메뉴 건너뛰기




Volumn 32, Issue DATABASE ISS., 2004, Pages

MODBASE, a database of annotated comparative protein structure models, and associated resources

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; LIGAND;

EID: 9144244232     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (205)

References (35)
  • 1
    • 0033970022 scopus 로고    scopus 로고
    • Expectations from structural genomics
    • Brenner,S.E. and Levitt,M. (2000) Expectations from structural genomics. Protein Sci., 9, 197-200.
    • (2000) Protein Sci. , vol.9 , pp. 197-200
    • Brenner, S.E.1    Levitt, M.2
  • 5
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • Baker,D. and Sali,A. (2001) Protein structure prediction and structural genomics. Science, 294, 93-96.
    • (2001) Science , vol.294 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 7
    • 0036089481 scopus 로고    scopus 로고
    • MODBASE, a database of annotated comparative protein structure models
    • Pieper,U., Eswar,N., Stuart,A.C., Ilyin,V.A. and Sali,A. (2002) MODBASE, a database of annotated comparative protein structure models. Nucleic Acids Res., 30, 255-259.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 255-259
    • Pieper, U.1    Eswar, N.2    Stuart, A.C.3    Ilyin, V.A.4    Sali, A.5
  • 10
    • 0035698724 scopus 로고    scopus 로고
    • LiveBench-2: Large-scale automated evaluation of protein structure prediction servers
    • Bujnicki,J.M., Elofsson,A., Fischer,D. and Rychlewski,L. (2001) LiveBench-2: large-scale automated evaluation of protein structure prediction servers. Proteins (Suppl. 5), 184-191.
    • (2001) Proteins , Issue.SUPPL. 5 , pp. 184-191
    • Bujnicki, J.M.1    Elofsson, A.2    Fischer, D.3    Rychlewski, L.4
  • 11
    • 0034853119 scopus 로고    scopus 로고
    • DBAli: A database of protein structure alignments
    • Marti-Renom,M.A., Ilyin,V.A. and Sali,A. (2001) DBAli: a database of protein structure alignments. Bioinformatics, 17, 746-747.
    • (2001) Bioinformatics , vol.17 , pp. 746-747
    • Marti-Renom, M.A.1    Ilyin, V.A.2    Sali, A.3
  • 12
    • 0346882663 scopus 로고    scopus 로고
    • ModLoop: Automated modeling of loops in protein structures
    • in press
    • Fiser,A. and Sali,A. (2003) ModLoop: Automated modeling of loops in protein structures. Bioinformatics, in press.
    • (2003) Bioinformatics
    • Fiser, A.1    Sali, A.2
  • 13
    • 0000577528 scopus 로고    scopus 로고
    • CHIMERA: An extensible molecular modeling application constructed using standard components
    • Huang,C.C., Couch,G.S., Pettersen,E.F. and Ferring,T.E. (1996) CHIMERA: An extensible molecular modeling application constructed using standard components. Pacific Symp. Biocomput., 1, 724.
    • (1996) Pacific Symp. Biocomput. , vol.1 , pp. 724
    • Huang, C.C.1    Couch, G.S.2    Pettersen, E.F.3    Ferring, T.E.4
  • 14
    • 0348121087 scopus 로고
    • Molecular Simulations Inc
    • 2. Molecular Simulations Inc., Vol. 2, p. 5.
    • (1995) 2 , vol.2 , pp. 5
    • Sali, A.1
  • 18
    • 0141978673 scopus 로고    scopus 로고
    • Comparative protein structure modeling by iterative alignment, model building and model assessment
    • John,B. and Sali,A. (2003) Comparative protein structure modeling by iterative alignment, model building and model assessment. Nucleic Acids Res., 31, 3982-3992.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3982-3992
    • John, B.1    Sali, A.2
  • 19
    • 0141448942 scopus 로고    scopus 로고
    • ModBase: A database of comparative protein structure models
    • Sanchez,R. and Sali,A. (1999) ModBase: a database of comparative protein structure models. Bioinformatics, 15, 1060-1061.
    • (1999) Bioinformatics , vol.15 , pp. 1060-1061
    • Sanchez, R.1    Sali, A.2
  • 21
    • 0025317502 scopus 로고
    • Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming
    • Sali,A. and Blundell,T.L. (1990) Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. J. Mol. Biol., 212, 403-428.
    • (1990) J. Mol. Biol. , vol.212 , pp. 403-428
    • Sali, A.1    Blundell, T.L.2
  • 23
    • 0037423702 scopus 로고    scopus 로고
    • COMPASS: A tool for comparison of multiple protein alignments with assessment of statistical significance
    • Sadreyev,R. and Grishin,N. (2003) COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance. J. Mol. Biol., 326, 317-336.
    • (2003) J. Mol. Biol. , vol.326 , pp. 317-336
    • Sadreyev, R.1    Grishin, N.2
  • 24
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali,A. and Blundell,T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
    • (1993) J. Mol. Biol. , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 25
    • 0036145846 scopus 로고    scopus 로고
    • Statistical potentials for fold assessment
    • Melo,F., Sanchez,R. and Sali,A. (2002) Statistical potentials for fold assessment. Protein Sci., 11, 430-448.
    • (2002) Protein Sci. , vol.11 , pp. 430-448
    • Melo, F.1    Sanchez, R.2    Sali, A.3
  • 26
    • 0038438514 scopus 로고    scopus 로고
    • IMPALA: Matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
    • Schaffer,A.A., Wolf,Y.I., Ponting,C.P., Koonin,E.V., Aravind,L. and Altschul,S.F. (1999) IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinformatics, 15, 1000-1011.
    • (1999) Bioinformatics , vol.15 , pp. 1000-1011
    • Schaffer, A.A.1    Wolf, Y.I.2    Ponting, C.P.3    Koonin, E.V.4    Aravind, L.5    Altschul, S.F.6
  • 28
    • 0037250158 scopus 로고    scopus 로고
    • InterPreTS: Protein interaction prediction through tertiary structure
    • Aloy,P. and Russell,R.B. (2003) InterPreTS: protein interaction prediction through tertiary structure. Bioinformatics, 19, 161-162.
    • (2003) Bioinformatics , vol.19 , pp. 161-162
    • Aloy, P.1    Russell, R.B.2
  • 29
    • 0037110589 scopus 로고    scopus 로고
    • MULTIPROSPECTOR: An algorithm for the prediction of protein-protein interactions by multimeric threading
    • Lu,L., Lu,H. and Skolnick,J. (2002) MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. Proteins, 49, 350-364.
    • (2002) Proteins , vol.49 , pp. 350-364
    • Lu, L.1    Lu, H.2    Skolnick, J.3
  • 30
    • 0036169142 scopus 로고    scopus 로고
    • LigBase: A database of families of aligned ligand binding sites in known protein sequences and structures
    • Stuart,A.C., Ilyin,V.A. and Sali,A. (2002) LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures. Bioinformatics, 18, 200-201.
    • (2002) Bioinformatics , vol.18 , pp. 200-201
    • Stuart, A.C.1    Ilyin, V.A.2    Sali, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.