-
1
-
-
0038359614
-
CAPRI: A Critical Assessment of PRedicted Interactions
-
Janin J, Henrick K, Moult J, Ten Eyck L, Sternberg MJ, Vajda S, Vakser I, Wodak SJ. CAPRI: a Critical Assessment of PRedicted Interactions. Proteins 2003;52:2-9.
-
(2003)
Proteins
, vol.52
, pp. 2-9
-
-
Janin, J.1
Henrick, K.2
Moult, J.3
Ten Eyck, L.4
Sternberg, M.J.5
Vajda, S.6
Vakser, I.7
Wodak, S.J.8
-
2
-
-
1242270553
-
Protein-protein docking: Is the glass half full or half empty?
-
Vajda S, Camacho CJ. Protein-protein docking: is the glass half full or half empty? Trends Biotechnol 2004;22:110-116.
-
(2004)
Trends Biotechnol
, vol.22
, pp. 110-116
-
-
Vajda, S.1
Camacho, C.J.2
-
3
-
-
0345832301
-
ClusPro: An automated docking and discrimination method for the prediction of protein complexes
-
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics 2004;20:45-50.
-
(2004)
Bioinformatics
, vol.20
, pp. 45-50
-
-
Comeau, S.R.1
Gatchell, D.W.2
Vajda, S.3
Camacho, C.J.4
-
4
-
-
0038526303
-
ZDOCK: An initial-stage protein-docking algorithm
-
Chen R, Li L, Weng Z. ZDOCK: An initial-stage protein-docking algorithm. Proteins 2003;52:80-87.
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
5
-
-
0242299200
-
RDOCK: Refinement of rigid-body protein docking predictions
-
Li L, Cheng R, Weng Z. RDOCK: refinement of rigid-body protein docking predictions. Proteins 2003;53:693-707.
-
(2003)
Proteins
, vol.53
, pp. 693-707
-
-
Li, L.1
Cheng, R.2
Weng, Z.3
-
6
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Biol 2003;331:281-299.
-
(2003)
J Mol Biol
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
-
8
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
LoConte L, Chothia C, Janin J. The atomic structure of protein-protein recognition sites. J Mol Biol 1999;285:2177-2198.
-
(1999)
J Mol Biol
, vol.285
, pp. 2177-2198
-
-
LoConte, L.1
Chothia, C.2
Janin, J.3
-
9
-
-
0037093645
-
Dissecting protein-protein recognition sites
-
Chakrabarti P, Janin J. Dissecting protein-protein recognition sites. Proteins 2002;47:334-343.
-
(2002)
Proteins
, vol.47
, pp. 334-343
-
-
Chakrabarti, P.1
Janin, J.2
-
10
-
-
0031552370
-
Determination of atomic desolvation energies from the structures of crystallized proteins
-
Zhang C, Vasmatzis G, Cornette JL, DeLisi, C. Determination of atomic desolvation energies from the structures of crystallized proteins. J Mol Biol 1997;267:707-726.
-
(1997)
J Mol Biol
, vol.267
, pp. 707-726
-
-
Zhang, C.1
Vasmatzis, G.2
Cornette, J.L.3
DeLisi, C.4
-
11
-
-
33845377127
-
Estimation of effective interresidue contact energies from protein crystal structures: Quasi-chemical approximation
-
Miyazawa S, Jernigan RL. Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation. Macromolecules 1985;18:534-552.
-
(1985)
Macromolecules
, vol.18
, pp. 534-552
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
12
-
-
0038021436
-
Assessment of blind predictions of protein-protein interactions: Current status of docking methods
-
Méndez R, Leplae R, De Maria L, Wodak SJ. Assessment of blind predictions of protein-protein interactions: current status of docking methods. Proteins 2003;52:51-67.
-
(2003)
Proteins
, vol.52
, pp. 51-67
-
-
Méndez, R.1
Leplae, R.2
De Maria, L.3
Wodak, S.J.4
-
13
-
-
0029967684
-
Crystal structure of three consecutive laminin-type epidermal growth factor-like (LE) modules of laminin gamma1 chain harboring the nidogen binding site
-
Stetefeld J, Mayer U, Timpl R, Huber R. Crystal structure of three consecutive laminin-type epidermal growth factor-like (LE) modules of laminin gamma1 chain harboring the nidogen binding site. J Mol Biol 1996;257:644-657.
-
(1996)
J Mol Biol
, vol.257
, pp. 644-657
-
-
Stetefeld, J.1
Mayer, U.2
Timpl, R.3
Huber, R.4
-
14
-
-
0038237369
-
Taking geometry to its edge: Fast unbound rigid (and hinge-bent) docking
-
Schneidman-Duhovny D, Inbar Y, Polak V, Shatsky M, Halperin I, Benyamini H, Barzilai A, Dror O, Haspel N, Nussinov R, Wolfson HJ. Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking. Proteins 2003;52:107-112.
-
(2003)
Proteins
, vol.52
, pp. 107-112
-
-
Schneidman-Duhovny, D.1
Inbar, Y.2
Polak, V.3
Shatsky, M.4
Halperin, I.5
Benyamini, H.6
Barzilai, A.7
Dror, O.8
Haspel, N.9
Nussinov, R.10
Wolfson, H.J.11
-
15
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez C, Boelens R, Bonvin AM. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 2003;125:1731-1737.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
16
-
-
0000606386
-
Study of the subunit interactions in myosin phosphatase by surface plasmon resonance
-
Toth A, Kiss E, Herberg FW, Gergely P, Hartshorne DJ, Erdodi F. Study of the subunit interactions in myosin phosphatase by surface plasmon resonance. Eur J Biochem 2000;267:1687-1697.
-
(2000)
Eur J Biochem
, vol.267
, pp. 1687-1697
-
-
Toth, A.1
Kiss, E.2
Herberg, F.W.3
Gergely, P.4
Hartshorne, D.J.5
Erdodi, F.6
-
17
-
-
0030977268
-
Structural basis for the recognition of regulatory subunits by the catalytic subunit of protein phosphatase 1
-
Egloff MP, Johnson DF, Moorhead G, Cohen PT, Cohen P, Barford D. Structural basis for the recognition of regulatory subunits by the catalytic subunit of protein phosphatase 1. EMBO J 1997;16: 1876-1887.
-
(1997)
EMBO J
, vol.16
, pp. 1876-1887
-
-
Egloff, M.P.1
Johnson, D.F.2
Moorhead, G.3
Cohen, P.T.4
Cohen, P.5
Barford, D.6
-
18
-
-
21644480883
-
Protein-Protein Docking Benchmark 2.0: An update
-
Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z. Protein-Protein Docking Benchmark 2.0: an update. Proteins 2005;60:214-216.
-
(2005)
Proteins
, vol.60
, pp. 214-216
-
-
Mintseris, J.1
Wiehe, K.2
Pierce, B.3
Anderson, R.4
Chen, R.5
Janin, J.6
Weng, Z.7
-
19
-
-
21644472422
-
Performance of the first protein docking server ClusPro in CAPRI Rounds 3-5
-
Comeau SR, Vajda S, Camacho CJ. Performance of the first protein docking server ClusPro in CAPRI Rounds 3-5. Proteins 2005;60:239-244.
-
(2005)
Proteins
, vol.60
, pp. 239-244
-
-
Comeau, S.R.1
Vajda, S.2
Camacho, C.J.3
|