
Sequerra, R.33
Doucette-Stamm, L.34
Cusick, M.E.35
Hill, D.E.36
Roth, F.P.37
Vidal, M.38
more..
-
8
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
DOI 10.1016/j.cell.2005.08.029, PII S0092867405008664
-
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, et al. (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell 122: 957-968. (Pubitemid 41345212)
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksoz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.E.23
more..
-
9
-
-
33847744247
-
How complete are current yeast and human protein-interaction networks?
-
Hart GT, Ramani AK, Marcotte EM (2006) How complete are current yeast and human protein-interaction networks? Genome Biol 7: 120.
-
(2006)
Genome Biol
, vol.7
, pp. 120
-
-
Hart, G.T.1
Ramani, A.K.2
Marcotte, E.M.3
-
10
-
-
49749117432
-
Contextual specificity in peptide-mediated protein interactions
-
Stein A, Aloy P (2008) Contextual specificity in peptide-mediated protein interactions. PLoS ONE 3: e2524.
-
(2008)
PLoS ONE
, vol.3
-
-
Stein, A.1
Aloy, P.2
-
11
-
-
44649187518
-
Incorporating high-throughput proteomics experiments into structural biology pipelines: Identification of the low-hanging fruits
-
Pache RA, Aloy P (2008) Incorporating high-throughput proteomics experiments into structural biology pipelines: identification of the low-hanging fruits. Proteomics 8: 1959-1964.
-
(2008)
Proteomics
, vol.8
, pp. 1959-1964
-
-
Pache, R.A.1
Aloy, P.2
-
12
-
-
0042386609
-
The relationship between sequence and interaction divergence in proteins
-
DOI 10.1016/j.jmb.2003.07.006
-
Aloy P, Ceulemans H, Stark A, Russell RB (2003) The relationship between sequence and interaction divergence in proteins. J Mol Biol 332: 989-998. (Pubitemid 37108793)
-
(2003)
Journal of Molecular Biology
, vol.332
, Issue.5
, pp. 989-998
-
-
Aloy, P.1
Ceulemans, H.2
Stark, A.3
Russell, R.B.4
-
13
-
-
12144290243
-
Structure-Based Assembly of Protein Complexes in Yeast
-
DOI 10.1126/science.1092645
-
Aloy P, Bottcher B, Ceulemans H, Leutwein C, Mellwig C, et al. (2004) Structure-based assembly of protein complexes in yeast. Science 303: 2026-2029. (Pubitemid 38393279)
-
(2004)
Science
, vol.303
, Issue.5666
, pp. 2026-2029
-
-
Aloy, P.1
Bottcher, B.2
Ceulemans, H.3
Leutwein, C.4
Mellwig, C.5
Fischer, S.6
Gavin, A.-C.7
Bork, P.8
Superti-Furga, G.9
Serrano, L.10
Russell, R.B.11
-
14
-
-
33645961330
-
Flexible protein-protein docking
-
Bonvin AM (2006) Flexible protein-protein docking. Curr Opin Struct Biol 16: 194-200.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 194-200
-
-
Bonvin, A.M.1
-
15
-
-
33646472024
-
High-resolution protein-protein docking
-
Gray JJ (2006) High-resolution protein-protein docking. Curr Opin Struct Biol 16: 183-193.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 183-193
-
-
Gray, J.J.1
-
16
-
-
41949111630
-
Recent progress and future directions in protein-protein docking
-
Ritchie DW (2008) Recent progress and future directions in protein-protein docking. Curr Protein Pept Sci 9: 1-15.
