메뉴 건너뛰기




Volumn 7, Issue 11, 2006, Pages

How complete are current yeast and human protein-interaction networks?

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL ERROR; ARTICLE; CONFIDENCE INTERVAL; FALSE POSITIVE RESULT; GENE SEQUENCE; GENOME; HUMAN; MASS SPECTROMETRY; NONHUMAN; PREDICTION; PROTEIN ANALYSIS; PROTEIN INTERACTION; TWO HYBRID SYSTEM; YEAST; METABOLISM; PROTEIN BINDING; PROTEIN DATABASE; SACCHAROMYCES CEREVISIAE;

EID: 33847744247     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2006-7-11-120     Document Type: Article
Times cited : (341)

References (56)
  • 1
    • 33644656793 scopus 로고    scopus 로고
    • Systematic identification of functional orthologs based on protein network comparison
    • Bandyopadhyay S, Sharan R, Ideker T: Systematic identification of functional orthologs based on protein network comparison. Genome Res 2006, 16:428-435.
    • (2006) Genome Res. , vol.16 , pp. 428-435
    • Bandyopadhyay, S.1    Sharan, R.2    Ideker, T.3
  • 3
    • 1542288938 scopus 로고    scopus 로고
    • Global organization of metabolic fluxes in the bacterium Escherichia coli
    • Almaas E, Kovacs B, Vicsek T, Oltvai ZN, Barabasi AL: Global organization of metabolic fluxes in the bacterium Escherichia coli. Nature 2004, 427:839-843.
    • (2004) Nature , vol.427 , pp. 839-843
    • Almaas, E.1    Kovacs, B.2    Vicsek, T.3    Oltvai, Z.N.4    Barabasi, A.L.5
  • 4
    • 33745178476 scopus 로고    scopus 로고
    • Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
    • Herrgard MJ, Lee BS, Portnoy V, Palsson BO: Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. Genome Res 2006, 16:627-635.
    • (2006) Genome Res , vol.16 , pp. 627-635
    • Herrgard, M.J.1    Lee, B.S.2    Portnoy, V.3    Palsson, B.O.4
  • 5
    • 33646200155 scopus 로고    scopus 로고
    • Expression dynamics of a cellular metabolic network
    • doi:10.1038/msb4100023
    • Kharchenko P, Church GM, Vitkup D: Expression dynamics of a cellular metabolic network. Mol Syst Biol 2005, doi:10.1038/msb4100023.
    • (2005) Mol Syst Biol
    • Kharchenko, P.1    Church, G.M.2    Vitkup, D.3
  • 10
    • 26244440771 scopus 로고    scopus 로고
    • Gene essentiality and the topology of protein interaction net-works
    • Coulomb S, Bauer M, Bernard D, Marsolier-Kergoat MC: Gene essentiality and the topology of protein interaction net-works. Proc Biol Sci 2005, 272:1721-1725.
    • (2005) Proc Biol Sci , vol.272 , pp. 1721-1725
    • Coulomb, S.1    Bauer, M.2    Bernard, D.3    Marsolier-Kergoat, M.C.4
  • 11
    • 0030950735 scopus 로고    scopus 로고
    • Human whole-genome shotgun sequencing
    • Weber JL, Myers EW: Human whole-genome shotgun sequencing. Genome Res 1997, 7:401-409.
    • (1997) Genome Res , vol.7 , pp. 401-409
    • Weber, J.L.1    Myers, E.W.2
  • 12
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S, Song O: A novel genetic system to detect protein-protein interactions. Nature 1989, 340:245-246.
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 13
    • 0026680723 scopus 로고
    • Fused protein domains inhibit DNA binding by LexA
    • Golemis EA, Brent R: Fused protein domains inhibit DNA binding by LexA. Mol Cell Biol 1992, 12:3006-3014.
    • (1992) Mol Cell Biol , vol.12 , pp. 3006-3014
    • Golemis, E.A.1    Brent, R.2
  • 19
    • 0032828715 scopus 로고    scopus 로고
    • A generic protein purification method for protein complex characterization and proteome exploration
    • Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Seraphin B: A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 1999, 17:1030-1032.
    • (1999) Nat Biotechnol , vol.17 , pp. 1030-1032