-
(2008)
Curr Protein Pept Sci
, vol.9
, pp. 1-15
-
-
Ritchie, D.W.1
-
18
-
-
0038021436
-
Assessment of blind predictions of protein-protein interactions: Current status of docking methods
-
DOI 10.1002/prot.10393
-
Mendez R, Leplae R, De Maria L, Wodak SJ (2003) Assessment of blind predictions of protein-protein interactions: current status of docking methods. Proteins 52: 51-67. (Pubitemid 36648851)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.52
, Issue.1
, pp. 51-67
-
-
Mendez, R.1
Leplae, R.2
De Maria, L.3
Wodak, S.J.4
-
19
-
-
21644469377
-
Assessment of CAPRI predictions in Rounds 3-5 shows progress in docking procedures
-
DOI 10.1002/prot.20551
-
Mendez R, Leplae R, Lensink MF, Wodak SJ (2005) Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins 60: 150-169. (Pubitemid 40934881)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.60
, Issue.2
, pp. 150-169
-
-
Mendez, R.1
Leplae, R.2
Lensink, M.F.3
Wodak, S.J.4
-
20
-
-
0031565730
-
Modelling protein docking using shape complementarity, electrostatics and biochemical information
-
Gabb HA, Jackson RM, Sternberg MJ (1997) Modelling protein docking using shape complementarity, electrostatics and biochemical information. J Mol Biol 272: 106-120.
-
(1997)
J Mol Biol
, vol.272
, pp. 106-120
-
-
Gabb, H.A.1
Jackson, R.M.2
Sternberg, M.J.3
-
21
-
-
0038526303
-
ZDOCK: An initial-stage protein-docking algorithm
-
Chen R, Li L, Weng Z (2003) ZDOCK: an initial-stage protein-docking algorithm. Proteins 52: 80-87.
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
22
-
-
0037093643
-
Docking unbound proteins using shape complementarity, desolvation, and electrostatics
-
DOI 10.1002/prot.10092
-
Chen R, Weng Z (2002) Docking unbound proteins using shape complementarity, desolvation, and electrostatics. Proteins 47: 281-294. (Pubitemid 34438678)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.47
, Issue.3
, pp. 281-294
-
-
Chen, R.1
Weng, Z.2
-
23
-
-
35449008122
-
Integrating statistical pair potentials into protein complex prediction
-
DOI 10.1002/prot.21502
-
Mintseris J, Pierce B, Wiehe K, Anderson R, Chen R, et al. (2007) Integrating statistical pair potentials into protein complex prediction. Proteins 69: 511-520. (Pubitemid 47628683)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.69
, Issue.3
, pp. 511-520
-
-
Mintseris, J.1
Pierce, B.2
Wiehe, K.3
Anderson, R.4
Chen, R.5
Weng, Z.6
-
24
-
-
0034193510
-
Protein docking using spherical polar Fourier correlations
-
Ritchie DW, Kemp GJ (2000) Protein docking using spherical polar Fourier correlations. Proteins 39: 178-194.
-
(2000)
Proteins
, vol.39
, pp. 178-194
-
-
Ritchie, D.W.1
Kemp, G.J.2
-
25
-
-
0026572775
-
Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques
-
Katchalski-Katzir E, Shariv I, Eisenstein M, Friesem AA, Aflalo C, et al. (1992) Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques. Proc Natl Acad Sci U S A 89: 2195-2199.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 2195-2199
-
-
Katchalski-Katzir, E.1
Shariv, I.2
Eisenstein, M.3
Friesem, A.A.4
Aflalo, C.5
-
26
-
-
0036149480
-
Soft protein-protein docking in internal coordinates
-
DOI 10.1110/ps.19202
-
Fernandez-Recio J, Totrov M, Abagyan R (2002) Soft protein-protein docking in internal coordinates. Protein Sci 11: 280-291. (Pubitemid 34075791)
-
(2002)
Protein Science
, vol.11
, Issue.2
, pp. 280-291
-
-
Fernandez-Recio, J.1
Totrov, M.2
Abagyan, R.3
-
29
-
-
34250882254
-
pyDock: Electrostatics and desolvation for effective scoring of rigid-body protein-protein docking
-
Cheng TM, Blundell TL, Fernandez-Recio J (2007) pyDock: electrostatics and desolvation for effective scoring of rigid-body protein-protein docking. Proteins 68: 503-515.
-
(2007)
Proteins
, vol.68
, pp. 503-515
-
-
Cheng, T.M.1
Blundell, T.L.2
Fernandez-Recio, J.3
-
30
-
-
36749053938
-
Prediction and scoring of docking poses with pyDock
-
DOI 10.1002/prot.21796
-
Grosdidier S, Pons C, Solernou A, Fernandez-Recio J (2007) Prediction and scoring of docking poses with pyDock. Proteins 69: 852-858. (Pubitemid 350210148)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.69
, Issue.4
, pp. 852-858
-
-
Grosdidier, S.1
Pons, C.2
Solernou, A.3
Fernandez-Recio, J.4
-
31
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
DOI 10.1021/ja026939x
-
Dominguez C, Boelens R, Bonvin AM (2003) HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 125: 1731-1737. (Pubitemid 36232568)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.7
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.J.J.3
-
32
-
-
21644437700
-
Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets
-
Camacho CJ (2005) Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets. Proteins 60: 245-251.
-
(2005)
Proteins
, vol.60
, pp. 245-251
-
-
Camacho, C.J.1
-
33
-
-
0038359596
-
Successful discrimination of protein interactions
-
Camacho CJ, Gatchell DW (2003) Successful discrimination of protein interactions. Proteins 52: 92-97.
-
(2003)
Proteins
, vol.52
, pp. 92-97
-
-
Camacho, C.J.1
Gatchell, D.W.2
-
34
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
DOI 10.1016/S0022-2836(03)00670-3
-
Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, et al. (2003) Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Biol 331: 281-299. (Pubitemid 36870793)
-
(2003)
Journal of Molecular Biology
, vol.331
, Issue.1
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
-
35
-
-
21644435306
-
ATTRACT: Protein-protein docking in CAPRI using a reduced protein model
-
DOI 10.1002/prot.20566
-
Zacharias M (2005) ATTRACT: protein-protein docking in CAPRI using a reduced protein model. Proteins 60: 252-256. (Pubitemid 40934895)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.60
, Issue.2
, pp. 252-256
-
-
Zacharias, M.1
-
36
-
-
1242270553
-
Protein-protein docking: Is the glass half-full or half-empty?
-
Vajda S, Camacho CJ (2004) Protein-protein docking: is the glass half-full or half-empty? Trends Biotechnol 22: 110-116.
-
(2004)
Trends Biotechnol
, vol.22
, pp. 110-116
-
-
Vajda, S.1
Camacho, C.J.2
-
37
-
-
21644458102
-
Classification of protein complexes based on docking difficulty
-
DOI 10.1002/prot.20554
-
Vajda S (2005) Classification of protein complexes based on docking difficulty. Proteins 60: 176-180. (Pubitemid 40934883)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.60
, Issue.2
, pp. 176-180
-
-
Vajda, S.1
-
38
-
-
57349132441
-
Protein-protein docking benchmark version 3.0
-
DOI 10.1002/prot.22106
-
Hwang H, Pierce B, Mintseris J, Janin J, Weng Z (2008) Protein-protein docking benchmark version 3.0. Proteins 73: 705-709. (Pubitemid 352788651)
-
(2008)
Proteins: Structure, Function and Genetics
, vol.73
, Issue.3
, pp. 705-709
-
-
Hwang, H.1
Pierce, B.2
Mintseris, J.3
Janin, J.4
Weng, Z.5
-
39
-
-
0038185277
-
A novel shape complementarity scoring function for protein-protein docking
-
DOI 10.1002/prot.10334
-
Chen R, Weng Z (2003) A novel shape complementarity scoring function for protein-protein docking. Proteins 51: 397-408. (Pubitemid 36528825)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.51
, Issue.3
, pp. 397-408
-
-
Chen, R.1
Weng, Z.2
-
40
-
-
0031552370
-
Determination of atomic desolvation energies from the structures of crystallized proteins
-
DOI 10.1006/jmbi.1996.0859
-
Zhang C, Vasmatzis G, Cornette JL, DeLisi C (1997) Determination of atomic desolvation energies from the structures of crystallized proteins. J Mol Biol 267: 707-726. (Pubitemid 27170692)
-
(1997)
Journal of Molecular Biology
, vol.267
, Issue.3
, pp. 707-726
-
-
Zhang, C.1
Vasmatzis, G.2
Cornette, J.L.3
Delisi, C.4
-
41
-
-
18244392226
-
Optimizing protein representations with information theory
-
Mintseris J, Weng Z (2004) Optimizing protein representations with information theory. Genome Inform 15: 160-169.