    • Rigaut, G.1    Shevchenko, A.2    Rutz, B.3    Wilm, M.4    Mann, M.5    Seraphin, B.6
  • 24
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes
    • Lee I, Date SV, Adai AT, Marcotte EM: A probabilistic functional network of yeast genes. Science 2004, 306:1555-1558.
    • (2004) Science , vol.306 , pp. 1555-1558
    • Lee, I.1    Date, S.V.2    Adai, A.T.3    Marcotte, E.M.4
  • 26
    • 2642566695 scopus 로고    scopus 로고
    • A probabilistic view of gene function
    • Fraser AG, Marcotte EM: A probabilistic view of gene function. Nat Genet 2004, 36:559-564.
    • (2004) Nat Genet , vol.36 , pp. 559-564
    • Fraser, A.G.1    Marcotte, E.M.2
  • 29
    • 0036789265 scopus 로고    scopus 로고
    • Analyzing yeast protein-protein interaction data obtained from different sources
    • Bader GD, Hogue CW: Analyzing yeast protein-protein interaction data obtained from different sources. Nat Biotechnol 2002, 20:991-997.
    • (2002) Nat Biotechnol , vol.20 , pp. 991-997
    • Bader, G.D.1    Hogue, C.W.2
  • 31
    • 0242317678 scopus 로고    scopus 로고
    • On the number of protein-protein interactions in the yeast proteome
    • Grigoriev A. On the number of protein-protein interactions in the yeast proteome. Nucleic Acids Res 2003, 31:4157-4161.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4157-4161
    • Grigoriev, A.1
  • 32
    • 14044279263 scopus 로고    scopus 로고
    • Estimating and improving protein interaction error rates
    • In August 16-19 2004, Colifornia.Edited by IEEE Computer Society
    • D'haeseleer P, Church GM: Estimating and improving protein interaction error rates. In Proc IEEE Gomput Syst Bioinform Conf. August 16-19 2004, Colifornia.Edited by IEEE Computer Society; 2004:216-223.
    • (2004) Proc IEEE Gomput Syst Bioinform Conf , pp. 216-223
    • D'haeseleer, P.1    Church, G.M.2
  • 34
    • 33750113344 scopus 로고    scopus 로고
    • The elusive yeast interactome
    • Goll J, Uetz P: The elusive yeast interactome. Genome Biol 2006, 7:223.
    • (2006) Genome Biol , vol.7 , pp. 223
    • Goll, J.1    Uetz, P.2
  • 37
    • 0037432528 scopus 로고    scopus 로고
    • How reliable are experimental protein-protein interaction data?
    • Sprinzak E, Sattath S, Margalit H: How reliable are experimental protein-protein interaction data? J Mol Biol 2003, 327:919-923.
    • (2003) J Mol Biol , vol.327 , pp. 919-923
    • Sprinzak, E.1    Sattath, S.2    Margalit, H.3
  • 38
    • 0035279936 scopus 로고    scopus 로고
    • Towards an understanding of complex protein networks
    • Tucker CL, Gera JF, Uetz P: Towards an understanding of complex protein networks. Trends Cell Biol 2001, 11:102-106.
    • (2001) Trends Cell Biol , vol.11 , pp. 102-106
    • Tucker, C.L.1    Gera, J.F.2    Uetz, P.3
  • 39
    • 0035369531 scopus 로고    scopus 로고
    • Protein-protein interaction maps: A lead towards cellular functions
    • Legrain P, Wojcik J, GauthieA JM: Protein-protein interaction maps: a lead towards cellular functions. Trends Genet 2001, 17:346-352.
    • (2001) Trends Genet , vol.17 , pp. 346-352
    • Legrain, P.1    Wojcik, J.2    Gauthier, J.M.3
  • 40
    • 14744270216 scopus 로고    scopus 로고
    • A first-draft human protein-interaction map
    • Lehner B, Fraser AG: A first-draft human protein-interaction map. Genome Biol 2004, 5:R63.
    • (2004) Genome Biol , vol.5
    • Lehner, B.1    Fraser, A.G.2
  • 41
    • 0347473809 scopus 로고    scopus 로고
    • Gaining confidence in high-throughput protein interaction networks
    • Bader JS, Chaudhuri A. Rothberg JM, Chant J: Gaining confidence in high-throughput protein interaction networks. Nat Biotechnol 2004, 22:78-85.