-
(2004)
Genome Inform
, vol.15
, pp. 160-169
-
-
Mintseris, J.1
Weng, Z.2
-
42
-
-
0042511005
-
A graph-theory algorithm for rapid protein side-chain prediction
-
Canutescu AA, Shelenkov AA, Dunbrack RL Jr (2003) A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci 12: 2001-2014.
-
(2003)
Protein Sci
, vol.12
, pp. 2001-2014
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack Jr., R.L.3
-
43
-
-
0031858914
-
SGD: Saccharomyces Genome Database
-
Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, et al. (1998) SGD: Saccharomyces Genome Database. Nucleic Acids Res 26: 73-79.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 73-79
-
-
Cherry, J.M.1
Adler, C.2
Ball, C.3
Chervitz, S.A.4
Dwight, S.S.5
-
44
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
45
-
-
0025183708
-
Basic local alignment search tool
-
DOI 10.1006/jmbi.1990.9999
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410. (Pubitemid 20364473)
-
(1990)
Journal of Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
46
-
-
9144244232
-
MODBASE, a database of annotated comparative protein structure models, and associated resources
-
Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, et al. (2006) MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res 34: D291-295. (Pubitemid 38081642)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS
-
-
Pieper, U.1
Eswar, N.2
Braberg, H.3
Madhusudhan, M.S.4
Davis, F.P.5
Stuart, A.C.6
Mirkovic, N.7
Rossi, A.8
Marti-Renom, M.A.9
Fiser, A.10
Webb, B.11
Greenblatt, D.12
Huang, C.C.13
Ferrin, T.E.14
Sali, A.15
-
47
-
-
38549146894
-
The Pfam protein families database
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, et al. (2008) The Pfam protein families database. Nucleic Acids Res 36: D281-288.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
-
48
-
-
9144248312
-
IntAct: An open source molecular interaction database
-
Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, et al. (2004) IntAct: an open source molecular interaction database. Nucleic Acids Res 32: D452-455. (Pubitemid 38081697)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Lewington, C.3
Mudali, S.4
Kerrien, S.5
Orchard, S.6
Vingron, M.7
Roechert, B.8
Roepstorff, P.9
Valencia, A.10
Margalit, H.11
Armstrong, J.12
Bairoch, A.13
Cesareni, G.14
Sherman, D.15
Apweiler, R.16
-
49
-
-
33846073818
-
MINT: The Molecular INTeraction database
-
Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, et al. (2007) MINT: the Molecular INTeraction database. Nucleic Acids Res 35: D572-574.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Chatr-aryamontri, A.1
Ceol, A.2
Palazzi, L.M.3
Nardelli, G.4
Schneider, M.V.5
-
50
-
-
51849139041
-
Alignment of protein structures in the presence of domain motions
-
Mosca R, Brannetti B, Schneider TR (2008) Alignment of protein structures in the presence of domain motions. BMC Bioinformatics 9: 352.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 352
-
-
Mosca, R.1
Brannetti, B.2
Schneider, T.R.3
-
51
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia C, Lesk AM (1986) The relation between the divergence of sequence and structure in proteins. Embo J 5: 823-826.
-
(1986)
Embo J
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
52
-
-
33644878150
-
MPact: The MIPS protein interaction resource on yeast
-
Guldener U, Munsterkotter M, Oesterheld M, Pagel P, Ruepp A, et al. (2006) MPact: the MIPS protein interaction resource on yeast. Nucleic Acids Res 34: D436-441.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Guldener, U.1
Munsterkotter, M.2
Oesterheld, M.3
Pagel, P.4
Ruepp, A.5
-
53
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
DOI 10.1038/415141a
-
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147. (Pubitemid 34059510)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 141-147
-
-
Gavin, A.-C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.-M.9
Cruciat, C.-M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.-A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
54
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
DOI 10.1038/415180a
-
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415: 180-183. (Pubitemid 34059520)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.-L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.V.44
Figeys, D.45
Tyers, M.46
more..