    • (2004) Nat Biotechnol , vol.22 , pp. 78-85
    • Bader, J.S.1    Chaudhuri, A.2    Rothberg, J.M.3    Chant, J.4
  • 42
    • 0036580169 scopus 로고    scopus 로고
    • Protein interactions: Two methods for assessment of the reliability of high throughput observations
    • Deane CM, Salwinski L, Xenarios I, Eisenberg D: Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol Cell Proteomics 2002, 1:349-356.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 349-356
    • Deane, C.M.1    Salwinski, L.2    Xenarios, I.3    Eisenberg, D.4
  • 43
    • 33947427045 scopus 로고    scopus 로고
    • Bioinformatic prediction of yeast gene function
    • In Edited by Stansfield I, Stark M. Amsterdam: Elsevier Press Preprint at
    • Lee I, Narayanaswamy R, Marcotte EM: Bioinformatic prediction of yeast gene function. In Yeast Gene Analysis. Edited by Stansfield I, Stark M. Amsterdam: Elsevier Press; 2007. Preprint at http://polaris.icmb.utexas.edu/publications.html.
    • (2007) Yeast Gene Analysis
    • Lee, I.1    Narayanaswamy, R.2    Marcotte, E.M.3
  • 44
    • 0035212065 scopus 로고    scopus 로고
    • Is there a bias in proteome research?
    • Mrowka R, Patzak A, Herzel H: Is there a bias in proteome research? Genome Res 2001, 11:1971-1973.
    • (2001) Genome Res , vol.11 , pp. 1971-1973
    • Mrowka, R.1    Patzak, A.2    Herzel, H.3
  • 45
    • 24044434446 scopus 로고    scopus 로고
    • Filtering high-throughput protein-protein interaction data using a combination of genomic features
    • Patil A, Nakamura H: Filtering high-throughput protein-protein interaction data using a combination of genomic features. BMC Bioinformatics 2005, 6:100.
    • (2005) BMC Bioinformatics , vol.6 , pp. 100
    • Patil, A.1    Nakamura, H.2
  • 47
    • 0242268461 scopus 로고    scopus 로고
    • Predicting protein functions from redundancies in large-scale protein interaction networks
    • Samanta MP, Liang S: Predicting protein functions from redundancies in large-scale protein interaction networks. Proc Natl Acad Sci USA 2003, 100:12579-12583.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12579-12583
    • Samanta, M.P.1    Liang, S.2
  • 49
    • 25144516911 scopus 로고    scopus 로고
    • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome
    • Ramani AK, Bunescu RC, Mooney RJ, Marcotte EM: Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome. Genome Biol 2005, 6:R40.
    • (2005) Genome Biol , vol.6
    • Ramani, A.K.1    Bunescu, R.C.2    Mooney, R.J.3    Marcotte, E.M.4
  • 50
    • 13444254254 scopus 로고    scopus 로고
    • Anagnostopoulos A, Baldarelli RM, Baya M, Beal JS, Bello SM, et al: The Mouse Genome Database (MGD): From genes to mice-a community resource for mouse biology
    • (Database issue)
    • Eppig JT, Bult CJ, Kadin JA, Richardson JE, Blake JA, Anagnostopoulos A, Baldarelli RM, Baya M, Beal JS, Bello SM, et al: The Mouse Genome Database (MGD): From genes to mice-a community resource for mouse biology. Nucleic Acids Res 2005, 33(Database issue):D4741-D475.
    • (2005) Nucleic Acids Res , vol.33
    • Eppig, J.T.1    Bult, C.J.2    Kadin, J.A.3    Richardson, J.E.4    Blake, J.A.5
  • 51
    • 0035694237 scopus 로고    scopus 로고
    • Identification of essential genes in cultured mammalian cells using small interfering RNAs
    • Harborth J, Elbashir SM, Bechert K, Tuschl T, Weber K: Identification of essential genes in cultured mammalian cells using small interfering RNAs.J Cell Sci 2001, 114:4557-4565.
    • (2001) J Cell Sci , vol.114 , pp. 4557-4565
    • Harborth, J.1    Elbashir, S.M.2    Bechert, K.3    Tuschl, T.4    Weber, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.