-
55
-
-
10744227471
-
High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes
-
DOI 10.1016/S1097-2765(04)00003-6
-
Krogan NJ, Peng WT, Cagney G, Robinson MD, Haw R, et al. (2004) High-definition macromolecular composition of yeast RNA-processing complexes. Mol Cell 13: 225-239. (Pubitemid 38183269)
-
(2004)
Molecular Cell
, vol.13
, Issue.2
, pp. 225-239
-
-
Krogan, N.J.1
Peng, W.-T.2
Cagney, G.3
Robinson, M.D.4
Haw, R.5
Zhong, G.6
Guo, X.7
Zhang, X.8
Canadien, V.9
Richards, D.P.10
Beattie, B.K.11
Lalev, A.12
Zhang, W.13
Davierwala, A.P.14
Mnaimneh, S.15
Starostine, A.16
Tikuisis, A.P.17
Grigull, J.18
Datta, N.19
Bray, J.E.20
Hughes, T.R.21
Emili, A.22
Greenblatt, J.F.23
more..
-
56
-
-
33847317318
-
Inherent limitations in protein-protein docking procedures
-
DOI 10.1093/bioinformatics/btl524
-
Kowalsman N, Eisenstein M (2007) Inherent limitations in protein-protein docking procedures. Bioinformatics 23: 421-426. (Pubitemid 46323122)
-
(2007)
Bioinformatics
, vol.23
, Issue.4
, pp. 421-426
-
-
Kowalsman, N.1
Eisenstein, M.2
-
57
-
-
49649114605
-
Protein structure modeling with MODELLER
-
Eswar N, Eramian D, Webb B, Shen MY, Sali A (2008) Protein structure modeling with MODELLER. Methods Mol Biol 426: 145-159.
-
(2008)
Methods Mol Biol
, vol.426
, pp. 145-159
-
-
Eswar, N.1
Eramian, D.2
Webb, B.3
Shen, M.Y.4
Sali, A.5
-
58
-
-
5044235050
-
Ten thousand interactions for the molecular biologist
-
DOI 10.1038/nbt1018
-
Aloy P, Russell RB (2004) Ten thousand interactions for the molecular biologist. Nat Biotechnol 22: 1317-1321. (Pubitemid 39336787)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.10
, pp. 1317-1321
-
-
Aloy, P.1
Russell, R.B.2
-
59
-
-
0036606483
-
Principles of docking: An overview of search algorithms and a guide to scoring functions
-
DOI 10.1002/prot.10115
-
Halperin I, Ma B, Wolfson H, Nussinov R (2002) Principles of docking: An overview of search algorithms and a guide to scoring functions. Proteins 47: 409-443. (Pubitemid 34614722)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.47
, Issue.4
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
60
-
-
9144257235
-
Assigning Function to Yeast Proteins by Integration of Technologies
-
DOI 10.1016/S1097-2765(03)00476-3
-
Hazbun TR, Malmstrom L, Anderson S, Graczyk BJ, Fox B, et al. (2003) Assigning function to yeast proteins by integration of technologies. Mol Cell 12: 1353-1365. (Pubitemid 38037006)
-
(2003)
Molecular Cell
, vol.12
, Issue.6
, pp. 1353-1365
-
-
Hazbun, T.R.1
Malmstrom, L.2
Anderson, S.3
Graczyk, B.J.4
Fox, B.5
Riffle, M.6
Sundin, B.A.7
Aranda, J.D.8
McDonald, W.H.9
Chiu, C.-H.10
Snydsman, B.E.11
Bradley, P.12
Muller, E.G.D.13
Fields, S.14
Baker, D.15
Yates III, J.R.16
Davis, T.N.17
-
61
-
-
54249117223
-
Targeting and tinkering with interaction networks
-
Russell RB, Aloy P (2008) Targeting and tinkering with interaction networks. Nat Chem Biol 4: 666-673.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 666-673
-
-
Russell, R.B.1
Aloy, P.2
-
62
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322: 104-110.
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
-
63
-
-
33947712535
-
WI-PHI: A weighted yeast interactome enriched for direct physical interactions
-
DOI 10.1002/pmic.200600448
-
Kiemer L, Costa S, Ueffing M, Cesareni G (2007) WI-PHI: a weighted yeast interactome enriched for direct physical interactions. Proteomics 7: 932-943. (Pubitemid 46506740)
-
(2007)
Proteomics
, vol.7
, Issue.6
, pp. 932-943
-
-
Kiemer, L.1
Costa, S.2
Ueffing, M.3
Cesareni, G.4
|